CmoCh16G000200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G000200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal family protein
LocationCmo_Chr16 : 109316 .. 114736 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTAACCTACAAAATTGAAGTTTAAATTACATTTATTTAAGAAGATTGATGCTGCTGCAGTGGCACGGGATTCGTCCTGCGTCCACAAAAAGGCCTCGCTTTCTTTATCCATCTGTTTCCCTTCTCTCCTTGTTTCTTCAGTTTTCAAATTCCTGTTCCCATTCCCATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGGTATTTTAGCTTCATCTTCGCTGTTGTTTCTCAGGCAATGCAAGCTTCTGTTCCAATTCTTGTTTTCAGTTTTTTTTCACGTGTTTCCTACTGCGCTGAATTGTTGGAGTCTTAGGTCTGTCCAGGACTTCTTTACTAGTGAGTGTCTCGACTAGTCGTTCTCTAATGATTTGGTTCCTTAATCGGATCGTGCTCCTTATTGGGAGTAAGATCTAGAGAGAAATCTCGTGCTCCTTATTCGTCTTCCTTAATCGACCTGCTAACTCACTACCCTTAATAATTGAAGCGTGCTTCCAAAACTATCCACTAGTTACAAACCCAATAATTTCTCCCCCCGAACTGAACATTTCAAACACTAATTAGAAACCTATTCCACTGAGTTTCTCCCTTTACTCAAAGCCTTCTCCATTACTTTTATTTGCTCCAGCTAAAACTGCTAATTTCTATGCGTCATTTCTCATGCGTTTTCCATATCAAAACTCATGTCCCTTCTCCATTTTTTACTCTACACAGCCTCTCTGAAATGATCAGTATCAACAATAGTAAGCATGGCATCAGGAATCCACTACAATTTTTTTTTTTTCTCTAAAAAGGGTCCTCACCCTATTTCCTAACCTTCATCCAAATTGCTAGTCTTTTATATCTTCGTTTATTGCCGCTAGGGGATGGTTTTTAGGTGCATTCATTTTCTTCTATATCAGCATCTAAACCAAATTTTCTTCTCATCAAACACAACCATTTCCCTTCCATGATTATTTCATTTGGGGTAACACGCAATGGCAACTTCGTATTTCCCAATTTCAATTGTTTTCTTCTTCAGATACAACATATCTGCTTGAGGGATTCCTTTGTAAAATTGGATCACGAAATCTATAGGCCCTTGGCTTTTCACTAAACCAAGCCGCACAACTCGAGCTTTATCATCCTGCTTAGTTCTTCAGCATGATTCACACATCCAAAATTAGTTAAGTACTCAACAGGCCAACTCCACTCCCATTTGGAGTTCTTATTTTAGTGGGTCCTATCTGGAGACATACTGAAAACTTCTTCCAAATCAAAAGAAACAAAAGAAAAAATGGGTTCATTTGGAAGAAAGATGGAGTCCGACCTGTAGAGCACATGTAAGGCACAGTCGGTTGATCGGATCTCTATCTCTCTCTAGATATCTAGAGATGGAGAGAGATGTGAAAGTAATAGGCTTATAAAAGGTTTGGAACTCGAATTCCACTTGACGAGGGTATGGGATTGCTTGACTACATGCAAAAACTTTTCCTTCGACTGGATTGAATAATGATCTTTATTTCCAAGCTTAAGCTTAATGCTTGCGAGGCCAAGGTGGAACTGATTAAGCTTAAGCTTGGTTGATTTTGTCAAGGTGAAGAACTGGTTAAGCTTAAGCTTGGTTGATTTTGTCAAGGTGAAAGAACTGATTAAGCTTAGTTGATTTTGTCAGAAGAAAGTAGGTTACGCTGGTTCATTGATTAGTAAACCTCCCATGCTGGTAAAGCTTAGCTAAAGCCATACCCGCGAGATCCCATAGTGACTTGGCTTTGGGGTGGTTCTCCGTGGACAATGCCACCTCAAATCATTTTTCTTTTTCTCTTGCATCAAGTTGACCCACTCCCCACTATGTAGTGATTATAATCGATCATGTACGTGTCATCCCCTCCATTCCGATTGGTATATCATGAAAAAATCAAGCCCTTTGCACTACTGCTTTCTCTTGCCCAATGTTAGCCTTGTCAAAAGGTAGGTTTCCGCTCGTTGGTTAATTCATCCTGCAAGTCTATTTCTTTGAATTAGTACTGGTTTCTAGGAAAGTTGTTAATGATATTTTTAGTCAGTTAGCTTAAGTTTCTATACTTGGAGATACCGGCTAGAGTTGGGTAAGTGTAGTTTGTTGCTGATTTTATGGAGTTAACTAGGCTATTTTTAGCATTTGGAATTTGTATTTATAGTGACAAGTGATTGAATAAAACTGTTCACTTCCCAATTCTTCTCTATCTATTAAGAACAGCACCACTGTGAACAGCCTAATTTGCTGGTTCTGGCCAGAAGAAATTTGGGCGTTCTTTAAGCATAGTAATAGTCATTAAGATTATGTTTTTTAAAGCATGCGAATCTCCAAATTGGTGGTCATATCATTCTTTTATACAACTACATTTAGTTATCGTGTTTATGCAACCGTCAGTTGTTGAATGCTATTTGAACTCAAAAATTGGTGAACGCATGTGAAACTCTTTTCAATCAGTACATAGGGGCATATGGCCTTTCCTACTGATCAAAACAAGTTTGACAAGTCCACACTTTAGAGTGTACTCTTTGAAGCATATGTGAAACTCTCTAGATCCTTTCACGCCATTGATTTCCTTTGTCCATTACGAAGTAAACATTGCATAAATTTGGAAGAGACTTAAGCTAAGCTCTAGCTATGTTGAAGTTTCATTAAGCCCTTCAACTCAGCTATCCATGTCTTCAATGCTAAAGCTGCACAATATCTTCACCCGTAGATACTATAGGTTAAGGTATAACTTTGAGCATGAACTTATTCACCGCCATTATTAGACTCTTCCAAGATGGAAATAATTTGCACTTTCTTTCCTAAAATAGGAGACAGAGAATTTAAAATTTGCATTCAAAATCTATATGAAAGTAGTTTAAAGATAATATCTGTAGAGTCAAATCAAAAGGGCTAGCTTCAAATTCATTGAAGAGAAGGTTTAGAAACTAACCATTGACTGTAGGTCATCTTCTCCAACTTGCGTTCGTGCCATTCTGCTTCTTTTTTTATTTGTTTTCTTAAAATTCCCGGTGTTACAATAGCACTACTCTGATCGGCAAATTATTATTCAGCCCTTTACAGCACTACTAACACGTGTAAAAAAATTACCTTGTTGGTAGAAACTCCAATGAGAATGACAAGACCACCAACTAGCTATCGGAATTTCAATTACCCAATTTATCATATCTCAATGTTTCAAATGTCGGACCTTGAGTGGAGTTATTTTTTTTACTGTGCAAAATACTAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTATTGTATTGTTCCTTTATTTTAAATTTATCCATATGAATTGATTCTTTTTCTTTTCTAAAAACATGTGTGTTTGTGTAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGGCACATGAAAGGATTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAAGAGGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGGTTATTCCTTCAACCTTTGGTTTTTTTTTTTTTACCTTGAGTTCATTTTGCTGCATATATTAATCATCTAAGGTGATATTAGCTTGTACAAACTCATGGGTTCCATATTTACTATTTTCCACATGTTGAAGCTAATATGAGTGCTAGAGTTACTAAACCACAACTGTTATTGCTTAGTTAGAAATTGTTGTTTTCTCTAGTTTCTTATAAGGAAAAACAATCATCGATTTCGTAGTTGATTTTCTTTTTCCTATCTAGTGGTTGGTCTGAGGAAATGCTAGATGCAGAACTCAGCATCAGTTGAACCAGGTGCAATAAGTTACTCCTTGTGTAGGGGGGAAGAATGGAAAGCAGTGCATTCTCAATCTTGATTTCCCCTTCTGCTGTGCTTTTTTCAACTAAATTCTGCCCAACTCATCGTAGTTATATTTACTGTGAGATCTCACATCAATTGGGAAGGAAACGAAGCATTCTTTATAAGATTGTGGAAACCTTTCCCTAGCAAACATGTTTTAATAACCTCGAGGGGAAACCCAAAAGAAAAAGTTCAAAAAGAACAATATCTGCTAGCGGTATAAGGTTAATCAGTCAGGTCTTTTCTTTCACAACATGCTATTTTTGGTGAACATGAAAGCATCGGAAATTGGATCTTGTAGATGTAAGATAGAGGGCCTCCATAGTTGTAGAAGCCTAATATTTGTTATTTCTTGCGGAGCCAGCGTTGTGCTCAACTGTTATTGATTAGCTTCTAACTGTCGGACAGTACTTCATTGTCTACAAGGGACTGTTACATTAGAATTTCCTTTCAACTTTATCCCTTTAACCTGCTTAGAGTTACCAAGTTGGTTCATCACAGCAATTGAGACATCCTTCAAAGCTTGCATAGACCCTTTGCTCTTAACGAGTGTTTTATGGCCCCTTCCAACGTACTTGATCGTTATAGCTTTTGATTCATTTGCCTATTTTGTTGACATTCACCCCTAACCTGGGTATCATTTTTAGATGACTAAATCATGCATCATATATTGGAAGCTTGTGAATAATATATCGAAATGGTTAAAATGTTGTTTTTCCTTTTTCATGTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCGCCGTTGACAGTTGAAGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTAAAAAAAAAAAACTTGCTTTGTTGGGATTCTGTGCTGTTTATATCGTGGCTTGTTTCATCTTTGGCTCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

mRNA sequence

TCCTCTAACCTACAAAATTGAAGTTTAAATTACATTTATTTAAGAAGATTGATGCTGCTGCAGTGGCACGGGATTCGTCCTGCGTCCACAAAAAGGCCTCGCTTTCTTTATCCATCTGTTTCCCTTCTCTCCTTGTTTCTTCAGTTTTCAAATTCCTGTTCCCATTCCCATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGGCACATGAAAGGATTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAAGAGGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCGTTGACAGTTGAAGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGGCACATGAAAGGATTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAAGAGGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCGTTGACAGTTGAAGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA
Homology
[Close]
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match: PRSP1_SPIOL (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-89
Identity = 184/322 (57.14%), Postives = 240/322 (74.53%), Query Frame = 1 

Query: 8   MQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSC--- 67
           M T   SA ++ P+ ++S S++++   T    PT+          LSS  S F NSC   
Sbjct: 1   MATLCTSAINMNPNLTNSLSNSINLSST----PTN----------LSSLRSTFTNSCSLG 60

Query: 68  -NHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKA 127
            N   +++ ++  K +      + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+
Sbjct: 61  LNVAVKSVQISRNKPNV-----VCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKS 120

Query: 128 VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVS 187
           V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVS
Sbjct: 121 VAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVS 180

Query: 188 SIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEE--EEVSQE------DGGEA 247
           SI+QRKLRKIK+K SDHGRHMKGF+RSK+R+P P+ +  EE  EEV         +  + 
Sbjct: 181 SIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDF 240

Query: 248 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 307
           I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK 
Sbjct: 241 IEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK- 300

Query: 308 DGNAEKIETVTVEVAREASLAE 318
           DG  EK+E++ V+  ++ S AE
Sbjct: 301 DGKTEKLESLPVQTDKQPSFAE 302

[Close]
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match: HPF_SYNY3 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hpf PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 88/204 (43.14%), Postives = 129/204 (63.24%), Query Frame = 1 

Query: 97  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 156
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 157 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK--DSDHGRHMKGFDRSK 216
            EVT++     V+RA+E +E +YASIDLV+  + R+LRK KE+  D  HG        S+
Sbjct: 61  AEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG----NVKTSE 120

Query: 217 IREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 276
           I E  P+     EE +  +   E   E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 277 EETGEINILYKRKDGGYGLIIPKE 296
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match: HPF_SYNP2 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hpf PE=2 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-30
Identity = 78/199 (39.20%), Postives = 122/199 (61.31%), Query Frame = 1 

Query: 97  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 156
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 157 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPA 216
           T++     V+RA+E +E +YASIDLVS  + R+LRK KEK+     H++        + +
Sbjct: 61  TVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQ-------EKTS 120

Query: 217 PIVVEDE-EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 276
            ++ ED   + +  +   E   E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 EVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 277 EINILYKRKDGGYGLIIPK 295
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

[Close]
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match: HPF_DEIRA (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hpf PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 69/198 (34.85%), Postives = 117/198 (59.09%), Query Frame = 1 

Query: 101 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 160
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 161 KKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV 220
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK     +  EP P   
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGR-PEPLP--- 125

Query: 221 EDEEEEVSQEDGGEAID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 280
              E EV+ +  G A+D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ +
Sbjct: 126 GPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ 185

Query: 281 TGEINILYKRKDGGYGLI 292
            G+  ++Y+R+DG YGLI
Sbjct: 186 -GQTGVVYRRRDGHYGLI 188

[Close]
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match: HPF_STAHJ (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hpf PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-20
Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 1 

Query: 97  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 156
           ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQNST----TKIEV 61

Query: 157 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK-DSDHGRHMKGFDRSKIREP 216
           T+   K+  +RAEE  + +YA IDLV+S ++R++RK K + +  H  H          EP
Sbjct: 62  TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTH---------GEP 121

Query: 217 APIVVEDEE------EEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF 276
              V E +E      ++V+ E   ++  EI+R+K F + P+  EEA+ Q++ + HDFY F
Sbjct: 122 EAFVAEVQEAPPENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYIF 181

Query: 277 RNEETGEINILYKRKDGGYGLI 292
            + ET   +I+YKRKDG YGLI
Sbjct: 182 TDRETDGTSIVYKRKDGKYGLI 188

[Close]
BLAST of CmoCh16G000200 vs. TrEMBL
Match: A0A061G1K9_THECC (Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.1e-105
Identity = 224/325 (68.92%), Postives = 253/325 (77.85%), Query Frame = 1 

Query: 3   ALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFN 62
           AL +S QT+     S++ SSSS  SS+ S    S SL T T   +    +L S+ S+F N
Sbjct: 4   ALLASSQTSFHHPISVSVSSSSCHSSSAS----SVSLFTPTKPRI---PSLPSYKSSFLN 63

Query: 63  SCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK 122
              + F+ I   PRK     S ++RMSWDGPLSSVKLI+QGKNLELT+ VK+HVEEKVGK
Sbjct: 64  PIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHVEEKVGK 123

Query: 123 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 182
           AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDLV
Sbjct: 124 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDLV 183

Query: 183 SSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEV-SQEDGGEA------ 242
           SSI+QRKLRKIKEK+SDHGRHMKGF+R K+REP  ++VEDE E V  QED  EA      
Sbjct: 184 SSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEAVPEQED 243

Query: 243 ---IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLII 302
              IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK GGYGLII
Sbjct: 244 DGLIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKAGGYGLII 303

Query: 303 PKEDGNAEKIETVTVEVAREASLAE 318
           PK +G AEK+E V V+ A++ S  E
Sbjct: 304 PKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]
BLAST of CmoCh16G000200 vs. TrEMBL
Match: A0A067LAT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 7.0e-105
Identity = 215/317 (67.82%), Postives = 250/317 (78.86%), Query Frame = 1 

Query: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60
           MA L  S+QT   S H   PS S SS +  +T  +S  + +S N   L+  + SSH ++F
Sbjct: 1   MATLLGSLQT---SFHH--PSVSLSSKAAATTSSSSIYVLSSKN---LRFPSFSSHKTSF 60

Query: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120
            N  +      V     R   RS ++RMSWDGPLSSVKLI+QGKNLELT+ VK HVE+KV
Sbjct: 61  LNPLSD-----VKCIEVRRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDKV 120

Query: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASID 180

Query: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240
           L SSI+QRKLRKIKEK+SDHGRHMKGF+R K+REP  +VV+D+ +EV Q +  E IDE+V
Sbjct: 181 LASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEVV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300
           RTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK +G AE
Sbjct: 241 RTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGAE 300

Query: 301 KIETVTVEVAREASLAE 318
           K+ET+ VE ARE SL E
Sbjct: 301 KMETLVVEPAREPSLTE 304

[Close]
BLAST of CmoCh16G000200 vs. TrEMBL
Match: A0A0B0MSM5_GOSAR (30S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.9e-103
Identity = 209/323 (64.71%), Postives = 250/323 (77.40%), Query Frame = 1 

Query: 15  AHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVL-------KTHALSSHASAFFNSCNHC 74
           A +L  SS +S    +S   +SFS P+S++S++        +  +L S+ S+FFN   + 
Sbjct: 2   ATTLLASSQTSFHHPLSVSDSSFSSPSSSSSSISMFTLTKPRIPSLPSYKSSFFNPIGNY 61

Query: 75  FRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 134
           F+ + + PRK   + S ++RMSWDGPL+SVKLI+QGKNLELT+ VK+HVEEKVGKAVQKH
Sbjct: 62  FKCVEMEPRKIRNS-SLTVRMSWDGPLASVKLIIQGKNLELTDTVKQHVEEKVGKAVQKH 121

Query: 135 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQ 194
           SHLVREVDVRLSVRGGE GKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDLVSSI+Q
Sbjct: 122 SHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDLVSSILQ 181

Query: 195 RKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEE-------------EVSQEDGGE 254
           RKLRKIKEK+SD GRHMKGF RSK+REP  +VV+D+ E              V +++   
Sbjct: 182 RKLRKIKEKESDRGRHMKGFSRSKVREPVAVVVDDDAEAVPEQVVADDDVAAVPEQEDDS 241

Query: 255 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 314
            IDEIVRTKYF+MPPLTV EA+EQL+N+DHDFYGFRNEETGEINILYKRK GGYGLIIPK
Sbjct: 242 FIDEIVRTKYFEMPPLTVSEAVEQLENVDHDFYGFRNEETGEINILYKRKAGGYGLIIPK 301

Query: 315 EDGNAEKIETVTVEVAREASLAE 318
            +G AEK+E + VE A+E S  E
Sbjct: 302 GNGKAEKLEPLVVESAKEHSYVE 323

[Close]
BLAST of CmoCh16G000200 vs. TrEMBL
Match: M5X1N6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009612mg PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.3e-102
Identity = 211/298 (70.81%), Postives = 238/298 (79.87%), Query Frame = 1 

Query: 24  SSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFR-TIVVAPRKRHATR 83
           S+ SST+ T P  F+L              SS +S FFN   H    +I + P  +    
Sbjct: 2   STLSSTLLTKPQIFTL--------------SSTSSTFFNPAKHLKPISIAIRPTNKCHGN 61

Query: 84  SFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRG 143
           S S+RMSWDGPLSSVKLIVQG+NLEL+EAVKKHVE+KVGKAVQKHSHL RE DVRLSVRG
Sbjct: 62  SLSVRMSWDGPLSSVKLIVQGRNLELSEAVKKHVEDKVGKAVQKHSHLAREADVRLSVRG 121

Query: 144 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGR 203
           GEFGKGPRIRRCEVTLFTKKHGV RAEE+AET+YASIDL SSI+QRKLRKIKEKDSDHGR
Sbjct: 122 GEFGKGPRIRRCEVTLFTKKHGVFRAEEEAETLYASIDLASSIIQRKLRKIKEKDSDHGR 181

Query: 204 HMKGFDRSKIREPA-PIVVEDEEEE-VSQEDGGEAI-DEIVRTKYFDMPPLTVEEAIEQL 263
           HMKGF+R K+REPA  IVVE+EEEE V QE+ G+ I DEIVR KYFDMPPLTV EA++QL
Sbjct: 182 HMKGFNRLKVREPATQIVVEEEEEETVPQEEEGDFINDEIVRMKYFDMPPLTVAEAVDQL 241

Query: 264 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 318
           +N+DHDFY FRNEETGEINI+YKRK+GGYGLIIPK +G AEK   V +E ARE SLAE
Sbjct: 242 ENVDHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGNGKAEKSGHVVIERAREHSLAE 285

[Close]
BLAST of CmoCh16G000200 vs. TrEMBL
Match: V4TRV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021260mg PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 210/303 (69.31%), Postives = 243/303 (80.20%), Query Frame = 1 

Query: 13  LSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTI- 72
           LS+ S + SSSSSSSS+VS F T         S + KT    S+ S+FF      F+ I 
Sbjct: 22  LSSSSSSSSSSSSSSSSVSPFVTP------RKSQLAKT---LSYNSSFFGP----FKQIT 81

Query: 73  VVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLV 132
           V+ P K H T+   +RMSWDGPLSSVKLI+QGKNLELT+ VK HVEEKVGKAV KHSHLV
Sbjct: 82  VMRPTKVH-TKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV 141

Query: 133 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLR 192
           REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLR
Sbjct: 142 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 201

Query: 193 KIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLT 252
           KIKEK+SDHGRHMKGF+R K+REP   VVE++ +  S+E+    +DEIVR K+F+MPPLT
Sbjct: 202 KIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLT 261

Query: 253 VEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAR 312
           V EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYG+IIPK +G A+K+E + VE A 
Sbjct: 262 VSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETAS 310

Query: 313 EAS 315
            +S
Sbjct: 322 SSS 310

[Close]
BLAST of CmoCh16G000200 vs. TAIR10
Match: AT5G24490.1 (AT5G24490.1 30S ribosomal protein, putative)

HSP 1 Score: 355.9 bits (912), Expect = 2.6e-98
Identity = 181/248 (72.98%), Postives = 209/248 (84.27%), Query Frame = 1 

Query: 76  RKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 135
           R  +   S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 136 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKE 195
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+I+QRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 196 KDSDHGRHMKGFDRSKIREPA-PIVVEDEEEEV-----SQEDGGEAIDEIVRTKYFDMPP 255
           KDSDHGRHMKGF+R K+REP    VVED E+        +E+  + I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 256 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEV 315
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK+DG AEK+E +  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 316 AREASLAE 318
             E S AE
Sbjct: 301 LNEHSFAE 308

[Close]
BLAST of CmoCh16G000200 vs. NCBI nr
Match: gi|449459188|ref|XP_004147328.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 497.3 bits (1279), Expect = 2.0e-137
Identity = 270/317 (85.17%), Postives = 284/317 (89.59%), Query Frame = 1 

Query: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60
           MA LTSSMQ NLLS HSL+P     SSSTVS FP SFSL    + + LK HALSS+ASAF
Sbjct: 1   MATLTSSMQANLLSDHSLSP--PFHSSSTVSYFPASFSL----HFSALKVHALSSNASAF 60

Query: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120
           FNSC + F TI  A R RHA+ SFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCKN-FGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASID 180

Query: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240
           LVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIV
Sbjct: 181 LVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300
           RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G AE
Sbjct: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAE 300

Query: 301 KIETVTVEVAREASLAE 318
           K+E VT+E  RE SLAE
Sbjct: 301 KLEPVTIEATREPSLAE 310

[Close]
BLAST of CmoCh16G000200 vs. NCBI nr
Match: gi|659121787|ref|XP_008460813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 490.3 bits (1261), Expect = 2.5e-135
Identity = 269/317 (84.86%), Postives = 281/317 (88.64%), Query Frame = 1 

Query: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60
           MA LTSSMQ NLLS HSL P     SSSTVS FP  FSL    + + LK HALSS+ASAF
Sbjct: 1   MATLTSSMQANLLSDHSLPP--PHPSSSTVSYFPAPFSL----HFSALKVHALSSNASAF 60

Query: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120
           FNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLIVQGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCKN-FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASID 180

Query: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240
           LVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIV
Sbjct: 181 LVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300
           RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G AE
Sbjct: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAE 300

Query: 301 KIETVTVEVAREASLAE 318
           K+E VTVE ARE SLAE
Sbjct: 301 KLEPVTVEAAREPSLAE 310

[Close]
BLAST of CmoCh16G000200 vs. NCBI nr
Match: gi|590674564|ref|XP_007039204.1| (Plastid-specific 30S ribosomal protein 1 [Theobroma cacao])

HSP 1 Score: 391.3 bits (1004), Expect = 1.6e-105
Identity = 224/325 (68.92%), Postives = 253/325 (77.85%), Query Frame = 1 

Query: 3   ALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFN 62
           AL +S QT+     S++ SSSS  SS+ S    S SL T T   +    +L S+ S+F N
Sbjct: 4   ALLASSQTSFHHPISVSVSSSSCHSSSAS----SVSLFTPTKPRI---PSLPSYKSSFLN 63

Query: 63  SCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK 122
              + F+ I   PRK     S ++RMSWDGPLSSVKLI+QGKNLELT+ VK+HVEEKVGK
Sbjct: 64  PIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHVEEKVGK 123

Query: 123 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 182
           AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDLV
Sbjct: 124 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDLV 183

Query: 183 SSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEV-SQEDGGEA------ 242
           SSI+QRKLRKIKEK+SDHGRHMKGF+R K+REP  ++VEDE E V  QED  EA      
Sbjct: 184 SSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEAVPEQED 243

Query: 243 ---IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLII 302
              IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK GGYGLII
Sbjct: 244 DGLIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKAGGYGLII 303

Query: 303 PKEDGNAEKIETVTVEVAREASLAE 318
           PK +G AEK+E V V+ A++ S  E
Sbjct: 304 PKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]
BLAST of CmoCh16G000200 vs. NCBI nr
Match: gi|802542005|ref|XP_012080892.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas])

HSP 1 Score: 388.7 bits (997), Expect = 1.0e-104
Identity = 215/317 (67.82%), Postives = 250/317 (78.86%), Query Frame = 1 

Query: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60
           MA L  S+QT   S H   PS S SS +  +T  +S  + +S N   L+  + SSH ++F
Sbjct: 1   MATLLGSLQT---SFHH--PSVSLSSKAAATTSSSSIYVLSSKN---LRFPSFSSHKTSF 60

Query: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120
            N  +      V     R   RS ++RMSWDGPLSSVKLI+QGKNLELT+ VK HVE+KV
Sbjct: 61  LNPLSD-----VKCIEVRRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDKV 120

Query: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASID 180

Query: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240
           L SSI+QRKLRKIKEK+SDHGRHMKGF+R K+REP  +VV+D+ +EV Q +  E IDE+V
Sbjct: 181 LASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEVV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300
           RTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK +G AE
Sbjct: 241 RTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGAE 300

Query: 301 KIETVTVEVAREASLAE 318
           K+ET+ VE ARE SL E
Sbjct: 301 KMETLVVEPAREPSLTE 304

[Close]
BLAST of CmoCh16G000200 vs. NCBI nr
Match: gi|645257935|ref|XP_008234645.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic isoform X2 [Prunus mume])

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-104
Identity = 217/321 (67.60%), Postives = 253/321 (78.82%), Query Frame = 1 

Query: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60
           MA+L +S+Q      + L PSSSS+SS +++T        +ST     +   LSS +S F
Sbjct: 1   MASLFTSLQMQTTFLYPLHPSSSSASSQSMATL-------SSTLLTKPQVFPLSSTSSTF 60

Query: 61  FNSCNHCFR-TIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120
           FN   H    +IV+ P  +    S S+RMSWDGPLSSVKLI+QG+NLEL+EAVKKHVE+K
Sbjct: 61  FNPSKHLKPISIVIRPTNKCHGNSLSVRMSWDGPLSSVKLIIQGRNLELSEAVKKHVEDK 120

Query: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 180
           VGKAVQKHSHL RE DVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV RAEE+AET+YASI
Sbjct: 121 VGKAVQKHSHLAREADVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVFRAEEEAETLYASI 180

Query: 181 DLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAP--IVVEDEEEEVSQEDGGEAI- 240
           DL SSI+QRKLRKIKEKDSDHGRHMKGF+R K+REPA   +V E+EEE V QE+ G+ I 
Sbjct: 181 DLASSIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPATQMVVEEEEEETVPQEEEGDFIN 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVR KYFDMPPLTV EA++QL+N+DHDFY FRNEETGEINI+YKRK+GGYGLIIPK +
Sbjct: 241 DEIVRMKYFDMPPLTVAEAVDQLENVDHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGN 300

Query: 301 GNAEKIETVTVEVAREASLAE 318
           G AEK   V +E ARE SLAE
Sbjct: 301 GKAEKSGHVVIERAREHSLAE 314

The following BLAST results are available for this feature:
BLAST of CmoCh16G000200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRSP1_SPIOL1.6e-8957.14Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 ... [more]
HPF_SYNY31.4e-3443.14Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka... [more]
HPF_SYNP22.1e-3039.20Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ... [more]
HPF_DEIRA2.6e-2034.85Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13... [more]
HPF_STAHJ4.5e-2033.17Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS... [more]
BLAST of CmoCh16G000200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061G1K9_THECC1.1e-10568.92Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 S... [more]
A0A067LAT5_JATCU7.0e-10567.82Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1[more]
A0A0B0MSM5_GOSAR3.9e-10364.7130S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1[more]
M5X1N6_PRUPE3.3e-10270.81Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009612mg PE=4 SV=1[more]
V4TRV5_9ROSI1.0e-10069.31Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021260mg PE=4 SV=1[more]
BLAST of CmoCh16G000200 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24490.12.6e-9872.98 30S ribosomal protein, putative[more]
BLAST of CmoCh16G000200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459188|ref|XP_004147328.1|2.0e-13785.17PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus][more]
gi|659121787|ref|XP_008460813.1|2.5e-13584.86PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo][more]
gi|590674564|ref|XP_007039204.1|1.6e-10568.92Plastid-specific 30S ribosomal protein 1 [Theobroma cacao][more]
gi|802542005|ref|XP_012080892.1|1.0e-10467.82PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas][more]
gi|645257935|ref|XP_008234645.1|2.2e-10467.60PREDICTED: ribosome-binding factor PSRP1, chloroplastic isoform X2 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003489RHF/RaiA
Vocabulary: Biological Process
TermDefinition
GO:0044238primary metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044238 primary metabolic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000200.1CmoCh16G000200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinGENE3DG3DSA:3.30.160.100coord: 98..196
score: 6.9
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinPFAMPF02482Ribosomal_S30AEcoord: 100..196
score: 2.8
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinTIGRFAMsTIGR00741TIGR00741coord: 98..201
score: 7.4
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinunknownSSF69754Ribosome binding protein Y (YfiA homologue)coord: 98..203
score: 8.5
NoneNo IPR availablePANTHERPTHR33231FAMILY NOT NAMEDcoord: 81..309
score: 1.5E
NoneNo IPR availablePANTHERPTHR33231:SF130S RIBOSOMAL PROTEIN-RELATEDcoord: 81..309
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G000200Cp4.1LG14g07130Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G000200Carg15036Silver-seed gourdcarcmoB1326
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G000200Silver-seed gourdcarcmoB0730
CmoCh16G000200Cucumber (Chinese Long) v3cmocucB0392
CmoCh16G000200Cucurbita moschata (Rifu)cmocmoB275
CmoCh16G000200Cucumber (Gy14) v1cgycmoB0751
CmoCh16G000200Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G000200Cucurbita maxima (Rimu)cmacmoB405
CmoCh16G000200Wild cucumber (PI 183967)cmocpiB335
CmoCh16G000200Cucurbita pepo (Zucchini)cmocpeB303
CmoCh16G000200Bottle gourd (USVL1VR-Ls)cmolsiB319