Carg15036 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15036
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosome hibernation promoting factor
Location	Cucurbita_argyrosperma_scaffold_078 : 232232 .. 237775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGGTATTTTAGCTTCATCTTCGCTGTTGTTTCTCAGGCAATGCAAGCTTCTGTTCCAATTCTTGTTTTCAGTTTTTTTTCATGTGTTTCCTACTGCGCTGAATTGTTGGAGTCTTAGGTCTGTCCAGGACTTCTTTACTAGTGAGTGTCTCGACTAGTCGTTTTCTAATGATTTGGTTCCTTAATCGGATCGTGCTCCTTATTGGGAGTAAGATCTAGAGAGAAATCTCGTGCTCCTTATTCGTGCTCCTTAATCGACCTGCTAACTCACTACCCTTAATAATTGAAGCGTGATGCCAAAACTATCCACTAGTTACAAACCCAATAATTTCTCCCCCCGAACTGAACATTTCAAACACTAATTAGAAACCTATTCCACTGAGTTTCTCCCTTTACTCAAAGCCTTTTCCATTACTTTTATTTGCTCCAGCTAAAACTGCTAATTTCTATGCGTCATTTCTCATGCGTTTTCCATATCAAAACTCATGTCCCTTCTCCATTTTTTACTCTACACAGCCTCTCTGAAATGATCAGTATCAACAATAGTAAGCATGGCATCAGGAATCCACTGCAATTTTTTTTTTTCTAAAAAGGGTCCTCACCCTATTTCCTAACCTTCATTTTATATCTTCGTTTATTGCCGCTTGGAGATGGTTTTTAGGGTGCATTCATTTTCTTCTATATCAGCATCTAAACCAAATTTTCTTCTCATCAAACACAACCATTTCCCTTCCATGATTATTTCATTTGGGGTAACACGCAATGGCAACTTCGTATTTCCCAATTTCAATTGTTTTCTTCTTCAGATACAACATATCTGCTTGAGGGATTCCTTTGTAAAATTGGATCACGAAATCTATAGGCCCTTGGCTTTTCACTAAACCAAGCCGCACAACTCGAGCTTTATCATCCTGCTTAGTTCTTCAGCATGATTCACACATCCAAAAGCAGTTAAGTACTCAACAGGCCAACTCCTGAGTTCTTATTTTAGTGGGTCCTATCTGGAGACATACTGAAAACTTCTTCCAAATCAAAAGAAACAAAAGAAAAAATGTTTTCATCCAAATCAAAAGAAACAAAAGAAAAAATGTGTTCATTGGTTGGGAAGAAAGATGGAGTCCGACCTGTAGAGCACATGTAAGGCACAGTCGGATTGATCGGATCTCTATCTCTCTCTAGATATCCAGAGATGGAGAGAGATGTGAAAGTAATAGGCTTATAAAAGGTTTGGAACTCGAATTCCACTCGACGAGGGTATGGGATTGCTTGACTACATGCAAAAGCTTTTCCTTCGACTGGATTGAATAATGATCTTTATTTCCAAGCTTTTTATTTCCAAGCTTTTTATTTCCAAGCTTAAACTTAATGCTTGCGAGGCCAAGGTGAAGAACTGATTAAGCTTAAGCTTGGTTGATTTTGTCAAGGTGAAGAACTGGTTAAGCTTAAGCTTGGTTGATTTTGTCAAGGTGAAAGAACTGATTAAGCTTAGTTGATTTTATCAGAAGAAAGTAGGTTACACTGGTTCATTCATTAGTAAACCTCTCATGCTGGTAAAGCTTAGCTAAAACCATACCCGCGAGATCCCATAGTGACTTGGCTTTGAGATCCCATAGTGACTTGGCTTTGAGATCCCATAGTGACTTCATCAAGTTGACCCACTCTCCACTATGTAGTGATTATATCAATCATGTACGTGTCATCCCCTCCATTCTGATTGGTATATCATGAAAAAATCAAGCCCTTTGCACTACTGCTTTCTCTTGCCCAATGTTAGCCTTGTCAAAAGGTAGGTTTCCGCTCGTTGGTTAATTCATCCTGCAAGTCTATTTCTTTGAATTAGTACTGGTTTCTTGGAAAGTTGTTAATGATATTTTTAGTCAGTTAGCTTAAGTTGCTATACTTGGAGATACCGGCTAGAGTTGGGTAAGTGTAGTTTGTTGCTGATTTTATGGAGTTAACTAGGCTATTTTCAGCATTTGGAATTTGTATTTATAGTGACAAGTGATTGAATAAAACTGTTCACTTCCCAATTCTTCTCTATCTATTAAGAACAGCACCACTGTGAACAGCCTAATTTGCTGGTTCTGGCCAGAAGAAATTTGGGTGTTCTTTAAGCATAGTAATAGTCATTAAGATTATGTTTTTAAAGCATGCGAATCTCCAAATTGGTGGTCATATCATTCTTTTATGCAACTACATTTAGTTATCGTGTTTATGCAACCGTCAGTTGTTGAATGCTATTTGAACTCAAAAATTGGTGAACGCATGTGAAACTCTTTTCAATCAGTACATAGGGGCATATGGCCTTTCCTACTGATCAAAACAAGTTTGACAAGTCCACACTCTAGCTCCTTTCACGCCATTGATTTCCTTTGTCCATTACGAAGTAAACATTGCATAAATTTGGAAGAGACTTAAGCTAAGCTCTAGCTATGTTGAAGTTTCATTAAGCCCTTCAACTCAGCTATCCATGTCTTCAATGCTAAAGCTGCACAATATCTTCACCCGTAGATACTATAGGTTAAGGTATAACTTTGAGCATGAACTTATTCACCGCCATTATTAGACTCTTCCAAAATGGAAATACCTTGCACTTTCTTTCCTAAAATAGGAGACAAAAAATTTAAAATTTGCATTCAAAATCGATATGAAAGTAGTTTAAAGATAATATCTGTAGAGTCAAATCAAAAGGGCTAGCTTCAAATTCATTGAAGAGAAGGTTTAGAAACTAACCATTGACTGTAAGTCATCTTCTCCAACTTGCGTTCGGGCCATTCTGCTTCTTTTTTTATTTGTTTTCTTAAAATTCCCGGTGTTACAATAGCATTACTCTGATCGGCAAATTATTATTCAGCTCTTTACAGCACTACTAACACGTGTAAAAAAAATTACCTTGTTGGTAGAAACTCCAATGAGAATGACCAGATCACCAACTGGCTATCGGAATTTCAATTACCCAATTTATCATATCTCAATGTTTCAAATGTCGGACCTTGAGTGGATTTATTTTTTTTACTGTGCAAAAATACTAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTATTGTATTGTTCCTTTATTTTAAATTTATCCATATGAATTGTTTCTTTTTCTTTTCTAAACACATGTGTGTTTGTGTAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGACCCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGGTTATTCCTTCAACCTTTGTTTTTTTTTTTTTTTTTTTTACCTCGAGTTCATTTTGCTGCATACCTTAATCATCTAAGGTGATATTAGCTTGTACAAACTCATGGGTTCCATATTTCCTATTTTCCACATGTTGAAGCTAATATGAGTGCTAGAGTTACTAAACCACAACTGTTATTGCTTAGTTAGAAATTGTTGTTTTCTCTAGTTTCTTATAAGGAAAAACAATCATCGATTTCGTAGTTGATTTTCTTTTTCCTATCTAGTGGTTGGTCTGAGGAAATGCTAGATGCAGAACTCAGCATCAGTTGAACCAGGTGCAATAAGTTACTCCTTGTGTAGGGGGGAAGAATGGAAAGCAGTGCATCTCAATCTTGATTTCCCCTTCTGCTGTGCTTTTTTCAACTAAATTCTGCCAGTGCATCTCAATCTTGATTTCCCCTTCTGCTGTGCTTTTTTCAACTAAATTCTGCCCAAACTCATCGTAGTTATATTTACCGTGAGATCTCACATCAATTGGGATGGAAATGAAGCATTCTTTATAAGATTGTGGAAACGTTTCCCTAGCAAACATGTCTAATAACCTTGAGGGGAAACCCAAAAGAAAAAGTCCAAAAAGAACAACTTGGGCTGTTACATTTACATTATAAGGTTAATCAGTCAGGTCTTTTCTTTCACAACATGCTATTTTTGGTGAACATGAAAGCATCGGAAATTGGATCTTGTAGATGTAAGATAGAGGGCCTCCATAGTTGTAGAAGCCTAATATTTGTTATTTCTTGCGGAGCCAGCATTGTGCTCAACTGTTATTGATTAGCTTCTAACTGTCGGACAGTCCTTCATTGTCTACAAGGGACTGTTACATTACAATTTCCTTTCAACTTTATCCTTTTAACCTGCTTAGAGTTACCAAGTTGGTTCATCACAGCAATTGAGACATCCTTCAAAGCTTGCATAGACCCTTTGCTCTTAACGAGTGTTTTATGGCCCCTTCCAACGTACTTGATCGTTATAGCTTTTGATTCATTTGCCTATTTTGTTGACATTCAAGTCTGGCTGGAAGAAGCAGTTGCTGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTCCTAACAGTTGCATGTATCATTTTTAGATGACTAAATCATGCATCATATATTGGAAGCTTGTGAATAATATATCGAAATGGTTAAAATGTTGTTTTTCCTTTTTCATGTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTAAAAAAAAAAAAAAAACTTGCTTTGTTGGGATTCTGTGCTGTTTATATCGTGGCTTGTTTCATCTTTGGCTCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

mRNA sequence

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGACCCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGACCCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

Protein sequence

MAALTSSMQTNLLSAHSLTPSSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE

Homology

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BLAST of Carg15036 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 574.3 bits (1479), Expect = 2.5e-160
Identity = 315/321 (98.13%), Postives = 316/321 (98.44%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSAHSLTPXXXXXXXXXXXXXXXXXXXSFSLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLSAHSLTP    XXXXXXXXXXXXXX SFSLPTSTNSAVLKTHALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTP----XXXXXXXXXXXXXXTSFSLPTSTNSAVLKTHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIR+PAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVEVAREASLAE 322
           GNAEKIETVTVEVAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 317

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BLAST of Carg15036 vs. NCBI nr
Match: XP_023551717.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.6 bits (1472), Expect = 1.7e-159
Identity = 299/321 (93.15%), Postives = 301/321 (93.77%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSAHSLTPXXXXXXXXXXXXXXXXXXXSFSLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLSAHSLTP                   SFSLPTSTNSAVLK HALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTP------SSSSSTTVSTFPTSFSLPTSTNSAVLKIHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIR+PAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVEVAREASLAE 322
           GNAEKIETVTVEVAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 315

[Close]

BLAST of Carg15036 vs. NCBI nr
Match: XP_022984371.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 546.2 bits (1406), Expect = 7.4e-152
Identity = 278/282 (98.58%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 40  SFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLS 99
           SFSLPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLS
Sbjct: 42  SFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLS 101

Query: 100 SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 159
           SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCE
Sbjct: 102 SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 161

Query: 160 VTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDP 219
           VTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIR+P
Sbjct: 162 VTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREP 221

Query: 220 APIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 279
           APIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG
Sbjct: 222 APIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 281

Query: 280 EINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           EINILYKRKDGGYGLIIPKE+GNAEKIETVTVEVAREASLAE
Sbjct: 282 EINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Carg15036 vs. NCBI nr
Match: XP_004147328.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 487.6 bits (1254), Expect = 3.1e-134
Identity = 259/321 (80.69%), Postives = 274/321 (85.36%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSAHSLTPXXXXXXXXXXXXXXXXXXXSFSLPTSTNSAVLKTHALSSH 60
           MA LTSSMQ NLLS HSL+P                    F    S + + LK HALSS+
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSSTVSY----------FPASFSLHFSALKVHALSSN 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSC + F TI  A R RHA+ SFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCKN-FGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVF 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+R+PAPIVVEDEEEEV QEDGGE I
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 300

Query: 301 GNAEKIETVTVEVAREASLAE 322
           G AEK+E VT+E  RE SLAE
Sbjct: 301 GTAEKLEPVTIEATREPSLAE 310

[Close]

BLAST of Carg15036 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 260/321 (81.00%), Postives = 273/321 (85.05%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSAHSLTPXXXXXXXXXXXXXXXXXXXSFSLPTSTNSAVLKTHALSSH 60
           MA LTSSMQ NLLS HSL P                    F  P S + + LK HALSS+
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSY----------FPAPFSLHFSALKVHALSSN 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCKN-FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVF 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+R+PAPIVVEDEEEEV QEDGGE I
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 300

Query: 301 GNAEKIETVTVEVAREASLAE 322
           G AEK+E VTVE ARE SLAE
Sbjct: 301 GTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Carg15036 vs. TAIR10
Match: AT5G24490.1 (30S ribosomal protein, putative)

HSP 1 Score: 340.9 bits (873), Expect = 8.6e-94
Identity = 174/248 (70.16%), Postives = 199/248 (80.24%), Query Frame = 0


Query: 80  RKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 139
           R  +   S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 140 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKE 199
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+I+QRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 200 KDSDHGRHMKGFDRSKIRDP------APIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPP 259
           KDSDHGRHMKGF+R K+R+P                          I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPXXXXXXXXXXXXXXXXXXXXXXXXXLIKEIVRTKTFEMPP 240

Query: 260 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEV 319
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK+DG AEK+E +  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 320 AREASLAE 322
             E S AE
Sbjct: 301 LNEHSFAE 308

[Close]

BLAST of Carg15036 vs. Swiss-Prot
Match: sp|P19954|PRSP1_SPIOL (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 334.3 bits (856), Expect = 1.5e-90
Identity = 165/238 (69.33%), Postives = 203/238 (85.29%), Query Frame = 0


Query: 92  MSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGK 151
           MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V KHSHLVREVDVRLS RGG+  K
Sbjct: 66  MSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSK 125

Query: 152 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGF 211
           GP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSI+QRKLRKIK+K SDHGRHMKGF
Sbjct: 126 GPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGF 185

Query: 212 DRSKIRDPAPIVVEDEE--EEVSQE------DGGEAIDEIVRTKYFDMPPLTVEEAIEQL 271
           +RSK+RDP P+ +  EE  EEV         +  + I+E+VRTKYFDMPPLT+ EA+EQL
Sbjct: 186 NRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTKYFDMPPLTITEAVEQL 245

Query: 272 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           +N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK DG  EK+E++ V+  ++ S AE
Sbjct: 246 ENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQTDKQPSFAE 302

[Close]

BLAST of Carg15036 vs. Swiss-Prot
Match: sp|P74518|HPF_SYNY3 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-34
Identity = 87/204 (42.65%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 160
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 161 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK--DSDHGRHMKGFDRSK 220
            EVT++     V+RA+E +E +YASIDLV+  + R+LRK KE+  D  HG        S+
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG----NVKTSE 120

Query: 221 IRDPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 280
           I +  P+     EE +  +   E   E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 281 EETGEINILYKRKDGGYGLIIPKE 300
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]

BLAST of Carg15036 vs. Swiss-Prot
Match: sp|P47908|HPF_SYNP2 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-31
Identity = 79/199 (39.70%), Postives = 120/199 (60.30%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 160
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 161 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKI-RDP 220
           T++     V+RA+E +E +YASIDLVS  + R+LRK KEK+     H++      +  DP
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDP 120

Query: 221 APIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 280
            P       + +  +   E   E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 VP-------DNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 281 EINILYKRKDGGYGLIIPK 299
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

[Close]

BLAST of Carg15036 vs. Swiss-Prot
Match: sp|Q4L4H7|HPF_STAHJ (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=hpf PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-19
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 160
           ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQ----NSTTKIEV 61

Query: 161 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK-DSDHGRHMKGFDRSKIRDP 220
           T+   K+  +RAEE  + +YA IDLV+S ++R++RK K + +  H  H          +P
Sbjct: 62  TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTH---------GEP 121

Query: 221 APIVVEDEE------EEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF 280
              V E +E      ++V+ E   ++  EI+R+K F + P+  EEA+ Q++ + HDFY F
Sbjct: 122 EAFVAEVQEAPPENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYIF 181

Query: 281 RNEETGEINILYKRKDGGYGLI 296
            + ET   +I+YKRKDG YGLI
Sbjct: 182 TDRETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Carg15036 vs. Swiss-Prot
Match: sp|Q49VV1|HPF_STAS1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) OX=342451 GN=hpf PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-19
Identity = 67/197 (34.01%), Postives = 115/197 (58.38%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 160
           ++  + G+NL +T+A++ ++EEK+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQ----NSATKIEV 61

Query: 161 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPA 220
           T+  KK   +RAEE  + +YA IDL+++ ++R++RK K + +   R     +R +    A
Sbjct: 62  TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNR-----NRGEQEAFA 121

Query: 221 PIVVEDEEEEVSQEDGGEAID--EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 280
            +  E E  E+ Q D  EA +  EI+R K F + P+  EEA+ Q+  + HDF+ F + ET
Sbjct: 122 SLPEEKEAVEI-QNDENEADNEIEIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRET 181

Query: 281 GEINILYKRKDGGYGLI 296
              +I+YKRKDG YGLI
Sbjct: 182 DGTSIVYKRKDGKYGLI 186

[Close]

BLAST of Carg15036 vs. TrEMBL
Match: tr|A0A1S3CCT7|A0A1S3CCT7_CUCME (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.0e-133
Identity = 260/321 (81.00%), Postives = 273/321 (85.05%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSAHSLTPXXXXXXXXXXXXXXXXXXXSFSLPTSTNSAVLKTHALSSH 60
           MA LTSSMQ NLLS HSL P                    F  P S + + LK HALSS+
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSY----------FPAPFSLHFSALKVHALSSN 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCKN-FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVF 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+R+PAPIVVEDEEEEV QEDGGE I
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 300

Query: 301 GNAEKIETVTVEVAREASLAE 322
           G AEK+E VTVE ARE SLAE
Sbjct: 301 GTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Carg15036 vs. TrEMBL
Match: tr|A0A067LAT5|A0A067LAT5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17075 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 5.9e-105
Identity = 198/274 (72.26%), Postives = 229/274 (83.58%), Query Frame = 0


Query: 48  NSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQG 107
           +S  L+  + SSH ++F N  +      V     R   RS ++RMSWDGPLSSVKLI+QG
Sbjct: 36  SSKNLRFPSFSSHKTSFLNPLSD-----VKCIEVRRGRRSPTVRMSWDGPLSSVKLIIQG 95

Query: 108 KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 167
           KNLELT+ VK HVE+KVGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKH
Sbjct: 96  KNLELTDTVKNHVEDKVGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKH 155

Query: 168 GVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDE 227
           GV+RAEEDAET+YASIDL SSI+QRKLRKIKEK+SDHGRHMKGF+R K+R+P  +VV+D+
Sbjct: 156 GVIRAEEDAETIYASIDLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDD 215

Query: 228 EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKR 287
            +EV Q +  E IDE+VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKR
Sbjct: 216 ADEVPQTEEVEYIDEVVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 275

Query: 288 KDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           K GGYGLIIPK +G AEK+ET+ VE ARE SL E
Sbjct: 276 KAGGYGLIIPKGEGGAEKMETLVVEPAREPSLTE 304

[Close]

BLAST of Carg15036 vs. TrEMBL
Match: tr|A0A061G1K9|A0A061G1K9_THECC (Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao OX=3641 GN=TCM_015512 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 6.5e-104
Identity = 200/276 (72.46%), Postives = 225/276 (81.52%), Query Frame = 0


Query: 56  ALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEA 115
           +L S+ S+F N   + F+ I   PRK     S ++RMSWDGPLSSVKLI+QGKNLELT+ 
Sbjct: 46  SLPSYKSSFLNPIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDT 105

Query: 116 VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 175
           VK+HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED
Sbjct: 106 VKQHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 165

Query: 176 AETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQED 235
           AETVY SIDLVSSI+QRKLRKIKEK+SDHGRHMKGF+R K+R+P  ++VEDE E V +  
Sbjct: 166 AETVYGSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEXX 225

Query: 236 GGE----------AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILY 295
                         IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILY
Sbjct: 226 XXXXXXXXXXXXGLIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILY 285

Query: 296 KRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           KRK GGYGLIIPK +G AEK+E V V+ A++ S  E
Sbjct: 286 KRKAGGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]

BLAST of Carg15036 vs. TrEMBL
Match: tr|A0A2C9VZB4|A0A2C9VZB4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G197600 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 6.1e-102
Identity = 198/274 (72.26%), Postives = 225/274 (82.12%), Query Frame = 0


Query: 48  NSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQG 107
           +S  L+  +L S  S+F N          V   +R   R  S+RMSWDGPLSSVKLI+QG
Sbjct: 34  SSKKLRFPSLLSQESSFLNPLALVSNVKYVKDSRR---RGSSVRMSWDGPLSSVKLIIQG 93

Query: 108 KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 167
           KNLELT+ VK HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH
Sbjct: 94  KNLELTDTVKNHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 153

Query: 168 GVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDE 227
           GV+RAEEDAET+YASIDLVSSI+QRKLRKIKEK SDHGRHMKGF+R K+R+P    V+D+
Sbjct: 154 GVIRAEEDAETIYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDD 213

Query: 228 EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKR 287
            + V Q++  + IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKR
Sbjct: 214 VDGVPQDEDEDYIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 273

Query: 288 KDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           K GGYG+IIPK  G AEK+E + VE A+E SLAE
Sbjct: 274 KAGGYGVIIPKGHGKAEKLEPLVVEPAKEPSLAE 304

[Close]

BLAST of Carg15036 vs. TrEMBL
Match: tr|A0A2I4ESI6|A0A2I4ESI6_9ROSI (ribosome-binding factor PSRP1, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108992293 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 201/286 (70.28%), Postives = 232/286 (81.12%), Query Frame = 0


Query: 42  SLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHAT-RSFSIRMSWDGPLSS 101
           +LPT   + +  T  LSS+ S+F  +     + + + PR  H    S SIRMSW GPLSS
Sbjct: 44  TLPTKLPNPLALT--LSSYKSSFLKN----LKPVSLTPRTNHGNGSSLSIRMSWGGPLSS 103

Query: 102 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 161
           VKLI+QGKNLELT+ VKKHVEEKVGKAV KHSHLVREVDVRLSVRGGEFGKGPRIRRCEV
Sbjct: 104 VKLIIQGKNLELTDTVKKHVEEKVGKAVAKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 163

Query: 162 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPA 221
           TL+ KKHGV+RAEEDAETVY SIDLVSSI+QRKLRKIKEK+SDHGRHMKGFDR K+R+P 
Sbjct: 164 TLYAKKHGVIRAEEDAETVYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFDRLKVREPM 223

Query: 222 PIVVED-----EEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 281
              VE+     EE+ + QE+  + I+EIVRTKYFDMPPLTV EAIEQL+NIDHDFYGFRN
Sbjct: 224 VQAVEEKAEENEEDALPQEEDEQIINEIVRTKYFDMPPLTVSEAIEQLENIDHDFYGFRN 283

Query: 282 EETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 322
           EETGEINI+YKRK GGYGLIIPKE+  AEK+E + V+  RE+SLA+
Sbjct: 284 EETGEINIIYKRKVGGYGLIIPKENFEAEKLEPMVVKPDRESSLAD 323

The following BLAST results are available for this feature:

BLAST of Carg15036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922607.1	2.5e-160	98.13	ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]	[more]
XP_023551717.1	1.7e-159	93.15	ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022984371.1	7.4e-152	98.58	ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima]	[more]
XP_004147328.1	3.1e-134	80.69	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]	[more]
XP_008460813.1	1.6e-133	81.00	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]	[more]

BLAST of Carg15036 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24490.1	8.6e-94	70.16	30S ribosomal protein, putative	[more]

BLAST of Carg15036 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P19954\|PRSP1_SPIOL	1.5e-90	69.33	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
sp\|P74518\|HPF_SYNY3	2.5e-34	42.65	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
sp\|P47908\|HPF_SYNP2	5.8e-31	39.70	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
sp\|Q4L4H7\|HPF_STAHJ	1.0e-19	32.67	Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS...	[more]
sp\|Q49VV1\|HPF_STAS1	2.3e-19	34.01	Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. sap...	[more]

BLAST of Carg15036 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCT7\|A0A1S3CCT7_CUCME	1.0e-133	81.00	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A067LAT5\|A0A067LAT5_JATCU	5.9e-105	72.26	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17075 PE=3 SV=1	[more]
tr\|A0A061G1K9\|A0A061G1K9_THECC	6.5e-104	72.46	Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao OX=3641 GN=TCM_01551...	[more]
tr\|A0A2C9VZB4\|A0A2C9VZB4_MANES	6.1e-102	72.26	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G197600 PE=3 SV=...	[more]
tr\|A0A2I4ESI6\|A0A2I4ESI6_9ROSI	1.4e-101	70.28	ribosome-binding factor PSRP1, chloroplastic isoform X1 OS=Juglans regia OX=5124...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0044238	primary metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR034694	HPF_long/plastid
IPR038416	Ribosom_S30AE_C_sf
IPR003489	RHF/RaiA
IPR036567	RHF-like
IPR032528	Ribosom_S30AE_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15036-RA	Carg15036-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 241..294 e-value: 2.8E-26 score: 90.8
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	G3DSA:3.30.160.100		coord: 102..208 e-value: 3.4E-22 score: 80.6
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	SSF69754	Ribosome binding protein Y (YfiA homologue)	coord: 102..207
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 102..205 e-value: 7.6E-19 score: 66.1
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 104..200 e-value: 2.8E-22 score: 79.2
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 102..200 e-value: 4.23871E-24 score: 93.3485
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	G3DSA:3.30.505.50		coord: 252..304 e-value: 6.7E-20 score: 72.4
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN-RELATED	coord: 101..301
None	No IPR available	PANTHER	PTHR33231	FAMILY NOT NAMED	coord: 101..301
IPR034694	Ribosome hibernation promoting factor, long/plastid	HAMAP	MF_00839	HPF	coord: 101..298 score: 20.395

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15036	CmoCh16G000200	Cucurbita moschata (Rifu)	carcmoB1326
Carg15036	Cp4.1LG14g07130	Cucurbita pepo (Zucchini)	carcpeB1376

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15036	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15036	Wild cucumber (PI 183967)	carcpiB1028
Carg15036	Cucumber (Chinese Long) v3	carcucB1034
Carg15036	Bottle gourd (USVL1VR-Ls)	carlsiB905
Carg15036	Silver-seed gourd	carcarB503
Carg15036	Cucumber (Gy14) v1	carcgyB1108
Carg15036	Cucurbita maxima (Rimu)	carcmaB1366
Carg15036	Cucurbita maxima (Rimu)	carcmaB1368
Carg15036	Cucurbita moschata (Rifu)	carcmoB1328