CmoCh15G014740 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G014740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Arginine-aspartate-rich RNA binding protein-like) (LUC7 N_terminus domain-containing protein)
Location	Cmo_Chr15 : 10014581 .. 10015900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTCTTGGTGTTGCCGTTGGAGCCCTAGTACTAGCCCACACAATCTCTCCAAAAACATTCCCAAGAATCTCAAAACCCCTTTTTAATCTCTTGAAACTGAATTTCAAGTTTCTGAATTTGGATCGTTCTTTCAAGTAATTGTTTCTTTGTTTTCTGTGATCCTCTGGAAAGCATTTGGTCAGCATGGACGCCCAGAGAGCTCTTCTGGATGAACTCATGGGTTCAGGTACTCTTCTGATTCGACTTGTAATTTTTCTTTGGAAATTTTCGTTTCAATTTGTGGAGCATCTAGTTGGAGGGGAATGGAAGTGTTTCTATTAGTTTAGAGGAATTTGGCAGGGAATGTGGGAGTATTATCCACCAGGCGTGCAATTTTTCACTTGATATTCCCCTTTTGTGATTTCCAACATGAGTTTTCTTATTTTTAATTTTCTTTTTTCACGATTTTTGTTGCCATTTGATCTTTGTTGGTGCTTGCTTGTATTTTCGTGTGGCTGATGTCTTCCTTCAAATTTCCACGGCGAAAGTTGTCTTTGCTTCAAACGAAGCGACTGATTTTGCATCTGTTTTGGTTTTTTTAGCGCGTAATTTGACGGAGGAAGAAAGAAGAGGATACAAGGAAGTTATGTGGGATGATAAAGAGGTCTGTGGGTTCTATATGGTCCGGTTCTGCCCGCATGATCTTTTCGTAAATACTCGGAGCGACCTTGGTGCGTTGTTTACTTTTTTATATTAACCGTAACTCTGGTCTCTGGTCTCTGTCAAATTTCTAAGTGGCAAAGTCCAATAAGGAGAAGTCAGTAGCAGTTGTTGAGAATAATGGTAAAATGCTAATTCTGTGTATGTTTTTAGCCTCAATGCTTATTCTTATTGGATAACGTTCTTATTTGTGTTTATAGGTCTACTTACAGTAAGTATATGCTCGTTTATCCTTTTTTTTGCGGACTATTGGTCTATAATGTATAGGAAGGGTAATTTGTTTCTAAGATTGGATTCTTGCTTCCTCTTTTGTATCAGGTCCTTGTCCTAGAATACATGACCAGAAATTGAAAGAAAGGTGAAACCCAAGTACCAAATTTGAGTACTTTTATCACCGCTTTTGGTCATGAATTTTATATTCTATATGCATTTCCCGCACATGGTTACAAAACAAAGCTTCTGTTTTCACTATTTATATTTAGACAACTCTCTTTAGAGGAGGTCTGGCAACTGCACTAGCTATGTTGTGGGAAATATAAGATATGGCATTTGACAGGATTTGTTTTCGTGAGCGTTGGTTGGCTATTGTTTTTATGCATCAAGTTTCCAGTTCATAA

mRNA sequence

TTTATTTCTTGGTGTTGCCGTTGGAGCCCTAGTACTAGCCCACACAATCTCTCCAAAAACATTCCCAAGAATCTCAAAACCCCTTTTTAATCTCTTGAAACTGAATTTCAAGTTTCTGAATTTGGATCGTTCTTTCAAGTAATTGTTTCTTTGTTTTCTGTGATCCTCTGGAAAGCATTTGGTCAGCATGGACGCCCAGAGAGCTCTTCTGGATGAACTCATGGGTTCAGCGCGTAATTTGACGGAGGAAGAAAGAAGAGGATACAAGGAAGTTATGTGGGATGATAAAGAGGTCTGTGGGTTCTATATGGTCCGGTTCTGCCCGCATGATCTTTTCGTAAATACTCGGAGCGACCTTGGTCTACTTACAGTAAGTATATGCTCGTTTATCCTTTTTTTTGCGGACTATTGGTCTATAATGTATAGGAAGGATATGGCATTTGACAGGATTTGTTTTCGTGAGCGTTGGTTGGCTATTGTTTTTATGCATCAAGTTTCCAGTTCATAA

Coding sequence (CDS)

ATGGACGCCCAGAGAGCTCTTCTGGATGAACTCATGGGTTCAGCGCGTAATTTGACGGAGGAAGAAAGAAGAGGATACAAGGAAGTTATGTGGGATGATAAAGAGGTCTGTGGGTTCTATATGGTCCGGTTCTGCCCGCATGATCTTTTCGTAAATACTCGGAGCGACCTTGGTCTACTTACAGTAAGTATATGCTCGTTTATCCTTTTTTTTGCGGACTATTGGTCTATAATGTATAGGAAGGATATGGCATTTGACAGGATTTGTTTTCGTGAGCGTTGGTTGGCTATTGTTTTTATGCATCAAGTTTCCAGTTCATAA

Homology

[Close]

BLAST of CmoCh15G014740 vs. Swiss-Prot
Match: LC7L3_BOVIN (Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Sbjct: 7  LLDELMGRDRNLAPDEKRS--NVRWDHESVCKYYLCGFCPAELFTNTRSDLG 56

[Close]

BLAST of CmoCh15G014740 vs. Swiss-Prot
Match: LC7L3_HUMAN (Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Sbjct: 7  LLDELMGRDRNLAPDEKRS--NVRWDHESVCKYYLCGFCPAELFTNTRSDLG 56

[Close]

BLAST of CmoCh15G014740 vs. Swiss-Prot
Match: LC7L3_MOUSE (Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Sbjct: 7  LLDELMGRDRNLAPDEKRS--NVRWDHESVCKYYLCGFCPAELFTNTRSDLG 56

[Close]

BLAST of CmoCh15G014740 vs. Swiss-Prot
Match: LC7L3_PONAB (Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Sbjct: 7  LLDELMGRDRNLAPDEKRS--NVRWDHESVCKYYLCGFCPAELFTNTRSDLG 56

[Close]

BLAST of CmoCh15G014740 vs. TrEMBL
Match: A0A0A0KRS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172900 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLL 60
          MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  
Sbjct: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of CmoCh15G014740 vs. TrEMBL
Match: A0A072TKA2_MEDTR (LUC7 amino-terminal protein OS=Medicago truncatula GN=MTR_0004s0480 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMGSARN+TEEERRGYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGSARNMTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. TrEMBL
Match: B7FKK0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMGSARN+TEEERRGYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGSARNMTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. TrEMBL
Match: C6TJZ0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-25
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMG+ARNLTEEER+GYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. TrEMBL
Match: C6THB0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-25
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMG+ARNLTEEER+GYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. TAIR10
Match: AT5G51410.1 (AT5G51410.1 LUC7 N_terminus domain-containing protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-26
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMG+ARNLT+EERRG+KEV WDD+EVC FYMVRFCPHDLFVNT+SDLG
Sbjct: 1  MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. NCBI nr
Match: gi|449451769|ref|XP_004143633.1| (PREDICTED: luc7-like protein 3 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLL 60
          MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  
Sbjct: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of CmoCh15G014740 vs. NCBI nr
Match: gi|659073051|ref|XP_008467232.1| (PREDICTED: luc7-like protein 3 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLL 60
          MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  
Sbjct: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of CmoCh15G014740 vs. NCBI nr
Match: gi|502146194|ref|XP_004506345.1| (PREDICTED: luc7-like protein 3 [Cicer arietinum])

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMGSARNLTEEERRGYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGSARNLTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. NCBI nr
Match: gi|922328427|ref|XP_013443606.1| (LUC7 amino-terminal protein [Medicago truncatula])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMGSARN+TEEERRGYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGSARNMTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

[Close]

BLAST of CmoCh15G014740 vs. NCBI nr
Match: gi|217073848|gb|ACJ85284.1| (unknown [Medicago truncatula])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG 59
          MDAQRALLDELMGSARN+TEEERRGYKEV WDDKEVCGFYMVRFCPHDLFVNTRSDLG
Sbjct: 1  MDAQRALLDELMGSARNMTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLG 58

The following BLAST results are available for this feature:

BLAST of CmoCh15G014740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LC7L3_BOVIN	4.1e-10	57.69	Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1	[more]
LC7L3_HUMAN	4.1e-10	57.69	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	[more]
LC7L3_MOUSE	4.1e-10	57.69	Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1	[more]
LC7L3_PONAB	4.1e-10	57.69	Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1	[more]

BLAST of CmoCh15G014740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRS2_CUCSA	2.2e-26	96.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172900 PE=4 SV=1	[more]
A0A072TKA2_MEDTR	2.4e-25	96.55	LUC7 amino-terminal protein OS=Medicago truncatula GN=MTR_0004s0480 PE=4 SV=1	[more]
B7FKK0_MEDTR	2.4e-25	96.55	Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
C6TJZ0_SOYBN	7.0e-25	94.83	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
C6THB0_SOYBN	7.0e-25	94.83	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CmoCh15G014740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51410.1	2.5e-26	87.93	LUC7 N_terminus domain-containing protein	[more]

BLAST of CmoCh15G014740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451769\|ref\|XP_004143633.1\|	3.1e-26	96.72	PREDICTED: luc7-like protein 3 [Cucumis sativus]	[more]
gi\|659073051\|ref\|XP_008467232.1\|	3.1e-26	96.72	PREDICTED: luc7-like protein 3 [Cucumis melo]	[more]
gi\|502146194\|ref\|XP_004506345.1\|	2.0e-25	98.28	PREDICTED: luc7-like protein 3 [Cicer arietinum]	[more]
gi\|922328427\|ref\|XP_013443606.1\|	3.4e-25	96.55	LUC7 amino-terminal protein [Medicago truncatula]	[more]
gi\|217073848\|gb\|ACJ85284.1\|	3.4e-25	96.55	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004882	Luc7-rel

Vocabulary: **Molecular Function**
Term	Definition
GO:0003729	mRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005685	U1 snRNP

Vocabulary: **Biological Process**
Term	Definition
GO:0006376	mRNA splice site selection

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006376	mRNA splice site selection
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014740.1	CmoCh15G014740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004882	Luc7-related	PANTHER	PTHR12375	RNA-BINDING PROTEIN LUC7-RELATED	coord: 1..58 score: 5.1
IPR004882	Luc7-related	PFAM	PF03194	LUC7	coord: 2..58 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 1..21 scor
None	No IPR available	PANTHER	PTHR12375:SF18	LUC7-LIKE PROTEIN 3	coord: 1..58 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G014740	Cucsa.166510	Cucumber (Gy14) v1	cgycmoB0467
CmoCh15G014740	CmaCh15G014030	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G014740	CmaCh02G010370	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G014740	Cla002344	Watermelon (97103) v1	cmowmB264
CmoCh15G014740	Csa5G172900	Cucumber (Chinese Long) v2	cmocuB278
CmoCh15G014740	MELO3C005382	Melon (DHL92) v3.5.1	cmomeB244
CmoCh15G014740	ClCG01G005490	Watermelon (Charleston Gray)	cmowcgB244
CmoCh15G014740	CSPI05G08320	Wild cucumber (PI 183967)	cmocpiB287
CmoCh15G014740	Lsi09G005800	Bottle gourd (USVL1VR-Ls)	cmolsiB248
CmoCh15G014740	Cp4.1LG13g00380	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G014740	Cp4.1LG05g06790	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G014740	MELO3C005382.2	Melon (DHL92) v3.6.1	cmomedB277
CmoCh15G014740	CsaV3_5G005710	Cucumber (Chinese Long) v3	cmocucB0336
CmoCh15G014740	Cla97C01G005710	Watermelon (97103) v2	cmowmbB267
CmoCh15G014740	Bhi12G000495	Wax gourd	cmowgoB0373
CmoCh15G014740	CsGy5G005710	Cucumber (Gy14) v2	cgybcmoB573
CmoCh15G014740	Carg08439	Silver-seed gourd	carcmoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G014740	CmoCh02G010520	Cucurbita moschata (Rifu)	cmocmoB247

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G014740	Silver-seed gourd	carcmoB1004
CmoCh15G014740	Watermelon (97103) v1	cmowmB270