CmoCh15G014620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G014620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MADS-box transcription factor 2
Location	Cmo_Chr15 : 9923270 .. 9929977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAGAAGCTGAAATGACGGCAAAGAAAATTGAGGAACTTGAAAAGTCACAAAAGTATGTAATCTTAAACTTCCCATATTGTTTAACAATTACATGCTTCATTTCTAGGAATGGTCATATTTACATGTTTTTTAATTATTTTAATGTTTTTTAAGGTTAATTCGTTTGGTAGGAAGTGTCATATTTACATATGTTTAAGGTTAATTCATTTTGTAGGAAGTGTCATATCTACATGCTTTTTAAGGTTAATACATTTCTTAGGAAGGTTAATGCATTTCTTAGGAAGTGTCATATCTACATGTTTTTTAAGGTTAATGCATTTTTTAGGAAGTGTCATATCTACGTGTTTTTTAAAGTTAATACATTTCTTAGGAAGTGTCATATCTACATGTTGTTTTTAAAGTTAATTCATTTACGAGGAACTGGCATATCTACCTGTTTTTAAAATTAATTCATTTCTTAGGAAATTCATATCTACATATTTTTTTTTAAAGTTAATTCACTTATGAGGAAGTATCATATCTATATGTTTTTTTTAAAGTTAATTCATTTATTAGGATTCACTTATGAGGAAGTATCATATCTATATGTTTTTTTTAAAGTTAATTCATTTATTAGGAAGTGTCATATTTACATGTTTTTTTTAAAGTTATTTCATTTCTTAGGAAGTGTCATATCTACATGTTTTTTTAAGGTTAATTCATTTCTTAGGAAGTGTCATATTTACATGTTTTTTTTAAGGTTAATTCATTTCTTAGGAAGTGTCATATCTCCATGTTTTTTAAGGTTAATTCATTTATTAGGAAGTGTCATATCTACCTGTTTTTTAAGGTTAATGCATTTTTTAGAAAGTGTCATATCTACGTATTTTTTAAGGGTAATGCATTTTTTAGGAAGTGTCATATCTATGTTTTTTTTAAGGTTGATGCATTTCTTAGGAAGTGTCATTTCTACATGTTTTTTTAAGGTATATGCATTTCTTAGGAAGTGTCATATCTACATGTTTTTTTTATGGTTAATGCATTTCTTAGGAAGTGTCATATCTACATGTTTTTTTAGGGTTAAATTCATTTATGAGAAAGTGTCATATCCACATGTTTTTTAAAGTTAATTCATTTCTTAGGAAGTTCATATCTACATGTTTTTTTAAGGTTAATTCATTTATGAGGAAGTGTCATATCTACCTGTTTTTTTTTAAGTTAGTTCATTTCTTAGGAAGTTTATATCTACATATTTTTTTTAAGGTTAATTTATTTATGAAGAAGTATCATGTCTACATATTTTTTAAAAGTTAATTCATTAATTAGGAAGTGTCATATCTACATGTTTTTTTTTTAAAATTTTTTTTAGGTTAATTCATTTCTTAGAAAGTGTCATATCTACATATTTTTCAAGGTTAATTCATTTATTAGGAAGTGTCATATCTACATGTTTTTTTAAGGTTAATTCAATTCTTACGAACGGTCATATCTACATATTTTTTTAAGGTTAATTCATTTCTTAGGAAGTGTCATATCTACATATTTTTCAAGGTTAATTCATTTATTAGGAAGTGTCATATCTACATGTTTTTTAAGGTTAATTCATTTCTTAAGAAGTGTCATATCTACATGTTTTTTTAAGGTTAATTCATTTCTTAAGAAGTTCATATTTTAAAAAACTAAGGTTAATTCATTTCTTAGGAAGTCTCATCCCTACATGTTTTTTAAGGTTAATTCATTTCTTAAGAAGTGTCGTATCTATTTGTTTTTCAAGGTTAATTCATTTATTAAGAAGTGTCATATCTACATGTTTTTTTAAGGTTAATTCATTTCTTAGGAAGTCTCATATCTACATGTTTTTTAAGGTTAATTCATTTCTTAAGAAGTGTCATATCTACATGTTTTTCAAGGTTAATTCATTTCTTAAGAAGTGTCATATCTACATGTTTTTTAAGGTTAATTCATTTATTAGGAAGTCTCATTTCTACCTATATTTTAAGGTTAATTCATTTCTTAAGAAGTTCATATTTTAAAAAACTAAGGTTAATTCATTTCTTAGGGAGTGTCATATTTACATGTTTTTTTTAGGTTAATTCATTTTTTAGGAAGTGTCATATCTACATGTTTTTCAAGGTTAATTCATTTTCTAGGAAGTTCATATCTTCATGGTTTTTAAGGTTAATTCATTTCTTAGGAAGCTTTTGGGACGAGGCTTAGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAACAAAGGTACTTGAAATTTAAAAGTTCTTCCAGAATTCAAGCTGCAAAACTTCCAACTAGTTAGTTCATTGTTTTGGTGGTAAACATTAATACCTGAATTTAAAAACATGTCGGAAATTGTTCTTTTGTTACAGGCTTTGCTGTTTAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGTAATTTCAATATAATTTAAAAAAAATCTAATCAAGGAATTGCTCAAACTAACTAAAAAGTAGTTGAACTCATCACTATAAAGCCTATCAAATAAAGGTTATATGTACCAACTCTCTTGAGATTGGAGGTTCAAAATCCCATGTGTCTACGTACTTTTCATGTGACACCCGAATGAAGGAGGGGTATCTGAATAAACTAAGACCATATTTGAATGAGAGCTATCAAGAGGATTTAATGCCTTGAAAAGACTTAAAAGACTTGAAAATTACTATATATACGAACAAAATGTCCTTTCCTTTTTGGTGGTTCAATCATAAGAACTTCATAGTTAACCATGTTTTATTTGGAGAAATTCTAGGTTGGATGACCTCTTGGAAATTATTCGAGGATGTATGTAAGTGAGGATAAGGCGGAAGTTGGTGGGCTTGTGACACCCGAGTAAAAGAGGGTTATATGAATGAACCAAGATCACATCCAAATGAGAGTGATCCCGAGGATAGAATGTCCACAGTTATACCACCAACAAGGTGCACCTCCTTTTTTGGTGGCTTAATGATAGGAAATCAATAGTAAACGTGGTTTACTTGGAGCAATTCTTGGTTGGGTGACCTCTTGAGAGTAGTCCTCACTCTGAGAACAAAGGAGTAAGTAATGTGACCATATTGCAGGGGAATGTACCTCTCCTTTACCTAGACGTCACATGTCCACCAACTCCCACCTTGGTTTGTCTTCAAACCACATCCTACTAGGAGATGTTTTGCTTTGATACCATATGTAATACTCCACATCCAGGATTCGAACCAAGATTTGGAACCTGGATTCAACAATCAACATTTTCGTGCATTCCCTACAACATCTTCTAAAAGTGAAAACTATCCCCATAGACCAACACGAGTCTTTTTAACGTATTCTTTCCTTACATGTTTTCTACGAAAATTTTCAAGAGTTCATCTAATATAGGTTTAGAATTCCTATGATTAAGTTACCAAAAAGGAATGTGTACCTTGTTGCTATAGGCAGGAACTAGAAATTCTTTTAAACCTTTCTTAACCATCATATCCTTAGAATCACTGTGATTCTAATGTGATCTCGGTTGATTCATATATCTTTTTATTTGAGCGTCACATCTTTACTTATTTATTAAGAATTATGTGATAATTTTTCTCGTTACTTTGATATAATTTTGGAGACGTATAATAGTTACAAATCACTCTCCGAAAATCTAAATTGATTCACACGTGAAAGTTTAGGGTTTAGTTCTGAGTCGGGCTTAATGATATTGCAAGCAGTTTGAATTTTGTCTGTGAAACCCTAGTGGAGAAATCAAACATCATCCATTCATTCTTTCCATGTTACCTTCTTTGTTCTTGTGAGCTCTTATGTTTGTATAGGCCACTCCTTGGAACCCATGATTGTTTGGATGAATACTATATATTAAGAGCTTTCTCGAGCCTTTATAGTTTGGAACTTGCAAAGAAAATTAGGATTTAAGGAAGATAAGAGATTCAAACCTGAGAATAGTTTCTTACGCATTCCAAATAAATAGCCTACCCTCGTCTAACAACAAAACACTCTTCATAAGGGTGTGAAAACTTCTCCCTAGTAGACACGTTTTAAAATCTTGAGGGAAAGCCGGGAAGGAAAAGCCCAAATAGGACAATATCTACTAGTGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACTAGGTGGGCCATGTGCCAATGAGGTGGTTGAACCCTAAAGGAGGGTGGACATCAGGTGGTGTGCCAACGAGGACACTGGGCCACGAATGAGGATGGATTGTGAGATCCTACATCGGTTGGAGAGGGCAAAAAAGCACGCTAGCAAATACGCTGGGTCTCAAAAGGGGGTGGATTGTGAGATCCTACATTAGTTGGAGAGGGAAACAAATCACTCCTTATAAGCGTGTGAAAATTTTTTCCCCTCAACAAAAGCCCAAAGAGTACAATATCTACTAGCAGTGGGTTTGGATGGTTACAAATAGTATCAGAGCCAGACACCGGGTGGGGCAATGTGCCAACAAGGTGGTTGAACCCTAAACGAGGATGGACATCAGGTGGTGTGCCAGTAAGGAGAATGTTGGGCCCTGAAAGGGAATGAATTGGGGGGTCCCACATCGATTAGAGAGGAGAACGAGTGCCTACTTACACACATAAAGTAATTATAGGCACAGGGAACATGAGTATCTTCTATCAACGAAGGCAGTACAAAAGGGTAGGAACAAACACTTTTAAACCGTGAATCTACAAAGTTGACGAGAAAAACTTTACATAGATAGTCCTTATATAGGTCTTTTGAAACATCCTCCATGGTCATGCATGTATCAATATTAAATAACGAATCTACCTAATACATGTATCATCGTTACAGTGATACACGAATAATCTAATACACGTATCTAACTCTCGCGACTCTTCAAATATTAACCAAATACATGATTCTCTCACGTACATGTATCCCACAAATTCATATATCGACCGTGCATGTATAAGTCGATTATTTTAGCTATTTATTTTTGTTGAATCTCAGGGGAAACTCCTTATAGAAGAAAACAAAAAGTTATCTGCTAAGGTAAGGCCTTATTTTTGTATTGTTCTTTGAAAATATTGCAATATAGATTGTTTTCTTCTTCATGTTCATACATTTATTTGGGAGTTCATTACAAATTAGTGTGGTACTAAGCCATGGGAACAAGGAGGTATTGAAGCAGAGGGAGGCATAATGAGCTTATGCAGCCAAAGTAGACAGGGTTCTGATATACAGACTGAATTGTTCATTGGATTGTCTTGCTCATAATTGGAGGATGGGTATAGCTATGTTCAAATTTGCAAACATTGTAAGCCTCTTGGTTTTAACTCTTTAAGTTCTATGTAAATCTTTTATCCAACCCAATGAAATATGATATAGAAATATGATCTAGAATGTGTTATAATATCTTATGTATACATGTTTAGATTTTGAAAATAGGATTAAGCTATGAAATGGGTTATTAGTTCTTGTAACTTCAGAAATGAATCACGCCAATTTGAACATATCTCAACTAGTTTAAGTATATATTCTCGATCGAGACGTTAGAAATTCAATTATTTTTGTTATGTAAATGTCACTGAATGAGTAACTGCTTTAGTTGAGATTTGAAGAATAGAAGTGTGAAGTGACCCTCAGGCACTTGAACCTGTTTGGATTGATTCGTACATTAGACTTTACACCTATATGTTCACATCGGTTGGAGAAGAGAATAAAACATTTTTTTATTAGGGTGTGAAAACCATAATATCTGTTAGTGGGGTGGGTTTTGGCTATTACAAATGATATAAGAGCCAAATACTAGGCAATGTGCGAGCAAAGAAGCTGAGCCCAAAAGGGTTGAACACGAGGTCAACAAGGATACAGGGCCCTGAAAGGGGTGGATTGGGGAATCTCACATCGATTGGAGAAGGGAACGAGTGCTAGCAATTGGCCCTAAAAGGGGTGGATTGGGGAATCCCACATCGATTGGAGAAGGAAACGAGTGCCAACCATGGGCCCTGAAGGAGGTGGATTGGGGAATCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCATAGACACTAGACCCCAATCGAGTCCCACATCGATCGTGTGGGAGTAAAACTAAAATGTATCAATTGTGAATTGAGAGTGTTCTAATAACAACAATTAGTGTTGATGAATATACATTTTATAACACTTACAACAACCCAAACAATGAACAACAACCAATGCTCTTCAGATCACTGTTAAAGAAACGAGAATGAATAAAGCATTTATTAGAAGACAAGGTGTGCTGTGGGCAACACTATAAAATGAGCTCAAATCTCACTCACCTAACCACAAACGAAACTCAAATTACATTTAGCCTAATTGAAACAAACCAAACACACCTAAAAACACTTGTTATCATACAGTGCTGGCATTGGACAACATTTCTAGGACAGCTTCTTTCGTCGGTAGAGCTGGAATCGCTCCTCTCTCCATCACCGTGATGGCGCCACAGGCATTCGCAAAGCGTAGAGCGTCTCGCAGCCGTTGCTCGTCCTGCCAGAGGAAAACTCAGATGTAAATAAGAACCAGTATAGCCATCCTTTTGTTTCATTAGGCAAGAACAAATGGAACCTGAAAAAGGCTCGGGTCTGAAGCTAAGCAAAACAATATCCCGCTCACGAACGCATCGCCAGCTCCGGTCGTGTCGATGGGGTTGGCTTTAA

mRNA sequence

ATGGAGCAAGAAGCTGAAATGACGGCAAAGAAAATTGAGGAACTTGAAAAGTCACAAAAGTATGTTAATTCGTTTGGTAGGAAGTGTCATATTTACATATGTTTAAGGAAGTGTCATATCTACATGCTTTTTAAGGTTAATTCATTTCTTAGAAAGTGTCATATCTACATATTTTTCAAGGTTAATTCATTTCTTAGGAAGCTTTTGGGACGAGGCTTAGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAACAAAGGCTTTGCTGTTTAAGGAGCAGAAAGAGAAGCTGATTGAAAAGTGTGGTACTAAGCCATGGGAACAAGGAGGTATTGAAGCAGAGGGAGGCATAATGAGCTTATGCAGCCAAAGTAGACAGGTGCTGGCATTGGACAACATTTCTAGGACAGCTTCTTTCGTCGGTAGAGCTGGAATCGCTCCTCTCTCCATCACCGTGATGGCGCCACAGGCATTCGCAAAGCGTAGAGCGTCTCGCAGCCGTTGCTCGTCCTGCCAGAGGAAAACTCAGATGCAAGAACAAATGGAACCTGAAAAAGGCTCGGGTCTGAAGCTAAGCAAAACAATATCCCGCTCACGAACGCATCGCCAGCTCCGGTCGTGTCGATGGGGTTGGCTTTAA

Coding sequence (CDS)

ATGGAGCAAGAAGCTGAAATGACGGCAAAGAAAATTGAGGAACTTGAAAAGTCACAAAAGTATGTTAATTCGTTTGGTAGGAAGTGTCATATTTACATATGTTTAAGGAAGTGTCATATCTACATGCTTTTTAAGGTTAATTCATTTCTTAGAAAGTGTCATATCTACATATTTTTCAAGGTTAATTCATTTCTTAGGAAGCTTTTGGGACGAGGCTTAGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAACAAAGGCTTTGCTGTTTAAGGAGCAGAAAGAGAAGCTGATTGAAAAGTGTGGTACTAAGCCATGGGAACAAGGAGGTATTGAAGCAGAGGGAGGCATAATGAGCTTATGCAGCCAAAGTAGACAGGTGCTGGCATTGGACAACATTTCTAGGACAGCTTCTTTCGTCGGTAGAGCTGGAATCGCTCCTCTCTCCATCACCGTGATGGCGCCACAGGCATTCGCAAAGCGTAGAGCGTCTCGCAGCCGTTGCTCGTCCTGCCAGAGGAAAACTCAGATGCAAGAACAAATGGAACCTGAAAAAGGCTCGGGTCTGAAGCTAAGCAAAACAATATCCCGCTCACGAACGCATCGCCAGCTCCGGTCGTGTCGATGGGGTTGGCTTTAA

Homology

[Close]

BLAST of CmoCh15G014620 vs. Swiss-Prot
Match: AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEK 114
           RKLLG+G+ SCS EE++EI+ QL  SL ++RE KA LFKEQ EKL  K
Sbjct: 109 RKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAK 156

[Close]

BLAST of CmoCh15G014620 vs. TrEMBL
Match: A0A0A0KL39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172800 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIE------------- 125
           +KLLGRGLDSCSFEE+REIE+QL+LSLTRIRETKA LFKEQKEKLIE             
Sbjct: 109 QKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLS 168

Query: 126 -KCGTKPWEQGGIEAEGGI---MSLCSQSRQVLALDNISRTASFVG 155
            KCGTKPW++ G+E +GGI    +LCSQS    A D+  +T  F+G
Sbjct: 169 AKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIG 214

[Close]

BLAST of CmoCh15G014620 vs. TrEMBL
Match: D1MFS7_HEVBR (MADS-box transcription factor 2 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKE--------------KLI 121
           RKLLG GLDSC+ EE+++IE+QL  S++ IR  K  +FKEQ E              +L 
Sbjct: 109 RKLLGEGLDSCTVEELQQIEQQLERSVSSIRARKNQVFKEQIERLKEKESQLAAENARLS 168

[Close]

BLAST of CmoCh15G014620 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEK 114
           RKLLG+G+ SCS EE++EI+ QL  SL ++RE KA LFKEQ EKL  K
Sbjct: 109 RKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAK 156

[Close]

BLAST of CmoCh15G014620 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKL 111
           RKLLG G+D+CS EE++++E QL  SL+RIR  K  L +E+ EKL
Sbjct: 108 RKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKL 152

[Close]

BLAST of CmoCh15G014620 vs. TAIR10
Match: AT5G51870.3 (AT5G51870.3 AGAMOUS-like 71)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-06
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEK 114
           RKLLG+GLDSCS  E++EI+ Q+  SL  +R  KA L+ +Q +KL EK
Sbjct: 110 RKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEK 157

[Close]

BLAST of CmoCh15G014620 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEK 114
           RKLLG G+ +CS EE+++IE+QL  S+  IR  K  +FKEQ E+L +K
Sbjct: 109 RKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQK 156

[Close]

BLAST of CmoCh15G014620 vs. NCBI nr
Match: gi|778700554|ref|XP_011654887.1| (PREDICTED: MADS-box protein SOC1 isoform X2 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIE------------- 125
           +KLLGRGLDSCSFEE+REIE+QL+LSLTRIRETKA LFKEQKEKLIE             
Sbjct: 109 QKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLS 168

Query: 126 -KCGTKPWEQGGIEAEGGI---MSLCSQSRQVLALDNISRTASFVG 155
            KCGTKPW++ G+E +GGI    +LCSQS    A D+  +T  F+G
Sbjct: 169 AKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIG 214

[Close]

BLAST of CmoCh15G014620 vs. NCBI nr
Match: gi|449451791|ref|XP_004143644.1| (PREDICTED: MADS-box protein SOC1 isoform X1 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIE------------- 125
           +KLLGRGLDSCSFEE+REIE+QL+LSLTRIRETKA LFKEQKEKLIE             
Sbjct: 124 QKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLS 183

Query: 126 -KCGTKPWEQGGIEAEGGI---MSLCSQSRQVLALDNISRTASFVG 155
            KCGTKPW++ G+E +GGI    +LCSQS    A D+  +T  F+G
Sbjct: 184 AKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIG 229

[Close]

BLAST of CmoCh15G014620 vs. NCBI nr
Match: gi|659073095|ref|XP_008467250.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEK 114
           +KLLGRGLDSCSFEE+REIE+QL+LSLTRIRETKA LFK+QKEKLIEK
Sbjct: 109 QKLLGRGLDSCSFEELREIERQLVLSLTRIRETKAQLFKDQKEKLIEK 156

[Close]

BLAST of CmoCh15G014620 vs. NCBI nr
Match: gi|823186328|ref|XP_012489822.1| (PREDICTED: MADS-box protein SOC1 isoform X1 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-06
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKEKLIEKCGTKPWEQGGIE 125
           RKLLG  L SC+ EE+++IE+QL  S+TR+R  KA +FK+Q EKL E    K    G  E
Sbjct: 109 RKLLGENLGSCTLEELQQIEQQLERSVTRVRARKAKVFKDQIEKLKE----KDLVTGPNE 168

Query: 126 AEGGIMSLCSQSRQVLALDN 146
            E  +  + +Q  +VLA +N
Sbjct: 169 KEFLVQPMVTQKEEVLAAEN 184

[Close]

BLAST of CmoCh15G014620 vs. NCBI nr
Match: gi|269314025|gb|ACZ36915.1| (MADS-box transcription factor 2 [Hevea brasiliensis])

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-06
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 66  RKLLGRGLDSCSFEEVREIEKQLILSLTRIRETKALLFKEQKE--------------KLI 121
           RKLLG GLDSC+ EE+++IE+QL  S++ IR  K  +FKEQ E              +L 
Sbjct: 109 RKLLGEGLDSCTVEELQQIEQQLERSVSSIRARKNQVFKEQIERLKEKESQLAAENARLS 168

The following BLAST results are available for this feature:

BLAST of CmoCh15G014620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL42_ARATH	3.1e-07	62.50	MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1	[more]

BLAST of CmoCh15G014620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL39_CUCSA	2.1e-23	60.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172800 PE=4 SV=1	[more]
D1MFS7_HEVBR	5.3e-06	47.83	MADS-box transcription factor 2 OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of CmoCh15G014620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62165.1	1.7e-08	62.50	AGAMOUS-like 42	[more]
AT4G22950.1	1.2e-06	55.56	AGAMOUS-like 19	[more]
AT5G51870.3	3.6e-06	54.17	AGAMOUS-like 71	[more]
AT2G45660.1	8.1e-06	52.08	AGAMOUS-like 20	[more]

BLAST of CmoCh15G014620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778700554\|ref\|XP_011654887.1\|	3.1e-23	60.38	PREDICTED: MADS-box protein SOC1 isoform X2 [Cucumis sativus]	[more]
gi\|449451791\|ref\|XP_004143644.1\|	3.1e-23	60.38	PREDICTED: MADS-box protein SOC1 isoform X1 [Cucumis sativus]	[more]
gi\|659073095\|ref\|XP_008467250.1\|	2.9e-13	87.50	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|823186328\|ref\|XP_012489822.1\|	7.6e-06	45.00	PREDICTED: MADS-box protein SOC1 isoform X1 [Gossypium raimondii]	[more]
gi\|269314025\|gb\|ACZ36915.1\|	7.6e-06	47.83	MADS-box transcription factor 2 [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009838	abscission
biological_process	GO:0080187	floral organ senescence
biological_process	GO:0010150	leaf senescence
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014620.1	CmoCh15G014620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 65..113 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G014620	ClCG01G005350	Watermelon (Charleston Gray)	cmowcgB244
CmoCh15G014620	Cp4.1LG13g00520	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G014620	Cp4.1LG05g06920	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G014620	MELO3C005393.2	Melon (DHL92) v3.6.1	cmomedB277
CmoCh15G014620	CsaV3_5G005600	Cucumber (Chinese Long) v3	cmocucB0336
CmoCh15G014620	Cla97C01G005560	Watermelon (97103) v2	cmowmbB267
CmoCh15G014620	Bhi12G000642	Wax gourd	cmowgoB0365
CmoCh15G014620	CsGy5G005590	Cucumber (Gy14) v2	cgybcmoB573
CmoCh15G014620	Carg20784	Silver-seed gourd	carcmoB1004
CmoCh15G014620	Carg08452	Silver-seed gourd	carcmoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G014620	CmoCh02G010410	Cucurbita moschata (Rifu)	cmocmoB247

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G014620	Cucumber (Gy14) v1	cgycmoB0277
CmoCh15G014620	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G014620	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G014620	Wild cucumber (PI 183967)	cmocpiB287
CmoCh15G014620	Cucumber (Chinese Long) v2	cmocuB278
CmoCh15G014620	Melon (DHL92) v3.5.1	cmomeB244
CmoCh15G014620	Watermelon (97103) v1	cmowmB264
CmoCh15G014620	Watermelon (97103) v1	cmowmB270
CmoCh15G014620	Bottle gourd (USVL1VR-Ls)	cmolsiB248