CmoCh15G013990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G013990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr15 : 9521889 .. 9522110 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

mRNA sequence

ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

Coding sequence (CDS)

ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

Homology

[Close]

BLAST of CmoCh15G013990 vs. TrEMBL
Match: A0A0A0KM75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-12
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 52
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51

[Close]

BLAST of CmoCh15G013990 vs. TrEMBL
Match: V4TGD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023227mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSS 57
          M+LV+++AE++EEYTVLL  VL  LFH APFPRRVRFLIL NLPF ++SSS+S+ S
Sbjct: 1  MILVAIVAELMEEYTVLLARVLEHLFHDAPFPRRVRFLILRNLPFVSSSSSASAFS 56

[Close]

BLAST of CmoCh15G013990 vs. TrEMBL
Match: B9I0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15240g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-10
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNS 50
          M+LV+++AE++EEYT LLT VL  LF+ APFPRRVRFLILHNLPFA+++
Sbjct: 1  MILVAIMAELMEEYTALLTSVLEHLFNEAPFPRRVRFLILHNLPFASSA 49

[Close]

BLAST of CmoCh15G013990 vs. TrEMBL
Match: A0A0J8B9Y9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g095690 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-08
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFAN 48
          MMLVSV+AE+LEEYTV+LT VL  LF+  P PRR+RFLIL +LPFA+
Sbjct: 1  MMLVSVVAEMLEEYTVVLTRVLEHLFNEVPLPRRIRFLILRHLPFAS 47

[Close]

BLAST of CmoCh15G013990 vs. TrEMBL
Match: A0A0K9QXW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133760 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-08
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN 49
          MMLVSV+AE+LEEYTV+L  +L  +F+ AP PRR+RFLIL NLPF ++
Sbjct: 1  MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSS 48

[Close]

BLAST of CmoCh15G013990 vs. TAIR10
Match: AT1G33055.1 (AT1G33055.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-08
Identity = 26/51 (50.98%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 52
          M+LV+++AE+++EYTV+L  V+  LF  APFPRR+R  IL++LPF ++++S
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTS 51

[Close]

BLAST of CmoCh15G013990 vs. NCBI nr
Match: gi|659074192|ref|XP_008437471.1| (PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 43/54 (79.63%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 55
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFPRRVRFLILHNLPFA+  ++ S+
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

[Close]

BLAST of CmoCh15G013990 vs. NCBI nr
Match: gi|778699144|ref|XP_011654666.1| (PREDICTED: uncharacterized protein LOC105435431 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 52
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51

[Close]

BLAST of CmoCh15G013990 vs. NCBI nr
Match: gi|567893378|ref|XP_006439177.1| (hypothetical protein CICLE_v10023227mg [Citrus clementina])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSS 57
          M+LV+++AE++EEYTVLL  VL  LFH APFPRRVRFLIL NLPF ++SSS+S+ S
Sbjct: 1  MILVAIVAELMEEYTVLLARVLEHLFHDAPFPRRVRFLILRNLPFVSSSSSASAFS 56

[Close]

BLAST of CmoCh15G013990 vs. NCBI nr
Match: gi|568844758|ref|XP_006476250.1| (PREDICTED: uncharacterized protein LOC102622261 [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSS 57
          M+LV+++AE++EEYTVLL  VL  LFH APFPRRVRFLIL NLPF ++SSS+S+ S
Sbjct: 1  MILVAIVAELMEEYTVLLARVLEHLFHDAPFPRRVRFLILRNLPFVSSSSSASAFS 56

[Close]

BLAST of CmoCh15G013990 vs. NCBI nr
Match: gi|224115468|ref|XP_002317041.1| (hypothetical protein POPTR_0011s15240g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-10
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNS 50
          M+LV+++AE++EEYT LLT VL  LF+ APFPRRVRFLILHNLPFA+++
Sbjct: 1  MILVAIMAELMEEYTALLTSVLEHLFNEAPFPRRVRFLILHNLPFASSA 49

The following BLAST results are available for this feature:

BLAST of CmoCh15G013990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G013990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM75_CUCSA	2.7e-12	80.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146820 PE=4 SV=1	[more]
V4TGD6_9ROSI	2.0e-10	67.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023227mg PE=4 SV=1	[more]
B9I0P7_POPTR	5.7e-10	69.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15240g PE=4 SV=1	[more]
A0A0J8B9Y9_BETVU	4.1e-08	70.21	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g095690 PE=4 S...	[more]
A0A0K9QXW6_SPIOL	7.0e-08	64.58	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133760 PE=4 SV=1	[more]

BLAST of CmoCh15G013990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33055.1	4.8e-08	50.98	unknown protein	[more]

BLAST of CmoCh15G013990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074192\|ref\|XP_008437471.1\|	1.0e-12	79.63	PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo]	[more]
gi\|778699144\|ref\|XP_011654666.1\|	3.9e-12	80.39	PREDICTED: uncharacterized protein LOC105435431 [Cucumis sativus]	[more]
gi\|567893378\|ref\|XP_006439177.1\|	2.8e-10	67.86	hypothetical protein CICLE_v10023227mg [Citrus clementina]	[more]
gi\|568844758\|ref\|XP_006476250.1\|	2.8e-10	67.86	PREDICTED: uncharacterized protein LOC102622261 [Citrus sinensis]	[more]
gi\|224115468\|ref\|XP_002317041.1\|	8.2e-10	69.39	hypothetical protein POPTR_0011s15240g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G013990.1	CmoCh15G013990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G013990	Cucsa.193310	Cucumber (Gy14) v1	cgycmoB0562
CmoCh15G013990	CmaCh15G013380	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G013990	Cla004976	Watermelon (97103) v1	cmowmB267
CmoCh15G013990	Csa5G146820	Cucumber (Chinese Long) v2	cmocuB286
CmoCh15G013990	ClCG01G001300	Watermelon (Charleston Gray)	cmowcgB247
CmoCh15G013990	Cp4.1LG00g00890	Cucurbita pepo (Zucchini)	cmocpeB262
CmoCh15G013990	CsaV3_5G001430	Cucumber (Chinese Long) v3	cmocucB0347
CmoCh15G013990	Carg21327	Silver-seed gourd	carcmoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G013990	Cucumber (Gy14) v2	cgybcmoB583
CmoCh15G013990	Melon (DHL92) v3.6.1	cmomedB270
CmoCh15G013990	Silver-seed gourd	carcmoB0965
CmoCh15G013990	Watermelon (97103) v2	cmowmbB270
CmoCh15G013990	Wax gourd	cmowgoB0368
CmoCh15G013990	Cucurbita moschata (Rifu)	cmocmoB247
CmoCh15G013990	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G013990	Wild cucumber (PI 183967)	cmocpiB295
CmoCh15G013990	Melon (DHL92) v3.5.1	cmomeB238
CmoCh15G013990	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G013990	Bottle gourd (USVL1VR-Ls)	cmolsiB255