ClCG01G001300 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G001300
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 1203760 .. 1204185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCGTAGCGGCCATTTTTGTAAGCTTCCTCTTCTCTCCCTTCAATTGGTATGATTTGATAATTTCATCTCACGATTTTCTTCTTCTTATGGTTTGATCTGTTCTTCGTTTATCGATCTCTGGATTGTTGTTTTTATGGATTTCGAATTTGAGTCGAAGGTGAATTGGATTTTGGATCTCTGTTTTCCTCTGTTTCAGATTGGGGACTGACGGCTGAGCGGTCGCCCCAGATTCATCGGCGGATTTTTTTTTTTTTTTCTTTTTTAATT

mRNA sequence

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGAGCGGTCGCCCCAGATTCATCGGCGGATTTTTTTTTTTTTTTCTTTTTTAATT

Coding sequence (CDS)

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGA

Protein sequence

MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG
Homology
[Close]
BLAST of ClCG01G001300 vs. TrEMBL
Match: A0A0A0KM75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-16
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

[Close]
BLAST of ClCG01G001300 vs. TrEMBL
Match: B9I0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15240g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.6e-10
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPF 46
          M+LV+++AE++EEYTA+L +VL  LF  APFPRRVRFLILHNLPF
Sbjct: 1  MILVAIMAELMEEYTALLTSVLEHLFNEAPFPRRVRFLILHNLPF 45

[Close]
BLAST of ClCG01G001300 vs. TrEMBL
Match: V4TGD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023227mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.6e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          M+LV+++AE++EEYT +LA VL  LF+ APFPRRVRFLIL NLPF    S  SA
Sbjct: 1  MILVAIVAELMEEYTVLLARVLEHLFHDAPFPRRVRFLILRNLPFVSSSSSASA 54

[Close]
BLAST of ClCG01G001300 vs. TrEMBL
Match: W1PKB8_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00018p00046710 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-09
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPS 51
          M+LV+++AE+LEEYT VLA VL QL + APFPRR+RFLIL +LPF   PS
Sbjct: 1  MILVAIVAELLEEYTVVLARVLEQLIHEAPFPRRMRFLILRSLPFISPPS 50

[Close]
BLAST of ClCG01G001300 vs. TrEMBL
Match: A0A0K9QXW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133760 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-09
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPF 46
          MMLVSV+AE+LEEYT VLA +L  +F  AP PRR+RFLIL NLPF
Sbjct: 1  MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPF 45

[Close]
BLAST of ClCG01G001300 vs. TAIR10
Match: AT1G33055.1 (AT1G33055.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSAL 56
          M+LV+++AE+++EYT VLA V+  LF  APFPRR+R  IL++LPF    + L  L
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTSLPLL 55

[Close]
BLAST of ClCG01G001300 vs. NCBI nr
Match: gi|659074192|ref|XP_008437471.1| (PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFPRRVRFLILHNLPF DRP+ LSA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

[Close]
BLAST of ClCG01G001300 vs. NCBI nr
Match: gi|778699144|ref|XP_011654666.1| (PREDICTED: uncharacterized protein LOC105435431 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-16
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

[Close]
BLAST of ClCG01G001300 vs. NCBI nr
Match: gi|658050022|ref|XP_008360721.1| (PREDICTED: uncharacterized protein LOC103424417 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPF 46
          M++V+VLAE++EEYT +LA VL  LFYSAPFPRRVRFLIL NLPF
Sbjct: 1  MIMVAVLAELMEEYTVLLARVLEHLFYSAPFPRRVRFLILRNLPF 45

[Close]
BLAST of ClCG01G001300 vs. NCBI nr
Match: gi|224115468|ref|XP_002317041.1| (hypothetical protein POPTR_0011s15240g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-10
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPF 46
          M+LV+++AE++EEYTA+L +VL  LF  APFPRRVRFLILHNLPF
Sbjct: 1  MILVAIMAELMEEYTALLTSVLEHLFNEAPFPRRVRFLILHNLPF 45

[Close]
BLAST of ClCG01G001300 vs. NCBI nr
Match: gi|743920596|ref|XP_011004349.1| (PREDICTED: uncharacterized protein LOC105110868 [Populus euphratica])

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-10
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPF 46
          M+LV+++AE++EEYTA+L +VL  LF  APFPRRVRFLILHNLPF
Sbjct: 1  MILVAIMAELMEEYTALLTSVLEHLFNEAPFPRRVRFLILHNLPF 45

The following BLAST results are available for this feature:
BLAST of ClCG01G001300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM75_CUCSA1.5e-1685.19Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146820 PE=4 SV=1[more]
B9I0P7_POPTR4.6e-1071.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15240g PE=4 SV=1[more]
V4TGD6_9ROSI4.6e-1062.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023227mg PE=4 SV=1[more]
W1PKB8_AMBTC1.8e-0966.00Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00018p00046710 PE=4 SV=... [more]
A0A0K9QXW6_SPIOL5.1e-0971.11Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133760 PE=4 SV=1[more]
BLAST of ClCG01G001300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33055.17.0e-1050.91 unknown protein[more]
BLAST of ClCG01G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074192|ref|XP_008437471.1|2.5e-1788.89PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo][more]
gi|778699144|ref|XP_011654666.1|2.1e-1685.19PREDICTED: uncharacterized protein LOC105435431 [Cucumis sativus][more]
gi|658050022|ref|XP_008360721.1|2.3e-1075.56PREDICTED: uncharacterized protein LOC103424417 [Malus domestica][more]
gi|224115468|ref|XP_002317041.1|6.6e-1071.11hypothetical protein POPTR_0011s15240g [Populus trichocarpa][more]
gi|743920596|ref|XP_011004349.1|6.6e-1071.11PREDICTED: uncharacterized protein LOC105110868 [Populus euphratica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G001300.1ClCG01G001300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G001300Csa5G146820Cucumber (Chinese Long) v2cuwcgB364
ClCG01G001300Cla004976Watermelon (97103) v1wcgwmB142
ClCG01G001300Cla97C01G001330Watermelon (97103) v2wcgwmbB089
ClCG01G001300Cucsa.193310Cucumber (Gy14) v1cgywcgB351
ClCG01G001300CmaCh15G013380Cucurbita maxima (Rimu)cmawcgB259
ClCG01G001300CmoCh15G013990Cucurbita moschata (Rifu)cmowcgB247
ClCG01G001300Cp4.1LG00g00890Cucurbita pepo (Zucchini)cpewcgB009
ClCG01G001300Carg21327Silver-seed gourdcarwcgB0352
ClCG01G001300CsaV3_5G001430Cucumber (Chinese Long) v3cucwcgB385
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G001300Silver-seed gourdcarwcgB0686
ClCG01G001300Cucumber (Chinese Long) v3cucwcgB301
ClCG01G001300Watermelon (97103) v2wcgwmbB118
ClCG01G001300Wax gourdwcgwgoB192
ClCG01G001300Watermelon (Charleston Gray)wcgwcgB109
ClCG01G001300Cucumber (Gy14) v1cgywcgB148
ClCG01G001300Cucurbita maxima (Rimu)cmawcgB522
ClCG01G001300Cucurbita moschata (Rifu)cmowcgB521
ClCG01G001300Wild cucumber (PI 183967)cpiwcgB302
ClCG01G001300Wild cucumber (PI 183967)cpiwcgB379
ClCG01G001300Cucumber (Chinese Long) v2cuwcgB291
ClCG01G001300Melon (DHL92) v3.5.1mewcgB018
ClCG01G001300Melon (DHL92) v3.5.1mewcgB468
ClCG01G001300Cucurbita pepo (Zucchini)cpewcgB203
ClCG01G001300Cucurbita pepo (Zucchini)cpewcgB636
ClCG01G001300Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G001300Cucumber (Gy14) v2cgybwcgB268
ClCG01G001300Cucumber (Gy14) v2cgybwcgB332
ClCG01G001300Melon (DHL92) v3.6.1medwcgB016
ClCG01G001300Melon (DHL92) v3.6.1medwcgB460