CmoCh15G011610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G011610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cysteine/Histidine-rich C1 domain family protein, putative
Location	Cmo_Chr15 : 8097174 .. 8097761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCCCCTCATCCATTTCTCCTCCCGCCCTCTCGAAACGAGCACGGCCACACCGAGTTCGAGAATTTCCATCCCATCCACTCGCTCGTCCGCACCCGACCTTCTATAGCTGATTTAGAAGACAAAACTCCGCCATCAAACCAGAGTTCCAGCTCAAACACCCACAACAGTACAAAGAGCAACAACCAACAAGAACGAAACGAAGAAGGGGTTTCGTGTTGTGCATGTCACAAGCCATTGACACCAATAGGTGTCGAAAGCACAACTCTTTGTTACGTATGCAACAAATTGCATTCTACGTACTTTTGTGGACCGTGTTCAAATGGATGGATCAATTTCTTTGATAGAAGATGCTCGGAGTTGCCAAAGGAGATTCATTATCCCTATCATCGTCATCGTCTCACCATGAGCATTAGAAAGAACTCTAATTGCTGTGTTTGTGGGAAGAGGTGTGGAGCTTTCAATTATGGCTGCGATGGCTGCAGCTTCATTGTTGATATCAAATGTGTTTTGAAAGAGAAAAAGAAATATGATGGCCCTATTACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

mRNA sequence

ATGGATCCCCCTCATCCATTTCTCCTCCCGCCCTCTCGAAACGAGCACGGCCACACCGAGTTCGAGAATTTCCATCCCATCCACTCGCTCGTCCGCACCCGACCTTCTATAGCTGATTTAGAAGACAAAACTCCGCCATCAAACCAGAGTTCCAGCTCAAACACCCACAACAGTACAAAGAGCAACAACCAACAAGAACGAAACGAAGAAGGGGTTTCGTGTTGTGCATGTCACAAGCCATTGACACCAATAGGTGTCGAAAGCACAACTCTTTGTTACGTATGCAACAAATTGCATTCTACGTACTTTTGTGGACCGTGTTCAAATGGATGGATCAATTTCTTTGATAGAAGATGCTCGGAGTTGCCAAAGGAGATTCATTATCCCTATCATCGTCATCGTCTCACCATGAGCATTAGAAAGAACTCTAATTGCTGTGTTTGTGGGAAGAGGTGTGGAGCTTTCAATTATGGCTGCGATGGCTGCAGCTTCATTGTTGATATCAAATGTGTTTTGAAAGAGAAAAAGAAATATGATGGCCCTATTACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

Coding sequence (CDS)

ATGGATCCCCCTCATCCATTTCTCCTCCCGCCCTCTCGAAACGAGCACGGCCACACCGAGTTCGAGAATTTCCATCCCATCCACTCGCTCGTCCGCACCCGACCTTCTATAGCTGATTTAGAAGACAAAACTCCGCCATCAAACCAGAGTTCCAGCTCAAACACCCACAACAGTACAAAGAGCAACAACCAACAAGAACGAAACGAAGAAGGGGTTTCGTGTTGTGCATGTCACAAGCCATTGACACCAATAGGTGTCGAAAGCACAACTCTTTGTTACGTATGCAACAAATTGCATTCTACGTACTTTTGTGGACCGTGTTCAAATGGATGGATCAATTTCTTTGATAGAAGATGCTCGGAGTTGCCAAAGGAGATTCATTATCCCTATCATCGTCATCGTCTCACCATGAGCATTAGAAAGAACTCTAATTGCTGTGTTTGTGGGAAGAGGTGTGGAGCTTTCAATTATGGCTGCGATGGCTGCAGCTTCATTGTTGATATCAAATGTGTTTTGAAAGAGAAAAAGAAATATGATGGCCCTATTACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

Homology

[Close]

BLAST of CmoCh15G011610 vs. TrEMBL
Match: A0A067EXR0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045770mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 64  QQERNEEGVSCCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELP 123
           + ERN +G+ C AC + +       T   Y C+             G   +  + C+ELP
Sbjct: 460 ENERNNDGIICLACEENI------GTNPIYGCD-------------GCKFYLHKSCAELP 519

Query: 124 KEIHYPYHRHRLTM---SIRKNSNCCVCGKRCGAFNYGCDGCSFIVDIKCVL 173
           KE  +P+HRH LT+   S RK+ +C  CGK    F+Y C GCSF +D+ C L
Sbjct: 520 KEKQHPFHRHPLTLLDHSSRKHHHCNACGKHYKGFSYCCKGCSFNLDLDCSL 552

[Close]

BLAST of CmoCh15G011610 vs. TrEMBL
Match: V4SVV6_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027334mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 64  QQERNEEGVSCCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELP 123
           + ERN +G+ C AC + +       T   Y C+             G   +  + C+ELP
Sbjct: 89  ENERNNDGIICLACEENI------GTNPIYGCD-------------GCKFYLHKSCAELP 148

Query: 124 KEIHYPYHRHRLTM---SIRKNSNCCVCGKRCGAFNYGCDGCSFIVDIKCVL 173
           KE  +P+HRH LT+   S RK+ +C  CGK    F+Y C GCSF +D+ C L
Sbjct: 149 KEKQHPFHRHPLTLLDHSSRKHHHCNACGKHYKGFSYCCKGCSFNLDLDCSL 181

[Close]

BLAST of CmoCh15G011610 vs. TrEMBL
Match: A0A068UP24_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030649001 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 38/110 (34.55%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 90  TLCYVCNK---LHSTYFCGPCSNGWINFFDRRCSELPKEIHYPYH-RHRLTMSIRKNSN- 149
           ++CY C        TY C  CS     F  RRC+E+PK+I +  H +HRLT+ + K  N 
Sbjct: 29  SICYGCGAPVLSEPTYSCKECSI----FLHRRCAEVPKDISHAMHPQHRLTL-LEKPPNK 88

Query: 150 -----CCVCGKRCGAFNYGCDGCSFIVDIKCVLKEKKKYDGPITSVRKFM 190
                C  CG+  G F Y C+ C+F +D+ C  +++K    P     KF+
Sbjct: 89  EGICDCKGCGQSWGHFTYHCNTCNFNLDVSCATEDRKLKHPPHAHTLKFV 133

[Close]

BLAST of CmoCh15G011610 vs. TAIR10
Match: AT5G22355.1 (AT5G22355.1 Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07
Identity = 30/84 (35.71%), Postives = 42/84 (50.00%), Query Frame = 1


Query: 92  CYVCNKLHSTYFCGPCSNGWINFFDRRCSELPKEI----HYPYHRHRLTMSIRKNSNCCV 151
           C +   ++  Y C   S+  + FF + C+E P EI     +P H  +L  S+R    C +
Sbjct: 29  CNIKGPIYGGYRCNEPSSTSL-FFHKECAEAPPEIINHPSHPQHTLKLHNSLRNPCKCNL 88

Query: 152 CGKRCGAFNYGCDG-CSFIVDIKC 171
           CGK   AF Y C   C FIVD+ C
Sbjct: 89  CGKTFFAFGYRCSSKCDFIVDLTC 111

[Close]

BLAST of CmoCh15G011610 vs. TAIR10
Match: AT5G37620.1 (AT5G37620.1 Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 43/125 (34.40%), Postives = 52/125 (41.60%), Query Frame = 1


Query: 74  CCACHKPLTPIGVESTTL---------------CYVCNKL--HSTYFCGPCSNGWINFF- 133
           C AC K   P+GVES T                C  C  L   S YFC  C     NF  
Sbjct: 230 CRACMKNPPPVGVESPTTHEHQLHLVPRRIHFTCNACGTLGEQSPYFCLQC-----NFMI 289

Query: 134 DRRCSELPKEIHYPYHRHRL--TMSIRKNSNCC-VCGKRCGAF--NYGCDGC-SFIVDIK 175
            R+C +LP+ I+   H HR+  T  IR     C VC K    F   Y C  C SF +  +
Sbjct: 290 HRQCIDLPRVININRHDHRISYTRRIRHGKGICKVCRKMVDGFYGGYICVKCLSFAIHAR 349

[Close]

BLAST of CmoCh15G011610 vs. NCBI nr
Match: gi|641841029|gb|KDO59944.1| (hypothetical protein CISIN_1g045770mg [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 64  QQERNEEGVSCCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELP 123
           + ERN +G+ C AC + +       T   Y C+             G   +  + C+ELP
Sbjct: 460 ENERNNDGIICLACEENI------GTNPIYGCD-------------GCKFYLHKSCAELP 519

Query: 124 KEIHYPYHRHRLTM---SIRKNSNCCVCGKRCGAFNYGCDGCSFIVDIKCVL 173
           KE  +P+HRH LT+   S RK+ +C  CGK    F+Y C GCSF +D+ C L
Sbjct: 520 KEKQHPFHRHPLTLLDHSSRKHHHCNACGKHYKGFSYCCKGCSFNLDLDCSL 552

[Close]

BLAST of CmoCh15G011610 vs. NCBI nr
Match: gi|567870869|ref|XP_006428056.1| (hypothetical protein CICLE_v10027334mg, partial [Citrus clementina])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 64  QQERNEEGVSCCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELP 123
           + ERN +G+ C AC + +       T   Y C+             G   +  + C+ELP
Sbjct: 89  ENERNNDGIICLACEENI------GTNPIYGCD-------------GCKFYLHKSCAELP 148

Query: 124 KEIHYPYHRHRLTM---SIRKNSNCCVCGKRCGAFNYGCDGCSFIVDIKCVL 173
           KE  +P+HRH LT+   S RK+ +C  CGK    F+Y C GCSF +D+ C L
Sbjct: 149 KEKQHPFHRHPLTLLDHSSRKHHHCNACGKHYKGFSYCCKGCSFNLDLDCSL 181

[Close]

BLAST of CmoCh15G011610 vs. NCBI nr
Match: gi|661886140|emb|CDP10062.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 38/110 (34.55%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 90  TLCYVCNK---LHSTYFCGPCSNGWINFFDRRCSELPKEIHYPYH-RHRLTMSIRKNSN- 149
           ++CY C        TY C  CS     F  RRC+E+PK+I +  H +HRLT+ + K  N 
Sbjct: 29  SICYGCGAPVLSEPTYSCKECSI----FLHRRCAEVPKDISHAMHPQHRLTL-LEKPPNK 88

Query: 150 -----CCVCGKRCGAFNYGCDGCSFIVDIKCVLKEKKKYDGPITSVRKFM 190
                C  CG+  G F Y C+ C+F +D+ C  +++K    P     KF+
Sbjct: 89  EGICDCKGCGQSWGHFTYHCNTCNFNLDVSCATEDRKLKHPPHAHTLKFV 133

[Close]

BLAST of CmoCh15G011610 vs. NCBI nr
Match: gi|764616636|ref|XP_011468061.1| (PREDICTED: uncharacterized protein LOC105352497 [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 64  QQERNEEGVSCCACHKPLTPIGVESTTLCYVCNKL--HSTYFCGPCSNGWINFFDRRCSE 123
           +++++E+G          T I V S  +C  C  L    +Y C  CS  +I    + C+E
Sbjct: 248 EEQKHEDGA---------TTITVASPLICSACGDLVLGPSYRCNQCSKLFI--LHKSCAE 307

Query: 124 LPKEIHYPYHR-HRLTMSIRKNSNCCVCGK-RCGAFNYGCDGCSFIVDIKC 171
           LP+E+H+P HR H L +   +  +C +C K   G+F+Y C  C F +D++C
Sbjct: 308 LPREMHHPIHRKHPLVLLADRCYSCDICRKSHSGSFSYKCKPCDFDLDLRC 347

The following BLAST results are available for this feature:

BLAST of CmoCh15G011610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G011610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EXR0_CITSI	1.2e-09	35.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045770mg PE=4 SV=1	[more]
V4SVV6_9ROSI	1.2e-09	35.71	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027334mg PE=...	[more]
A0A068UP24_COFCA	2.4e-07	34.55	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030649001 PE=4 SV=1	[more]

BLAST of CmoCh15G011610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22355.1	2.8e-07	35.71	Cysteine/Histidine-rich C1 domain family protein	[more]
AT5G37620.1	2.4e-06	34.40	Cysteine/Histidine-rich C1 domain family protein	[more]

BLAST of CmoCh15G011610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641841029\|gb\|KDO59944.1\|	1.7e-09	35.71	hypothetical protein CISIN_1g045770mg [Citrus sinensis]	[more]
gi\|567870869\|ref\|XP_006428056.1\|	1.7e-09	35.71	hypothetical protein CICLE_v10027334mg, partial [Citrus clementina]	[more]
gi\|661886140\|emb\|CDP10062.1\|	3.5e-07	34.55	unnamed protein product [Coffea canephora]	[more]
gi\|764616636\|ref\|XP_011468061.1\|	7.8e-07	32.43	PREDICTED: uncharacterized protein LOC105352497 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004146	DC1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G011610.1	CmoCh15G011610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004146	DC1	PFAM	PF03107	C1_2	coord: 129..171 score: 1.
None	No IPR available	unknown	SSF57889	Cysteine-rich domain	coord: 99..173 score: 3.03

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G011610	CmaCh15G011030	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G011610	Cla003655	Watermelon (97103) v1	cmowmB265
CmoCh15G011610	ClCG01G004330	Watermelon (Charleston Gray)	cmowcgB247
CmoCh15G011610	MELO3C033996.2	Melon (DHL92) v3.6.1	cmomedB270
CmoCh15G011610	Cla97C01G004500	Watermelon (97103) v2	cmowmbB270
CmoCh15G011610	Bhi12G000471	Wax gourd	cmowgoB0369

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G011610	Wild cucumber (PI 183967)	cmocpiB275
CmoCh15G011610	Wild cucumber (PI 183967)	cmocpiB295
CmoCh15G011610	Cucumber (Chinese Long) v2	cmocuB268
CmoCh15G011610	Cucumber (Chinese Long) v2	cmocuB286
CmoCh15G011610	Melon (DHL92) v3.5.1	cmomeB238
CmoCh15G011610	Melon (DHL92) v3.5.1	cmomeB270
CmoCh15G011610	Watermelon (Charleston Gray)	cmowcgB235
CmoCh15G011610	Watermelon (97103) v1	cmowmB245
CmoCh15G011610	Cucurbita pepo (Zucchini)	cmocpeB294
CmoCh15G011610	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G011610	Bottle gourd (USVL1VR-Ls)	cmolsiB255
CmoCh15G011610	Bottle gourd (USVL1VR-Ls)	cmolsiB279
CmoCh15G011610	Cucumber (Gy14) v2	cgybcmoB295
CmoCh15G011610	Cucumber (Gy14) v2	cgybcmoB583
CmoCh15G011610	Silver-seed gourd	carcmoB0735
CmoCh15G011610	Cucumber (Chinese Long) v3	cmocucB0347
CmoCh15G011610	Watermelon (97103) v2	cmowmbB272
CmoCh15G011610	Wax gourd	cmowgoB0363
CmoCh15G011610	Cucumber (Gy14) v1	cgycmoB0343
CmoCh15G011610	Cucumber (Gy14) v1	cgycmoB0884