Cla97C01G004500 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G004500
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cysteine/Histidine-rich C1 domain family protein
Location	Cla97Chr01 : 4346832 .. 4347434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCCCCTCACCATTTTCTCCTCCCACCTTCTCAAATCCACCATGGCTACATCGAGCTCGAGAATCTCCACCCCATCTACTCATTTGTTCGCTCCCGACCTTCTATAGCTGATTTAGAGGATGAAACTCTATCGTCATACCAGAGCGCTAGCTCCAGCCATGATGGTACAAGGTCGAACAACAACCAACAAGACTGCAAACGAGAACGAGAACGAGAAAGGGTTTTATGTTGTGCATGTCACAAGCCATTGACACTCATTGGAGTACCAAGCACAACTCTTTGTTACATATGCAACAAATTTCCTTCTACTTACTTTTGTGGGCCATGTTCAAATGGATGGATCAACTTCTTTGATAAAAGGTGTTCAGAATTGCCAAAGGAGATTCATTATCCCTATCATCCTCATCCTCTCACAATGAGAATTAGAAAGAACTCTAATTGTTGTGTTTGTGGCAAAAGTTGTGGAGATTTCAATTATGGTTGTGATAATGGTTGCAACTTCATTGTAGATATCAAATGTCTTTTGAAAGAGAAGAAGAAATTTGATGGCCCTATAACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

mRNA sequence

ATGGTTCCCCCTCACCATTTTCTCCTCCCACCTTCTCAAATCCACCATGGCTACATCGAGCTCGAGAATCTCCACCCCATCTACTCATTTGTTCGCTCCCGACCTTCTATAGCTGATTTAGAGGATGAAACTCTATCGTCATACCAGAGCGCTAGCTCCAGCCATGATGGTACAAGGTCGAACAACAACCAACAAGACTGCAAACGAGAACGAGAACGAGAAAGGGTTTTATGTTGTGCATGTCACAAGCCATTGACACTCATTGGAGTACCAAGCACAACTCTTTGTTACATATGCAACAAATTTCCTTCTACTTACTTTTGTGGGCCATGTTCAAATGGATGGATCAACTTCTTTGATAAAAGGTGTTCAGAATTGCCAAAGGAGATTCATTATCCCTATCATCCTCATCCTCTCACAATGAGAATTAGAAAGAACTCTAATTGTTGTGTTTGTGGCAAAAGTTGTGGAGATTTCAATTATGGTTGTGATAATGGTTGCAACTTCATTGTAGATATCAAATGTCTTTTGAAAGAGAAGAAGAAATTTGATGGCCCTATAACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

Coding sequence (CDS)

ATGGTTCCCCCTCACCATTTTCTCCTCCCACCTTCTCAAATCCACCATGGCTACATCGAGCTCGAGAATCTCCACCCCATCTACTCATTTGTTCGCTCCCGACCTTCTATAGCTGATTTAGAGGATGAAACTCTATCGTCATACCAGAGCGCTAGCTCCAGCCATGATGGTACAAGGTCGAACAACAACCAACAAGACTGCAAACGAGAACGAGAACGAGAAAGGGTTTTATGTTGTGCATGTCACAAGCCATTGACACTCATTGGAGTACCAAGCACAACTCTTTGTTACATATGCAACAAATTTCCTTCTACTTACTTTTGTGGGCCATGTTCAAATGGATGGATCAACTTCTTTGATAAAAGGTGTTCAGAATTGCCAAAGGAGATTCATTATCCCTATCATCCTCATCCTCTCACAATGAGAATTAGAAAGAACTCTAATTGTTGTGTTTGTGGCAAAAGTTGTGGAGATTTCAATTATGGTTGTGATAATGGTTGCAACTTCATTGTAGATATCAAATGTCTTTTGAAAGAGAAGAAGAAATTTGATGGCCCTATAACAAGTGTGAGAAAGTTTATGGGTTTGGTCTATGATTTGTAA

Protein sequence

MVPPHHFLLPPSQIHHGYIELENLHPIYSFVRSRPSIADLEDETLSSYQSASSSHDGTRSNNNQQDCKRERERERVLCCACHKPLTLIGVPSTTLCYICNKFPSTYFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTMRIRKNSNCCVCGKSCGDFNYGCDNGCNFIVDIKCLLKEKKKFDGPITSVRKFMGLVYDL

Homology

[Close]

BLAST of Cla97C01G004500 vs. NCBI nr
Match: XP_021655123.1 (uncharacterized protein LOC110646097 [Hevea brasiliensis])

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 84  PLTLIGVPSTTLCYICNKFPS--TYFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTM 143
           PL L    +  +C  C +  S  TY C  C    I F  K C++LPK+I + +HP PL +
Sbjct: 10  PLKLYEKANEEICMGCREPISGQTYGCSLC----IYFLHKSCTQLPKQIEHFFHPCPLLL 69

Query: 144 RIRKNSNCCVCGKSCGDFNYGCDNGCNFIVDIKCLLKEKKKFDGPITSVRKF 194
           RI   S C  C +    F Y C+  C F +D+KC      K DG   +++ F
Sbjct: 70  RIAPVSRCNACYEETSGFIYSCE-PCEFNMDVKCSQLPAIKSDGQEKNIQHF 116

[Close]

BLAST of Cla97C01G004500 vs. NCBI nr
Match: XP_010538060.1 (PREDICTED: uncharacterized protein LOC104812545 [Tarenaya hassleriana])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 121 KRCSELPKEIHYPYHPHPLTMRIRKNSN--------CCVCGKSCGDFNYGC-DNGCNFIV 180
           +RC+ LP+++H+P HPHP T++I    +        C +C +SC  F Y C D  C+F +
Sbjct: 351 ERCANLPRKLHHPLHPHPFTLQIDNIGDWFGTGCFMCNICQRSCSGFMYQCPDEDCDFKL 410

Query: 181 DIKCL-LKEKKKFDG 186
           D++C  + E   FDG
Sbjct: 411 DVRCASISEPFSFDG 425

[Close]

BLAST of Cla97C01G004500 vs. NCBI nr
Match: CDP10062.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 94  TLCYICNK---FPSTYFCGPCSNGWINFFDKRCSELPKEIHYPYHP-HPLTMRIRKNSN- 153
           ++CY C        TY C  CS     F  +RC+E+PK+I +  HP H LT+ + K  N 
Sbjct: 29  SICYGCGAPVLSEPTYSCKECS----IFLHRRCAEVPKDISHAMHPQHRLTL-LEKPPNK 88

Query: 154 -----CCVCGKSCGDFNYGCDNGCNFIVDIKCLLKEKKKFDGPITSVRKFM 195
                C  CG+S G F Y C N CNF +D+ C  +++K    P     KF+
Sbjct: 89  EGICDCKGCGQSWGHFTYHC-NTCNFNLDVSCATEDRKLKHPPHAHTLKFV 133

[Close]

BLAST of Cla97C01G004500 vs. NCBI nr
Match: ESR41296.1 (hypothetical protein CICLE_v10027334mg, partial [Citrus clementina])

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-06
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 95  LCYICNKFPST---YFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTM---RIRKNSN 154
           +C  C +   T   Y C  C      +  K C+ELPKE  +P+H HPLT+     RK+ +
Sbjct: 98  ICLACEENIGTNPIYGCDGCK----FYLHKSCAELPKEKQHPFHRHPLTLLDHSSRKHHH 157

Query: 155 CCVCGKSCGDFNYGCDNGCNFIVDIKCLL 178
           C  CGK    F+Y C  GC+F +D+ C L
Sbjct: 158 CNACGKHYKGFSY-CCKGCSFNLDLDCSL 181

[Close]

BLAST of Cla97C01G004500 vs. NCBI nr
Match: KDO59944.1 (hypothetical protein CISIN_1g045770mg [Citrus sinensis])

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-06
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 95  LCYICNKFPST---YFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTM---RIRKNSN 154
           +C  C +   T   Y C  C      +  K C+ELPKE  +P+H HPLT+     RK+ +
Sbjct: 469 ICLACEENIGTNPIYGCDGCK----FYLHKSCAELPKEKQHPFHRHPLTLLDHSSRKHHH 528

Query: 155 CCVCGKSCGDFNYGCDNGCNFIVDIKCLL 178
           C  CGK    F+Y C  GC+F +D+ C L
Sbjct: 529 CNACGKHYKGFSY-CCKGCSFNLDLDCSL 552

[Close]

BLAST of Cla97C01G004500 vs. TrEMBL
Match: tr|A0A2N9EEA5|A0A2N9EEA5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS801 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-07
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 92  STTLCYICNK--FPSTYFCGPCSNGWINFFDKRCSELPKEIHYPYHP-HPLTM--RIRKN 151
           S  LCY C++     +Y C  C      +  K C+ELP+E+H+P+HP HPL +       
Sbjct: 20  SGCLCYGCSEPVLGPSYSCIQCKR---FYHHKSCAELPRELHHPFHPKHPLILGEYYDYK 79

Query: 152 SNCCVCGKSCGDFNYGCDNGCNFIVDIKC---LLKEKKKFDGPITSVRKFMGLVYDL 201
             C VC +    ++YGC + CNF +  +C   L  E +  D P+T + KF+    DL
Sbjct: 80  GKCQVCEEYRLTYSYGCSD-CNFNLHSRCAFPLTMETELHDHPLTCIWKFVKFTCDL 132

[Close]

BLAST of Cla97C01G004500 vs. TrEMBL
Match: tr|A0A068UP24|A0A068UP24_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030649001 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 94  TLCYICNK---FPSTYFCGPCSNGWINFFDKRCSELPKEIHYPYHP-HPLTMRIRKNSN- 153
           ++CY C        TY C  CS     F  +RC+E+PK+I +  HP H LT+ + K  N 
Sbjct: 29  SICYGCGAPVLSEPTYSCKECS----IFLHRRCAEVPKDISHAMHPQHRLTL-LEKPPNK 88

Query: 154 -----CCVCGKSCGDFNYGCDNGCNFIVDIKCLLKEKKKFDGPITSVRKFM 195
                C  CG+S G F Y C N CNF +D+ C  +++K    P     KF+
Sbjct: 89  EGICDCKGCGQSWGHFTYHC-NTCNFNLDVSCATEDRKLKHPPHAHTLKFV 133

[Close]

BLAST of Cla97C01G004500 vs. TrEMBL
Match: tr|V4SVV6|V4SVV6_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027334mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.9e-06
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 95  LCYICNKFPST---YFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTM---RIRKNSN 154
           +C  C +   T   Y C  C      +  K C+ELPKE  +P+H HPLT+     RK+ +
Sbjct: 98  ICLACEENIGTNPIYGCDGCK----FYLHKSCAELPKEKQHPFHRHPLTLLDHSSRKHHH 157

Query: 155 CCVCGKSCGDFNYGCDNGCNFIVDIKCLL 178
           C  CGK    F+Y C  GC+F +D+ C L
Sbjct: 158 CNACGKHYKGFSY-CCKGCSFNLDLDCSL 181

[Close]

BLAST of Cla97C01G004500 vs. TrEMBL
Match: tr|A0A067EXR0|A0A067EXR0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045770mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.9e-06
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 95  LCYICNKFPST---YFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTM---RIRKNSN 154
           +C  C +   T   Y C  C      +  K C+ELPKE  +P+H HPLT+     RK+ +
Sbjct: 469 ICLACEENIGTNPIYGCDGCK----FYLHKSCAELPKEKQHPFHRHPLTLLDHSSRKHHH 528

Query: 155 CCVCGKSCGDFNYGCDNGCNFIVDIKCLL 178
           C  CGK    F+Y C  GC+F +D+ C L
Sbjct: 529 CNACGKHYKGFSY-CCKGCSFNLDLDCSL 552

[Close]

BLAST of Cla97C01G004500 vs. TrEMBL
Match: tr|A0A2I4GI18|A0A2I4GI18_9ROSI (uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 31/88 (35.23%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 96  CYICNK--FPSTYFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTMRIRKNSN----C 155
           C  C +  FP  Y C  C      F  K C ELP++I +P H HPL +R ++  +    C
Sbjct: 711 CNACMRSIFPPFYICAQCG----FFLHKACVELPRKIRHPLHQHPLILRPKETIHGFYVC 770

Query: 156 CVCGKSCGDFNYGCDNGCNFIVDIKCLL 178
             C + C  F Y C   C F +D++C L
Sbjct: 771 KTCCRLCSGFTYNCKK-CKFDIDVQCSL 793

[Close]

BLAST of Cla97C01G004500 vs. TAIR10
Match: AT1G55430.1 (Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 22/73 (30.14%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 120 DKRCSELPKEIHYPYHPHPLTMRI---------------RKNSNCCVCGKSCGDFNYGC- 176
           D+ C+ LP++I+ P H HPLT+ +               +   NC  C +    F+Y C 
Sbjct: 406 DEACASLPRKIYNPLHKHPLTLHVVPTIDTYTDPNMPITKVIFNCIGCLRYGCGFHYRCH 465

[Close]

BLAST of Cla97C01G004500 vs. TAIR10
Match: AT2G02610.1 (Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 21/76 (27.63%), Postives = 33/76 (43.42%), Query Frame = 0


Query: 104 STYFCGPCSNGWINFFDKRCSELPKEIHYPYHPHPLTMRIRKNS---NCCVCGKSCGDFN 163
           + Y C  C         + C+  P++  +P HPHPLT+++        C  C +    F 
Sbjct: 379 NVYVCVECD----FILHETCAYAPRKKVHPLHPHPLTLKVDHGDALFQCSACMRKSNGFG 438

Query: 164 YGC-DNGCNFIVDIKC 176
           Y C    C +I+D  C
Sbjct: 439 YDCTSRTCYYILDAVC 450

[Close]

BLAST of Cla97C01G004500 vs. TAIR10
Match: AT2G21840.1 (Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 32/103 (31.07%), Postives = 44/103 (42.72%), Query Frame = 0


Query: 99  CNKFPSTYFCGPCSNGWINFFDKR-CSELPKEIHYPYH-PHPLTMRIRK----NSNCCVC 158
           CN   +     PC     +F     C+EL +   + +H  H LT+           C  C
Sbjct: 412 CNMCGTKIHDNPCKCETCSFQSHDFCAELGRPSKHQFHLNHSLTLLPNTPRWFRRKCESC 471

Query: 159 GKSCGDFNYGCDNGCNFIVDIKCLLKEKKKFDGPITSVRKFMG 196
               G FN  C   CNFI+DI C LK+ KK  G +   +K +G
Sbjct: 472 KDDIGGFNLFC-RICNFIIDINCALKD-KKMHGALQRGQKIIG 512

The following BLAST results are available for this feature:

BLAST of Cla97C01G004500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021655123.1	3.1e-07	34.82	uncharacterized protein LOC110646097 [Hevea brasiliensis]	[more]
XP_010538060.1	1.2e-06	37.33	PREDICTED: uncharacterized protein LOC104812545 [Tarenaya hassleriana]	[more]
CDP10062.1	2.0e-06	36.04	unnamed protein product [Coffea canephora]	[more]
ESR41296.1	5.9e-06	38.20	hypothetical protein CICLE_v10027334mg, partial [Citrus clementina]	[more]
KDO59944.1	5.9e-06	38.20	hypothetical protein CISIN_1g045770mg [Citrus sinensis]	[more]

BLAST of Cla97C01G004500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9EEA5\|A0A2N9EEA5_FAGSY	4.6e-07	34.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS801 PE=4 SV=1	[more]
tr\|A0A068UP24\|A0A068UP24_COFCA	1.3e-06	36.04	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030649001 PE=4 ...	[more]
tr\|V4SVV6\|V4SVV6_9ROSI	3.9e-06	38.20	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027...	[more]
tr\|A0A067EXR0\|A0A067EXR0_CITSI	3.9e-06	38.20	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045770mg PE=4 SV=1	[more]
tr\|A0A2I4GI18\|A0A2I4GI18_9ROSI	6.7e-06	35.23	uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 P...	[more]

BLAST of Cla97C01G004500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G004500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55430.1	5.1e-04	30.14	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G02610.1	5.1e-04	27.63	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G21840.1	5.1e-04	31.07	Cysteine/Histidine-rich C1 domain family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004146	DC1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0035556	intracellular signal transduction
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G004500.1	Cla97C01G004500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004146	DC1	PFAM	PF03107	C1_2	coord: 133..175 e-value: 4.0E-9 score: 36.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..68
None	No IPR available	SUPERFAMILY	SSF57889	Cysteine-rich domain	coord: 104..178

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G004500	Cla003655	Watermelon (97103) v1	wmwmbB245
Cla97C01G004500	ClCG01G004330	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G004500	CmaCh15G011030	Cucurbita maxima (Rimu)	cmawmbB288
Cla97C01G004500	CmoCh15G011610	Cucurbita moschata (Rifu)	cmowmbB270
Cla97C01G004500	MELO3C033996.2	Melon (DHL92) v3.6.1	medwmbB006
Cla97C01G004500	Bhi12G000471	Wax gourd	wgowmbB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G004500	Watermelon (97103) v2	wmbwmbB002
Cla97C01G004500	Silver-seed gourd	carwmbB0569
Cla97C01G004500	Silver-seed gourd	carwmbB0814
Cla97C01G004500	Cucumber (Gy14) v2	cgybwmbB170
Cla97C01G004500	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G004500	Cucumber (Gy14) v1	cgywmbB208
Cla97C01G004500	Cucumber (Gy14) v1	cgywmbB560
Cla97C01G004500	Cucurbita maxima (Rimu)	cmawmbB600
Cla97C01G004500	Cucurbita maxima (Rimu)	cmawmbB836
Cla97C01G004500	Cucurbita moschata (Rifu)	cmowmbB575
Cla97C01G004500	Cucurbita moschata (Rifu)	cmowmbB808
Cla97C01G004500	Wild cucumber (PI 183967)	cpiwmbB180
Cla97C01G004500	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G004500	Cucumber (Chinese Long) v3	cucwmbB178
Cla97C01G004500	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G004500	Cucumber (Chinese Long) v2	cuwmbB177
Cla97C01G004500	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G004500	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G004500	Bottle gourd (USVL1VR-Ls)	lsiwmbB391
Cla97C01G004500	Melon (DHL92) v3.6.1	medwmbB410
Cla97C01G004500	Melon (DHL92) v3.5.1	mewmbB008
Cla97C01G004500	Melon (DHL92) v3.5.1	mewmbB419
Cla97C01G004500	Watermelon (97103) v1	wmwmbB050