CmoCh15G006990 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGeneral transcription factor IIH subunit 3
LocationCmo_Chr15 : 3409054 .. 3409965 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGTTTGTTTGTTGCAGAAACCCGCCACGCCGTCCACTGCTTGAACCCACACGTTGCCATCGTCGATTGCTGCGACCCTCGCCGTTGAGGAAGAACAACGAGATCCGAAGCTTGGCGGCGGAAAGGTAAGTTTCTTCCCTTTTTATTTGTTTATTTATGATGGTGGGTAGAACTGGGCGTCTTTCTCGGTGGCTCAATCTGTAACATTTTTGGGCCTATTTTGCGTCGAAGTCTATTAGAAGTAGAATTGGGCGTCTTCTCTCCGTTGCCAATTCAGAAACAGACATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACGAGGATCAGAGTTCCAGGGGCTTATTCTTTTTTGTGATCTTTTGATTGTGTTGCTGCAGATGATGTTAGCCTGTTAGTGGTTTTACTGGATACAAATCCATTTTTCTGGAGCACATATTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTAATTGATTGATTCTCTCTCTACTTATGGATCATTCTATCAAATTGGTATTTCAGGTAGAAATGTAATGAACACTGGTAATTTTCTGTTTTGGGTATATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGTAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCGAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA

mRNA sequence

AAGGTTTGTTTGTTGCAGAAACCCGCCACGCCGTCCACTGCTTGAACCCACACGTTGCCATCGTCGATTGCTGCGACCCTCGCCGTTGAGGAAGAACAACGAGATCCGAAGCTTGGCGGCGGAAAGTCTATTAGAAGTAGAATTGGGCGTCTTCTCTCCGTTGCCAATTCAGAAACAGACATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTGTTAGTGGTTTTACTGGATACAAATCCATTTTTCTGGAGCACATATTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGTAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCGAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA

Coding sequence (CDS)

ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTGTTAGTGGTTTTACTGGATACAAATCCATTTTTCTGGAGCACATATTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGTAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCGAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA
Homology
[Close]
BLAST of CmoCh15G006990 vs. Swiss-Prot
Match: TFB4_ARATH (RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TFB4 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-33
Identity = 82/136 (60.29%), Postives = 97/136 (71.32%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQ-SIEEDPRGGT 120
            TGY+SC Y+Y+SS  SN    +     MPA+   LL  LEEF+  DE+ S EE      
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 MSSLLSGSLSMALCCI 133
            S LLSGSLSMALC I
Sbjct: 121 PSCLLSGSLSMALCYI 136

[Close]
BLAST of CmoCh15G006990 vs. Swiss-Prot
Match: TFB4_SCHPO (RNA polymerase II transcription factor B subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1 

Query: 11  DDVSLLVVLLDTNPFFWSTYS--LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCK 70
           D  SLLVV+LD NP  W + S  +P SK L+ +  FLN+ L  +  N V V+ +     +
Sbjct: 21  DTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVE 80

Query: 71  YLYNSSSYSNRSLE-DGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSLLSGSLSM 130
           YLY S +   +  E D    A   R    +++ ++   + +       +  +++SG+LS 
Sbjct: 81  YLYPSIAPEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRKTMISGALSR 140

Query: 131 ALCCI 133
           AL  I
Sbjct: 141 ALAYI 145

[Close]
BLAST of CmoCh15G006990 vs. TrEMBL
Match: A0A0A0LMM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-61
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST +LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSI+EDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. TrEMBL
Match: A0A0B0PXZ5_GOSAR (General transcription factor IIH subunit 3 OS=Gossypium arboreum GN=F383_14476 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSL+VVLLDTNPFFWS+ SL FS+FLSHVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLVVVLLDTNPFFWSSSSLSFSQFLSHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+++SSS  NRS E+GRMP +C+ LL  LEEF+I DEQ  +E+P G   SSL
Sbjct: 61  ATGYNSCDYVFDSSSDLNRSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEEPEGKIKSSL 120

Query: 121 LSGSLSMALCCIL 134
            SGSLSMALCCIL
Sbjct: 121 FSGSLSMALCCIL 133

[Close]
BLAST of CmoCh15G006990 vs. TrEMBL
Match: M5XYU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+ SLPFS FLSHVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+Y+SS+ +N+  ++GRMPA C  LL  LEEF+I DEQ I+E  R G  SSL
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. TrEMBL
Match: A0A0D2TUK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G245300 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-44
Identity = 95/132 (71.97%), Postives = 109/132 (82.58%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSL+VVLLDTNPFFWS+ SL FS+FLSHVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLVVVLLDTNPFFWSSSSLSFSQFLSHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+++SSS  NRS E+GRMP +C+ LL  LEEF+I DEQ  +E+P G    SL
Sbjct: 61  ATGYNSCDYVFDSSSDLNRSFENGRMPVMCSSLLQKLEEFLITDEQLSKEEPEGKIKPSL 120

Query: 121 LSGSLSMALCCI 133
            SGSLSMALC I
Sbjct: 121 FSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. TrEMBL
Match: A0A0D2UT04_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G245300 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-44
Identity = 95/132 (71.97%), Postives = 109/132 (82.58%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSL+VVLLDTNPFFWS+ SL FS+FLSHVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLVVVLLDTNPFFWSSSSLSFSQFLSHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+++SSS  NRS E+GRMP +C+ LL  LEEF+I DEQ  +E+P G    SL
Sbjct: 61  ATGYNSCDYVFDSSSDLNRSFENGRMPVMCSSLLQKLEEFLITDEQLSKEEPEGKIKPSL 120

Query: 121 LSGSLSMALCCI 133
            SGSLSMALC I
Sbjct: 121 FSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. TAIR10
Match: AT1G18340.1 (AT1G18340.1 basal transcription factor complex subunit-related)

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-34
Identity = 82/136 (60.29%), Postives = 97/136 (71.32%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           M +  SK Y+DDVSLLV+LLDTNP FWST S+ FS+FLSHVLAFLN++L LNQLN+VVVI
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGR---MPALCTRLLNNLEEFMIGDEQ-SIEEDPRGGT 120
            TGY+SC Y+Y+SS  SN    +     MPA+   LL  LEEF+  DE+ S EE      
Sbjct: 61  ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI 120

Query: 121 MSSLLSGSLSMALCCI 133
            S LLSGSLSMALC I
Sbjct: 121 PSCLLSGSLSMALCYI 136

[Close]
BLAST of CmoCh15G006990 vs. NCBI nr
Match: gi|659082582|ref|XP_008441918.1| (PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.3e-61
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSI+EDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. NCBI nr
Match: gi|449470273|ref|XP_004152842.1| (PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 5.1e-61
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLLVVLLDTNPFFWST +LPFSKFLSHVLAFLNSILVLNQLNEVVVI
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
           GTGYASCKYLYNSSSYSN  LEDGRMPALCTRLL NLEEF+IGDEQSI+EDP+GGTMSSL
Sbjct: 61  GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. NCBI nr
Match: gi|728849891|gb|KHG29334.1| (General transcription factor IIH subunit 3 [Gossypium arboreum])

HSP 1 Score: 192.6 bits (488), Expect = 4.6e-46
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSL+VVLLDTNPFFWS+ SL FS+FLSHVLAFLN+IL LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLVVVLLDTNPFFWSSSSLSFSQFLSHVLAFLNAILTLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+++SSS  NRS E+GRMP +C+ LL  LEEF+I DEQ  +E+P G   SSL
Sbjct: 61  ATGYNSCDYVFDSSSDLNRSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEEPEGKIKSSL 120

Query: 121 LSGSLSMALCCIL 134
            SGSLSMALCCIL
Sbjct: 121 FSGSLSMALCCIL 133

[Close]
BLAST of CmoCh15G006990 vs. NCBI nr
Match: gi|645225617|ref|XP_008219657.1| (PREDICTED: general transcription factor IIH subunit 3 [Prunus mume])

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-44
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+ SLPFS FLSHVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+Y+SS+ +N+  ++GRMPA C  LL  LEEF+I DEQ I+E  R G  SSL
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

[Close]
BLAST of CmoCh15G006990 vs. NCBI nr
Match: gi|596178523|ref|XP_007223251.1| (hypothetical protein PRUPE_ppa009386mg [Prunus persica])

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-44
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1 

Query: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
           MASAPSKLYADDVSLL+VLLDTNPFFWS+ SLPFS FLSHVL FLNSIL+LNQLN+VVVI
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI 60

Query: 61  GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL 120
            TGY SC Y+Y+SS+ +N+  ++GRMPA C  LL  LEEF+I DEQ I+E  R G  SSL
Sbjct: 61  ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSL 120

Query: 121 LSGSLSMALCCI 133
           LSGSLSMALC I
Sbjct: 121 LSGSLSMALCYI 132

The following BLAST results are available for this feature:
BLAST of CmoCh15G006990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB4_ARATH4.5e-3360.29RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TF... [more]
TFB4_SCHPO3.6e-0630.40RNA polymerase II transcription factor B subunit 4 OS=Schizosaccharomyces pombe ... [more]
BLAST of CmoCh15G006990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMM2_CUCSA3.6e-6193.18Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1[more]
A0A0B0PXZ5_GOSAR3.2e-4673.68General transcription factor IIH subunit 3 OS=Gossypium arboreum GN=F383_14476 P... [more]
M5XYU6_PRUPE1.4e-4473.48Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1[more]
A0A0D2TUK6_GOSRA5.2e-4471.97Uncharacterized protein OS=Gossypium raimondii GN=B456_009G245300 PE=4 SV=1[more]
A0A0D2UT04_GOSRA5.2e-4471.97Uncharacterized protein OS=Gossypium raimondii GN=B456_009G245300 PE=4 SV=1[more]
BLAST of CmoCh15G006990 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G18340.12.5e-3460.29 basal transcription factor complex subunit-related[more]
BLAST of CmoCh15G006990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082582|ref|XP_008441918.1|2.3e-6193.94PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucu... [more]
gi|449470273|ref|XP_004152842.1|5.1e-6193.18PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus][more]
gi|728849891|gb|KHG29334.1|4.6e-4673.68General transcription factor IIH subunit 3 [Gossypium arboreum][more]
gi|645225617|ref|XP_008219657.1|2.0e-4473.48PREDICTED: general transcription factor IIH subunit 3 [Prunus mume][more]
gi|596178523|ref|XP_007223251.1|2.0e-4473.48hypothetical protein PRUPE_ppa009386mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/GTF2H3
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006990.1CmoCh15G006990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004600TFIIH subunit Tfb4/p34PANTHERPTHR12831TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATEDcoord: 1..132
score: 2.3
IPR004600TFIIH subunit Tfb4/p34PFAMPF03850Tfb4coord: 13..132
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G006990CmaCh15G006840Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G006990Cla013947Watermelon (97103) v1cmowmB250
CmoCh15G006990ClCG08G005590Watermelon (Charleston Gray)cmowcgB265
CmoCh15G006990Lsi08G004280Bottle gourd (USVL1VR-Ls)cmolsiB282
CmoCh15G006990Cp4.1LG13g04770Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G006990Cla97C08G148370Watermelon (97103) v2cmowmbB302
CmoCh15G006990Bhi04G001527Wax gourdcmowgoB0386
CmoCh15G006990Carg01525Silver-seed gourdcarcmoB1118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G006990Silver-seed gourdcarcmoB0603
CmoCh15G006990Silver-seed gourdcarcmoB0915
CmoCh15G006990Cucumber (Chinese Long) v3cmocucB0333
CmoCh15G006990Watermelon (97103) v2cmowmbB280
CmoCh15G006990Wax gourdcmowgoB0404
CmoCh15G006990Cucurbita moschata (Rifu)cmocmoB008
CmoCh15G006990Cucurbita moschata (Rifu)cmocmoB245
CmoCh15G006990Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G006990Cucurbita maxima (Rimu)cmacmoB037
CmoCh15G006990Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G006990Wild cucumber (PI 183967)cmocpiB284
CmoCh15G006990Cucumber (Chinese Long) v2cmocuB276
CmoCh15G006990Melon (DHL92) v3.5.1cmomeB259
CmoCh15G006990Melon (DHL92) v3.5.1cmomeB273
CmoCh15G006990Watermelon (Charleston Gray)cmowcgB242
CmoCh15G006990Watermelon (97103) v1cmowmB279
CmoCh15G006990Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G006990Cucurbita pepo (Zucchini)cmocpeB298
CmoCh15G006990Bottle gourd (USVL1VR-Ls)cmolsiB271
CmoCh15G006990Cucumber (Gy14) v2cgybcmoB459
CmoCh15G006990Melon (DHL92) v3.6.1cmomedB293
CmoCh15G006990Melon (DHL92) v3.6.1cmomedB307