Carg01525 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACGAGGATCAGAGTTTCAGGGGCTTAATCTTTTTTGTGATCTTTTGATTGTGTTGCTGCAGATGATGTTAGCCTGTTAGTGGTTTTACTGGATACAAATCCATTTTTCTGGAGCACATATTCTCTCCCATTCTCCAAGTTTCTCTCTCATGTAATTGATTGATTCTCTCTCTACTTATGGATCATTCTATCAAATTGGTATTTCAGGTAGAAATGTAATGAACACTGGTAATTTTCTGTTTTGGGTATATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGCAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCAAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGCAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCAAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGGTTCTTCTTCAATTCCTCTCTCCTTTCATATGGATTCTCAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATATGCTTCATGCAAGTATCTATACAACTCGTCTTCTTACTCAAATCGTAGCCTTGAAGATGGCAGAATGCCTGCACTTTGCACTCGTTTATTGAATAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCAATCAAGGAAGATCCCAGAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTTTGTGTTGTATCCTTGTTGATGATTTTTGGTGCTGA MASAPSKLYAGSSSIPLSFHMDSQVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIKEDPRGGTMSSLLSGSLSMALCCILVDDFWC
BLAST of Carg01525 vs. NCBI nr
Match: XP_023550583.1 (RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.4 bits (472), Expect = 5.7e-44 Identity = 105/133 (78.95%), Postives = 108/133 (81.20%), Query Frame = 0
BLAST of Carg01525 vs. NCBI nr
Match: XP_022938728.1 (RNA polymerase II transcription factor B subunit 4 [Cucurbita moschata]) HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43 Identity = 104/133 (78.20%), Postives = 108/133 (81.20%), Query Frame = 0
BLAST of Carg01525 vs. NCBI nr
Match: XP_022993825.1 (RNA polymerase II transcription factor B subunit 4 [Cucurbita maxima]) HSP 1 Score: 183.0 bits (463), Expect = 6.3e-43 Identity = 103/131 (78.63%), Postives = 106/131 (80.92%), Query Frame = 0
BLAST of Carg01525 vs. NCBI nr
Match: XP_008441918.2 (PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo]) HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42 Identity = 101/133 (75.94%), Postives = 106/133 (79.70%), Query Frame = 0
BLAST of Carg01525 vs. NCBI nr
Match: XP_004152842.1 (PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus] >XP_011648981.1 PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus] >KGN61231.1 hypothetical protein Csa_2G072450 [Cucumis sativus]) HSP 1 Score: 179.1 bits (453), Expect = 9.1e-42 Identity = 100/133 (75.19%), Postives = 106/133 (79.70%), Query Frame = 0
BLAST of Carg01525 vs. TAIR10
Match: AT1G18340.1 (basal transcription factor complex subunit-related) HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18 Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 0
BLAST of Carg01525 vs. Swiss-Prot
Match: sp|Q8LF41|TFB4_ARATH (General transcription and DNA repair factor IIH subunit TFB4 OS=Arabidopsis thaliana OX=3702 GN=TFB4 PE=2 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 3.1e-17 Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 0
BLAST of Carg01525 vs. TrEMBL
Match: tr|A0A1S3B4H7|A0A1S3B4H7_CUCME (LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103485913 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 2.7e-42 Identity = 101/133 (75.94%), Postives = 106/133 (79.70%), Query Frame = 0
BLAST of Carg01525 vs. TrEMBL
Match: tr|A0A0A0LMM2|A0A0A0LMM2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072450 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 6.1e-42 Identity = 100/133 (75.19%), Postives = 106/133 (79.70%), Query Frame = 0
BLAST of Carg01525 vs. TrEMBL
Match: tr|A0A0B0PXZ5|A0A0B0PXZ5_GOSAR (General transcription factor IIH subunit 3 OS=Gossypium arboreum OX=29729 GN=F383_14476 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29 Identity = 80/133 (60.15%), Postives = 90/133 (67.67%), Query Frame = 0
BLAST of Carg01525 vs. TrEMBL
Match: tr|A0A2P5VN08|A0A2P5VN08_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA40491 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29 Identity = 80/133 (60.15%), Postives = 90/133 (67.67%), Query Frame = 0
BLAST of Carg01525 vs. TrEMBL
Match: tr|A0A2P5Q8A4|A0A2P5Q8A4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD32338 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 2.9e-28 Identity = 79/133 (59.40%), Postives = 89/133 (66.92%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |