CmoCh15G006930 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Light-harvesting complex I chlorophyll A/B-binding protein
Location	Cmo_Chr15 : 3384093 .. 3385642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACCAATCCACCATCACAAAAAACTAAACGACGACGTGTCACTCTATGCGCCGATCGTCAAACTCTCCCCACCAAATCCACAAGCACATCCCATTTCACCATACACTCAAATTCCCTCTGATTTCTCGAAACCTTTCTTCTTAAAAGCCTATCCAAATTACTCACCCATTTGCTTAAGCTTTTTAAATCACAGGCTTCCCTGCATTAATCTCACTCGAATACCTTATAGCATTTTCATTTCGGTTCATTTCGGTTCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGATAGATTTCGCTTCTATTTTCACTCCAACGCTTAGACCTAACGCCCAAGTTACTCGCCTCCTTTTCAATCCTTCGCCTCCGCATTCCGTTTCCTTGCCGGCGCGTGGATTTACGACTCTTGCAGCTTTTAAATCCAGAACCAAAGTGCCGCCGAAGAAGGTAATTTTGATTTTGATTCTTCTTAGAGAGAGGAATTGATGGAATCTGAGAGTTCGCTTGATTCTTGATTTGATGTTAGGTTTCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGTGAGTTCCTTCGAATTTATGGATCTACGTTTATCAAATACCTAAGTAAGGCAACATTATTATAAATCTAATTGGATTTTGATATGTATGATGGTGTAAAATTTGCAGGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGATTGGAACGCGCCGTCATCCCTCCCGGGAAGAGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTAAATTACAGTACTGTACAAATCACGTACGCCATTGTTCAGTTAAATCAAATCTTACATGAAATTGACGACGACTCTGTTTTGTTGAAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTATTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTCTGAATCCTGGAACTGGAAAGTTCGTCACCGACGAGGAAGATGATGATTGAACGGATCGATTCTGCTTTAATTTTCTTTGTACATGAACTTAGCAAATCCGCGAATTTCTCTTTAGGCTTGTGTTATTGTAACATGTGTATTCTGCTTGAGCACCTAAAACAACGAAATCCGAGCAACAGACTTTGACTGGTAAATTGTTAAAAAATTATTATAAATATAAAACTTTATGGGAAATAATTATTCGAC

mRNA sequence

CCCACCAATCCACCATCACAAAAAACTAAACGACGACGTGTCACTCTATGCGCCGATCGTCAAACTCTCCCCACCAAATCCACAAGCACATCCCATTTCACCATACACTCAAATTCCCTCTGATTTCTCGAAACCTTTCTTCTTAAAAGCCTATCCAAATTACTCACCCATTTGCTTAAGCTTTTTAAATCACAGGCTTCCCTGCATTAATCTCACTCGAATACCTTATAGCATTTTCATTTCGGTTCATTTCGGTTCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGATAGATTTCGCTTCTATTTTCACTCCAACGCTTAGACCTAACGCCCAAGTTACTCGCCTCCTTTTCAATCCTTCGCCTCCGCATTCCGTTTCCTTGCCGGCGCGTGGATTTACGACTCTTGCAGCTTTTAAATCCAGAACCAAAGTGCCGCCGAAGAAGGTTTCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGATTGGAACGCGCCGTCATCCCTCCCGGGAAGAGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTATTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTCTGAATCCTGGAACTGGAAAGTTCGTCACCGACGAGGAAGATGATGATTGAACGGATCGATTCTGCTTTAATTTTCTTTGTACATGAACTTAGCAAATCCGCGAATTTCTCTTTAGGCTTGTGTTATTGTAACATGTGTATTCTGCTTGAGCACCTAAAACAACGAAATCCGAGCAACAGACTTTGACTGGTAAATTGTTAAAAAATTATTATAAATATAAAACTTTATGGGAAATAATTATTCGAC

Coding sequence (CDS)

ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGATAGATTTCGCTTCTATTTTCACTCCAACGCTTAGACCTAACGCCCAAGTTACTCGCCTCCTTTTCAATCCTTCGCCTCCGCATTCCGTTTCCTTGCCGGCGCGTGGATTTACGACTCTTGCAGCTTTTAAATCCAGAACCAAAGTGCCGCCGAAGAAGGTTTCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGATTGGAACGCGCCGTCATCCCTCCCGGGAAGAGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTATTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTCTGAATCCTGGAACTGGAAAGTTCGTCACCGACGAGGAAGATGATGATTGA

Homology

[Close]

BLAST of CmoCh15G006930 vs. Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.9e-104
Identity = 207/279 (74.19%), Postives = 224/279 (80.29%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGF-------T 62
           AQTMLLT+ A    K+D  S  +   R   +    LF PS P   S     F       T
Sbjct: 2   AQTMLLTANA----KVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTST 61

Query: 63  TLAAFKSRTKVPPKKVSKPK----VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 122
           T+A FKS+ K PPKKV+ PK    VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG
Sbjct: 62  TVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 121

Query: 123 EGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLER 182
           E ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP  A GLE+
Sbjct: 122 EAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEK 181

Query: 183 AVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 242
           AVIPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN 
Sbjct: 182 AVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNF 241

Query: 243 ETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 ETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CmoCh15G006930 vs. Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 5.6e-104
Identity = 203/277 (73.29%), Postives = 228/277 (82.31%), Query Frame = 1


Query: 1   MAAQTMLLTSGACAGHKIDFA-----SIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFT 60
           MA   +L+  G    + ID        +    ++P +  + L F+P P  S S  +  F 
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSS-SSTVFK 60

Query: 61  TLAAFKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           TLA FKS+ K P KKV KPK  VEDG+FGTSGGIGFTK+NELFVGRVAMIGFAASLLGEG
Sbjct: 61  TLALFKSKAKAP-KKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVI 180
           ITGKGIL+QLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRG+F+D+P T GLE+AVI
Sbjct: 121 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP-TTGLEKAVI 180

Query: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 271
           VPINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E++D
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEED 274

[Close]

BLAST of CmoCh15G006930 vs. Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=2 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 5.6e-104
Identity = 206/271 (76.01%), Postives = 226/271 (83.39%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPAR--GFTTLAAF 62
           AQTMLLTSG  AGH   F    +P  +P  +V  L  + + P  V+LP+R   F  LA F
Sbjct: 2   AQTMLLTSGVTAGH---FLRNKSPLAQP--KVHHLFLSGNSP--VALPSRRQSFVPLALF 61

Query: 63  KSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKG 122
           K +TK  PKKV KPK  VEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +TGKG
Sbjct: 62  KPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKG 121

Query: 123 ILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKS 182
           ILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T GLE+AVIPPGK+
Sbjct: 122 ILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GLEKAVIPPGKN 181

Query: 183 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 242
            RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +
Sbjct: 182 VRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQD 241

Query: 243 IEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 IEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CmoCh15G006930 vs. Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.6e-103
Identity = 206/279 (73.84%), Postives = 225/279 (80.65%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPP-----HSVSLPARGFT-- 62
           AQTMLLT+ A    K+D  S  +   R   +    LF PS P      S +  +  FT  
Sbjct: 2   AQTMLLTANA----KVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTST 61

Query: 63  TLAAFKSRTKVPPKKVSKPK----VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 122
           T+A FKS+ K PPKKV+ PK    VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG
Sbjct: 62  TVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 121

Query: 123 EGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPET-AGLER 182
           E ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP    GLE+
Sbjct: 122 EAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEK 181

Query: 183 AVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 242
           AVIPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN 
Sbjct: 182 AVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNF 241

Query: 243 ETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 ETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CmoCh15G006930 vs. Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 8.3e-100
Identity = 203/277 (73.29%), Postives = 220/277 (79.42%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPP---HSVSLPARGF---TT 62
           AQTMLLT+ A    K+D  S  +   R   +     F PS P    S S  A      TT
Sbjct: 2   AQTMLLTANA----KVDLRSKESLVERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTT 61

Query: 63  LAAFKSRTKVPPKKV---SKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
           +A FKS+ K P KKV    K KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 
Sbjct: 62  VALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPET-AGLERAV 182
           ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP    GL++AV
Sbjct: 122 ITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAV 181

Query: 183 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGK F+SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ET
Sbjct: 182 IPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFET 241

Query: 243 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           GVPINEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Sbjct: 242 GVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of CmoCh15G006930 vs. TrEMBL
Match: A0A0A0K7N4_CUCSA (Photosystem II protein OS=Cucumis sativus GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.8e-125
Identity = 242/274 (88.32%), Postives = 248/274 (90.51%), Query Frame = 1


Query: 1   MAAQTMLLTSGACAGHKIDFASIFTPTLRPN-AQVTRLLFNPSPPHSVSLPARGFTTLAA 60
           MAAQTMLLTSG C GH +      +  LRPN  Q TRL FNP P HSVSLP RGFTTLA 
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS--LRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAV 60

Query: 61  FKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 120
           FKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE ITGK
Sbjct: 61  FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGK 120

Query: 121 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAVIPPG 180
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAVIPPG
Sbjct: 121 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPG 180

Query: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240
           KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI
Sbjct: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240

Query: 241 NEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 271
           NEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 NEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CmoCh15G006930 vs. TrEMBL
Match: A0A067K9N1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12094 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.9e-107
Identity = 211/275 (76.73%), Postives = 228/275 (82.91%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFA-----SIFTPTLRPNAQVTRLLFNPSPPHSVSLP-ARGFTT 62
           AQTML  SG    H +D             LRP    + L+FNP      S   ++ FTT
Sbjct: 2   AQTMLFISGVSTRHVVDLKRDPLLQFQVERLRPKP-FSNLVFNPISISKTSFSTSKPFTT 61

Query: 63  LAAFKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 122
           LA FKS+ K PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAM+GFAASLLGE +
Sbjct: 62  LALFKSKAKAPPKKVEKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEAV 121

Query: 123 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIP 182
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T G+E AVIP
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GIEGAVIP 181

Query: 183 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGKSFR+ALGLKEGGPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKSFRAALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           PINE+EPLVL N++FFFIAALNPGTGKFVTDEE+D
Sbjct: 242 PINELEPLVLFNIIFFFIAALNPGTGKFVTDEEED 274

[Close]

BLAST of CmoCh15G006930 vs. TrEMBL
Match: I3SSA4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-106
Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFAS---IFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAA 62
           AQTMLL S   + + +D      +   + R   + ++L FNP P +S    +R FTTLA 
Sbjct: 2   AQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTTLAL 61

Query: 63  FKSRTKVPPKKV--SKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 122
           FKS+ K PP KV   KPKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAASLLGE +TGK
Sbjct: 62  FKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEALTGK 121

Query: 123 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK 182
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD    GL++AVIPPGK
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDKAVIPPGK 181

Query: 183 SFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 242
             R ALGL EGGPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG+PIN
Sbjct: 182 GLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGIPIN 241

Query: 243 EIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           EIEPLVL NV FFFIAALNPGTGKFV+D+ +D
Sbjct: 242 EIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273

[Close]

BLAST of CmoCh15G006930 vs. TrEMBL
Match: A9PIG1_POPTR (Photosystem II 22 kDa family protein OS=Populus trichocarpa GN=POPTR_0002s08410g PE=2 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.4e-106
Identity = 210/275 (76.36%), Postives = 230/275 (83.64%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFA-----SIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTL 62
           AQTM+L SG      +D             LRP A  +RLL+NP P  + S  +  FTTL
Sbjct: 2   AQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRP-APFSRLLYNPLPSKASS--SNAFTTL 61

Query: 63  AAFKSRTKVPPKKVS---KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 122
           A FK RTK  PKK +   KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE I
Sbjct: 62  ALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 121

Query: 123 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIP 182
           TGKGIL+QLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRG+F+DDP T G+E AVIP
Sbjct: 122 TGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDP-TTGIEGAVIP 181

Query: 183 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGKSFR+ALGLKEGGPLFGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           P+NEIEPLVL NV+FFFIAALNPGTGKFVTDE+++
Sbjct: 242 PVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDEE 272

[Close]

BLAST of CmoCh15G006930 vs. TrEMBL
Match: B9RJ42_RICCO (Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1030930 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.1e-106
Identity = 208/276 (75.36%), Postives = 227/276 (82.25%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFA-----SIFTPTLRPNAQVTRLLFNPSPPHSVSL-PARGFTT 62
           AQTML  SG    H +D             LRP    + LLF+P P +S S  P++ FTT
Sbjct: 2   AQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKP-FSSLLFSPLPTNSSSFAPSKTFTT 61

Query: 63  LAAFKSRTKVPPKKV---SKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
            A FKS+ K  PKK     K KVEDG+FGTSGGIGFTKQNELFVGRVAM+GFAASLLGEG
Sbjct: 62  FALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEG 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVI 182
           +TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T G+E AVI
Sbjct: 122 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GIEGAVI 181

Query: 183 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGK FR+ALGLKEGGPLFGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG
Sbjct: 182 PPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG 241

Query: 243 VPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           +P+NEIEPLVL NV+FFF AALNPGTGKFVTDEED+
Sbjct: 242 IPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275

[Close]

BLAST of CmoCh15G006930 vs. TAIR10
Match: AT1G44575.1 (AT1G44575.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 378.6 bits (971), Expect = 3.1e-105
Identity = 206/271 (76.01%), Postives = 226/271 (83.39%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPAR--GFTTLAAF 62
           AQTMLLTSG  AGH   F    +P  +P  +V  L  + + P  V+LP+R   F  LA F
Sbjct: 2   AQTMLLTSGVTAGH---FLRNKSPLAQP--KVHHLFLSGNSP--VALPSRRQSFVPLALF 61

Query: 63  KSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKG 122
           K +TK  PKKV KPK  VEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +TGKG
Sbjct: 62  KPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKG 121

Query: 123 ILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKS 182
           ILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T GLE+AVIPPGK+
Sbjct: 122 ILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GLEKAVIPPGKN 181

Query: 183 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 242
            RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +
Sbjct: 182 VRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQD 241

Query: 243 IEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 IEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CmoCh15G006930 vs. NCBI nr
Match: gi|449465453|ref|XP_004150442.1| (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.6e-125
Identity = 242/274 (88.32%), Postives = 248/274 (90.51%), Query Frame = 1


Query: 1   MAAQTMLLTSGACAGHKIDFASIFTPTLRPN-AQVTRLLFNPSPPHSVSLPARGFTTLAA 60
           MAAQTMLLTSG C GH +      +  LRPN  Q TRL FNP P HSVSLP RGFTTLA 
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS--LRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAV 60

Query: 61  FKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 120
           FKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE ITGK
Sbjct: 61  FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGK 120

Query: 121 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAVIPPG 180
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAVIPPG
Sbjct: 121 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPG 180

Query: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240
           KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI
Sbjct: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240

Query: 241 NEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 271
           NEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 NEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CmoCh15G006930 vs. NCBI nr
Match: gi|659133395|ref|XP_008466710.1| (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 4.4e-125
Identity = 243/274 (88.69%), Postives = 248/274 (90.51%), Query Frame = 1


Query: 1   MAAQTMLLTSGACAGHKIDFASIFTPTLRPNA-QVTRLLFNPSPPHSVSLPARGFTTLAA 60
           MAAQTMLLTSG C GH +      +  LRPN  Q TRL FNP P HSVSLPARGFT LA 
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS--LRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAV 60

Query: 61  FKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 120
           FKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE ITGK
Sbjct: 61  FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGK 120

Query: 121 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAVIPPG 180
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAVIPPG
Sbjct: 121 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPG 180

Query: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240
           KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI
Sbjct: 181 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 240

Query: 241 NEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 271
           NEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 NEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CmoCh15G006930 vs. NCBI nr
Match: gi|802635964|ref|XP_012078240.1| (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Jatropha curcas])

HSP 1 Score: 396.4 bits (1017), Expect = 4.1e-107
Identity = 211/275 (76.73%), Postives = 228/275 (82.91%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFA-----SIFTPTLRPNAQVTRLLFNPSPPHSVSLP-ARGFTT 62
           AQTML  SG    H +D             LRP    + L+FNP      S   ++ FTT
Sbjct: 2   AQTMLFISGVSTRHVVDLKRDPLLQFQVERLRPKP-FSNLVFNPISISKTSFSTSKPFTT 61

Query: 63  LAAFKSRTKVPPKKVSKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 122
           LA FKS+ K PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAM+GFAASLLGE +
Sbjct: 62  LALFKSKAKAPPKKVEKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEAV 121

Query: 123 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIP 182
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T G+E AVIP
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GIEGAVIP 181

Query: 183 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGKSFR+ALGLKEGGPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKSFRAALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           PINE+EPLVL N++FFFIAALNPGTGKFVTDEE+D
Sbjct: 242 PINELEPLVLFNIIFFFIAALNPGTGKFVTDEEED 274

[Close]

BLAST of CmoCh15G006930 vs. NCBI nr
Match: gi|1021533084|ref|XP_016163508.1| (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Arachis ipaensis])

HSP 1 Score: 394.4 bits (1012), Expect = 1.6e-106
Identity = 216/277 (77.98%), Postives = 227/277 (81.95%), Query Frame = 1


Query: 1   MAAQTMLLTSGACAGHKIDFAS-----IFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFT 60
           M AQTMLL S     + +D        +    LRP  + + L FNP P +S+S     FT
Sbjct: 1   MMAQTMLLMSSVSTTYSMDLKKDTLLQLQNQRLRP--KFSHLPFNPIPSNSLSFSPPTFT 60

Query: 61  TLAAFKSRTKVPPKKVS-KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           TLA FKS+TK PPK V  KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  TLALFKSKTKAPPKVVKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDD--PETAGLERAV 180
           TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P T G    V
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDDEPNTGG----V 180

Query: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           GVPINEIEPLVL NV FFFIAALNPGTGKFVTDEE+D
Sbjct: 241 GVPINEIEPLVLFNVAFFFIAALNPGTGKFVTDEEED 271

[Close]

BLAST of CmoCh15G006930 vs. NCBI nr
Match: gi|388510160|gb|AFK43146.1| (unknown [Lotus japonicus])

HSP 1 Score: 392.9 bits (1008), Expect = 4.6e-106
Identity = 203/272 (74.63%), Postives = 225/272 (82.72%), Query Frame = 1


Query: 3   AQTMLLTSGACAGHKIDFAS---IFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAA 62
           AQTMLL S   + + +D      +   + R   + ++L FNP P +S    +R FTTLA 
Sbjct: 2   AQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTTLAL 61

Query: 63  FKSRTKVPPKKV--SKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 122
           FKS+ K PP KV   KPKVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAASLLGE +TGK
Sbjct: 62  FKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEALTGK 121

Query: 123 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK 182
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD    GL++AVIPPGK
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDKAVIPPGK 181

Query: 183 SFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 242
             R ALGL EGGPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG+PIN
Sbjct: 182 GLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGIPIN 241

Query: 243 EIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           EIEPLVL NV FFFIAALNPGTGKFV+D+ +D
Sbjct: 242 EIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273

The following BLAST results are available for this feature:

BLAST of CmoCh15G006930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBS_SOLSG	1.9e-104	74.19	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=...	[more]
PSBS_SPIOL	5.6e-104	73.29	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 S...	[more]
PSBS_ARATH	5.6e-104	76.01	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=...	[more]
PSBS_SOLLC	1.6e-103	73.84	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=...	[more]
PSBS_TOBAC	8.3e-100	73.29	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 S...	[more]

BLAST of CmoCh15G006930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N4_CUCSA	1.8e-125	88.32	Photosystem II protein OS=Cucumis sativus GN=Csa_7G267900 PE=4 SV=1	[more]
A0A067K9N1_JATCU	2.9e-107	76.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12094 PE=4 SV=1	[more]
I3SSA4_LOTJA	3.2e-106	74.63	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A9PIG1_POPTR	5.4e-106	76.36	Photosystem II 22 kDa family protein OS=Populus trichocarpa GN=POPTR_0002s08410g...	[more]
B9RJ42_RICCO	7.1e-106	75.36	Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM...	[more]

BLAST of CmoCh15G006930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44575.1	3.1e-105	76.01	Chlorophyll A-B binding family protein	[more]

BLAST of CmoCh15G006930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465453\|ref\|XP_004150442.1\|	2.6e-125	88.32	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis sativus]	[more]
gi\|659133395\|ref\|XP_008466710.1\|	4.4e-125	88.69	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo]	[more]
gi\|802635964\|ref\|XP_012078240.1\|	4.1e-107	76.73	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Jatropha curcas]	[more]
gi\|1021533084\|ref\|XP_016163508.1\|	1.6e-106	77.98	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Arachis ipaensis]	[more]
gi\|388510160\|gb\|AFK43146.1\|	4.6e-106	74.63	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0080167	response to karrikin
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006364	rRNA processing
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051738	xanthophyll binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0019904	protein domain specific binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006930.1	CmoCh15G006930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 81..214 score: 2.
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 86..238 score: 1.1
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 64..248 score: 9.02
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 188..268 score: 1.3E-142coord: 20..162 score: 1.3E
None	No IPR available	PANTHER	PTHR14154:SF10	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 188..268 score: 1.3E-142coord: 20..162 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006930	CmaCh04G023610	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006930	CmaCh15G006800	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006930	Cla013942	Watermelon (97103) v1	cmowmB250
CmoCh15G006930	MELO3C010608	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006930	ClCG08G005640	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006930	CSPI06G20430	Wild cucumber (PI 183967)	cmocpiB307
CmoCh15G006930	Lsi08G004330	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006930	Cp4.1LG01g20490	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006930	Cp4.1LG13g04750	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006930	MELO3C010608.2	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006930	CsaV3_6G034480	Cucumber (Chinese Long) v3	cmocucB0360
CmoCh15G006930	Cla97C08G148420	Watermelon (97103) v2	cmowmbB302
CmoCh15G006930	Bhi04G001521	Wax gourd	cmowgoB0386
CmoCh15G006930	CsGy6G019860	Cucumber (Gy14) v2	cgybcmoB723
CmoCh15G006930	Carg01529	Silver-seed gourd	carcmoB1118
CmoCh15G006930	Carg24441	Silver-seed gourd	carcmoB0603

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G006930	CmoCh04G024700	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006930	Watermelon (97103) v2	cmowmbB280
CmoCh15G006930	Wax gourd	cmowgoB0404
CmoCh15G006930	Cucurbita moschata (Rifu)	cmocmoB008
CmoCh15G006930	Cucurbita moschata (Rifu)	cmocmoB245
CmoCh15G006930	Cucurbita maxima (Rimu)	cmacmoB037
CmoCh15G006930	Wild cucumber (PI 183967)	cmocpiB284
CmoCh15G006930	Cucumber (Chinese Long) v2	cmocuB276
CmoCh15G006930	Cucumber (Chinese Long) v2	cmocuB298
CmoCh15G006930	Melon (DHL92) v3.5.1	cmomeB273
CmoCh15G006930	Watermelon (Charleston Gray)	cmowcgB242
CmoCh15G006930	Watermelon (97103) v1	cmowmB279
CmoCh15G006930	Cucurbita pepo (Zucchini)	cmocpeB298
CmoCh15G006930	Bottle gourd (USVL1VR-Ls)	cmolsiB271
CmoCh15G006930	Cucumber (Gy14) v2	cgybcmoB459
CmoCh15G006930	Melon (DHL92) v3.6.1	cmomedB307
CmoCh15G006930	Silver-seed gourd	carcmoB0915
CmoCh15G006930	Cucumber (Chinese Long) v3	cmocucB0333