Carg24441 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24441
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	photosystem II 22 kDa protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_353 : 94995 .. 97019 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACACTCAAAATCCCTCTGTTCCTCAGATCCATCTTCTTTAAAACCCATCCAAAATCCCTACCCATTTGCTCAAGCTTTAACGAACTCCCCTGCATTGTTTCGCATCAAAAGCACAGCATTCATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACTCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTAATTGTCGCGTTTTCTTTTTCAGAGGAATTTATGAATCTGAGAAGAAGTAATTTAGGTTTTCTGGTTTGATTTGGTTTGTTTAGGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGTGAGTTCTTTCTCCACGATTTTCTTCTTCGAATTCTTTCGGTTTAAGCACATTGAATTAGAACTGTATGGATCTATGTTCATGATTATGAAATTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAATTTTCTTTTAAACTCATTATTTTTCTTAATTTTTTAACCTATTTTTACTTATTTTTTAAAAAACTAATTCCAATTGGAATACATTTTGTTTTTGTTCTTTTATATAATTGAACTTGTAATTATTATTTATGGTTATTTGAAGTATATTAAGAATTTTAATATTTTCTCTAGAAAAATGAAGTTCATAATAAAAAATTAATTAATTAACTAACTCAAATTAAAAAAAAAAAAAATATATATATATATATATAACTTAAGGAGAGTATTTTTGTTTATAGAGCAAATATTTTCTTAAGAAATTAAAAATCATGGTAGAGAAATAATGAGAAAATAAACCCATTTTATATATAGTTATTTTTGTAATACTATTATTAAATAATTGCATAAATATTTGTCATATTTTTGTGGGGATAAATTATTTAATTATGGCAAATATGAGTGTAATTAATTTAATTTGTTATTTTAATTAATTATTTTGTTAAATTGTAAACCCTAAATTTAAAAAAGGTTAGAATTTTGTTATTTAGTAAAATATCAGGAATAGTTAAATAAAATAATTAATTAAAATTTGCAGGCGTCGTTGCTAGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGTTAGGTCTTAAAGAAGGAGGTGAGTTACAGTACAGTGCCAAACGAATTGTTCGATTAAATCTCGATAAATCAAATCTTACATGACGGCTCTGTTTTTGTATAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAATGAATGGATCGATTCTGCTTTAGTTTCTCTGTACATGAACTTAGAGTTTGTGCAGTTTTAGCGTATTTATTTTGCATCAGCGCCCAAAAACAACGAATCTAAGGAACAAACCTTGGCTAGTGAATTGTAGGAAACCTGCAATATTTCTTTAAATTTGAGGCACAACTTGATAAGATAATCAATTTTGATTTAATTTCT

mRNA sequence

ATACACTCAAAATCCCTCTGTTCCTCAGATCCATCTTCTTTAAAACCCATCCAAAATCCCTACCCATTTGCTCAAGCTTTAACGAACTCCCCTGCATTGTTTCGCATCAAAAGCACAGCATTCATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACTCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGCGTCGTTGCTAGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGTTAGGTCTTAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAATGAATGGATCGATTCTGCTTTAGTTTCTCTGTACATGAACTTAGAGTTTGTGCAGTTTTAGCGTATTTATTTTGCATCAGCGCCCAAAAACAACGAATCTAAGGAACAAACCTTGGCTAGTGAATTGTAGGAAACCTGCAATATTTCTTTAAATTTGAGGCACAACTTGATAAGATAATCAATTTTGATTTAATTTCT

Coding sequence (CDS)

ATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACTCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGCGTCGTTGCTAGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGTTAGGTCTTAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAA

Protein sequence

MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED

Homology

[Close]

BLAST of Carg24441 vs. NCBI nr
Match: XP_022952982.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_023545993.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 529.3 bits (1362), Expect = 8.1e-147
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120
           AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Carg24441 vs. NCBI nr
Match: XP_022991058.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 524.6 bits (1350), Expect = 2.0e-145
Identity = 273/275 (99.27%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLT+RLRPNAQ SRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120
           AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Carg24441 vs. NCBI nr
Match: XP_004150442.1 (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KGN44342.1 Photosystem II protein [Cucumis sativus])

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60

Query: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of Carg24441 vs. NCBI nr
Match: XP_008466710.1 (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 470.7 bits (1210), Expect = 3.4e-129
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRP-NAQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRP N QF+RLFFNPLP+ SVSLPARGF  
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNNNQFTRLFFNPLPNHSVSLPARGFTP 60

Query: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE I
Sbjct: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of Carg24441 vs. NCBI nr
Match: XP_022141377.1 (photosystem II 22 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 463.0 bits (1190), Expect = 7.1e-127
Identity = 243/275 (88.36%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTM+L+SGVCASHGV  KRE A+L QRLRPNA  +RLFF+P P      PARG  TL
Sbjct: 1   MAAQTMLLTSGVCASHGVGAKREAAALAQRLRPNAPLARLFFDPSPLP--CSPARGLTTL 60

Query: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120
           A+FKS+ K   KKVVKPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT
Sbjct: 61  AVFKSRTKATPKKVVKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAVIP 180

Query: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGKG RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PINEIEPLVLLNV+FFFIAA+NPGTGKFVTDEEED
Sbjct: 241 PINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEED 272

[Close]

BLAST of Carg24441 vs. TAIR10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-104
Identity = 204/275 (74.18%), Postives = 225/275 (81.82%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPAR--GFRTL 62
           AQTM+L+SGV A H +  K  +A          +   LF +   +S V+LP+R   F  L
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA--------QPKVHHLFLS--GNSPVALPSRRQSFVPL 61

Query: 63  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 122
           A+FK K K   KKV KPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +T
Sbjct: 62  ALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALT 121

Query: 123 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 182
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIP
Sbjct: 122 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIP 181

Query: 183 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGK +RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PI +IEPLVLLNV FFF AA+NPG GKF+TD+ E+
Sbjct: 242 PIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Carg24441 vs. Swiss-Prot
Match: sp|Q02060|PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.0e-108
Identity = 209/277 (75.45%), Postives = 237/277 (85.56%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKRE--IASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFR 60
           MA   +++  GV  ++ + LKR   +    Q+++P +  S LFF+PLP          F+
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLP-XXXXXXXXVFK 60

Query: 61  TLAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           TLA+FKSKAK P KKV KPK KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAASLLGEG
Sbjct: 61  TLALFKSKAKAP-KKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGIL+QLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+AV
Sbjct: 121 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVD--EPTTGLEKAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK +RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           GVPINEIEPLVLLNV+FFFIAA+NPGTGKF+TD+EE+
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273

[Close]

BLAST of Carg24441 vs. Swiss-Prot
Match: sp|Q9FPP4|PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-106
Identity = 210/281 (74.73%), Postives = 229/281 (81.49%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLP----SSSVSLPARGF- 62
           AQTM+L++           R   SL +RL+P    S LF   LP    SS+ +  +  F 
Sbjct: 2   AQTMLLTANAKVD-----LRSKESLVERLKPK-PLSSLFLPSLPLRFSSSTTNFSSSKFT 61

Query: 63  -RTLAIFKSKAKVPAKKVVKPKE--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 122
             T+A+FKSKAK P KKV  PKE  KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL
Sbjct: 62  STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 121

Query: 123 LGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGL 182
           LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGL
Sbjct: 122 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGL 181

Query: 183 ERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 242
           E+AVIPPGK  +SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQL
Sbjct: 182 EKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 241

Query: 243 NIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           N ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEEED
Sbjct: 242 NFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Carg24441 vs. Swiss-Prot
Match: sp|P54773|PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.6e-106
Identity = 210/281 (74.73%), Postives = 228/281 (81.14%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLP----SSSVSLPARGF- 62
           AQTM+L++           R   SL +RL+P    S LF   LP    SSS +  +  F 
Sbjct: 2   AQTMLLTANAKVD-----LRSKESLVERLKPK-PLSSLFLPSLPLRFSSSSTNASSSKFT 61

Query: 63  -RTLAIFKSKAKVPAKKVVKPKE--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 122
             T+A+FKSKAK P KKV  PKE  KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL
Sbjct: 62  STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 121

Query: 123 LGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGL 182
           LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGL
Sbjct: 122 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGL 181

Query: 183 ERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 242
           E+AVIPPGK  +SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQL
Sbjct: 182 EKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 241

Query: 243 NIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           N ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEEED
Sbjct: 242 NFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Carg24441 vs. Swiss-Prot
Match: sp|Q9XF91|PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.7e-103
Identity = 204/275 (74.18%), Postives = 225/275 (81.82%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPAR--GFRTL 62
           AQTM+L+SGV A H +  K  +A          +   LF +   +S V+LP+R   F  L
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA--------QPKVHHLFLS--GNSPVALPSRRQSFVPL 61

Query: 63  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 122
           A+FK K K   KKV KPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +T
Sbjct: 62  ALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALT 121

Query: 123 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 182
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIP
Sbjct: 122 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIP 181

Query: 183 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGK +RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PI +IEPLVLLNV FFF AA+NPG GKF+TD+ E+
Sbjct: 242 PIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Carg24441 vs. Swiss-Prot
Match: sp|Q9SMB4|PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.4e-96
Identity = 175/197 (88.83%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 79  EKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYE 138
           EKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETG+PIYE
Sbjct: 78  EKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYE 137

Query: 139 AEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKGLRSALGLKEGGPLF 198
           AEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL++AVIPPGKG +SALGL EGGPLF
Sbjct: 138 AEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLF 197

Query: 199 GFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVLFFFI 258
            FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGVPINEIEPL+L N++FFF+
Sbjct: 198 EFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFV 257

Query: 259 AAVNPGTGKFVTDEEED 276
           AA+NPGTGKFVTDEEE+
Sbjct: 258 AAINPGTGKFVTDEEEE 274

[Close]

BLAST of Carg24441 vs. TrEMBL
Match: tr|A0A0A0K7N4|A0A0A0K7N4_CUCSA (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 7.7e-130
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60

Query: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of Carg24441 vs. TrEMBL
Match: tr|A0A1S3CS23|A0A1S3CS23_CUCME (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.2e-129
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRP-NAQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRP N QF+RLFFNPLP+ SVSLPARGF  
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNNNQFTRLFFNPLPNHSVSLPARGFTP 60

Query: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE I
Sbjct: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of Carg24441 vs. TrEMBL
Match: tr|I3SSA4|I3SSA4_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 6.6e-113
Identity = 219/275 (79.64%), Postives = 242/275 (88.00%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKRE--IASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 62
           AQTM+L S V +S+ V LK++  +   +QRLRP  +FS+L FNPLPS+S    +R F TL
Sbjct: 2   AQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRP--KFSQLSFNPLPSNSSLFSSRTFTTL 61

Query: 63  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 122
           A+FKSKAK P  KVVK K KVEDG+FGTSGGIGFTKQNELFVGRVAMIGFAASLLGE +T
Sbjct: 62  ALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEALT 121

Query: 123 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 182
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGL++AVIP
Sbjct: 122 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESP-TGLDKAVIP 181

Query: 183 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGKGLR ALGL EGGPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG+
Sbjct: 182 PGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGI 241

Query: 243 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           PINEIEPLVL NV FFFIAA+NPGTGKFV+D+ ED
Sbjct: 242 PINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273

[Close]

BLAST of Carg24441 vs. TrEMBL
Match: tr|A0A067K9N1|A0A067K9N1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12094 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.2e-111
Identity = 218/276 (78.99%), Postives = 237/276 (85.87%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKRE--IASLTQRLRPNAQFSRLFFNPLPSSSVSL-PARGFRT 62
           AQTM+  SGV   H V LKR+  +    +RLRP   FS L FNP+  S  S   ++ F T
Sbjct: 2   AQTMLFISGVSTRHVVDLKRDPLLQFQVERLRPK-PFSNLVFNPISISKTSFSTSKPFTT 61

Query: 63  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 122
           LA+FKSKAK P KKV KPKEKVEDGIFGTSGGIGFTKQNELFVGRVAM+GFAASLLGE +
Sbjct: 62  LALFKSKAKAPPKKVEKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEAV 121

Query: 123 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 182
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TG+E AVI
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGIEGAVI 181

Query: 183 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGK  R+ALGLKEGGPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG
Sbjct: 182 PPGKSFRAALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG 241

Query: 243 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           +PINE+EPLVL N++FFFIAA+NPGTGKFVTDEEED
Sbjct: 242 IPINELEPLVLFNIIFFFIAALNPGTGKFVTDEEED 274

[Close]

BLAST of Carg24441 vs. TrEMBL
Match: tr|B9RJ42|B9RJ42_RICCO (Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_1030930 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 8.0e-111
Identity = 216/277 (77.98%), Postives = 240/277 (86.64%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKRE--IASLTQRLRPNAQFSRLFFNPLPSSSVSL-PARGFRT 62
           AQTM+  SGV   H V LKR+  +     RLRP   FS L F+PLP++S S  P++ F T
Sbjct: 2   AQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPK-PFSSLLFSPLPTNSSSFAPSKTFTT 61

Query: 63  LAIFKSKAK-VPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
            A+FKSKAK  P K VVKPK+KVEDG+FGTSGGIGFTKQNELFVGRVAM+GFAASLLGEG
Sbjct: 62  FALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEG 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           +TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TG+E AV
Sbjct: 122 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGIEGAV 181

Query: 183 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGKG R+ALGLKEGGPLFGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIET
Sbjct: 182 IPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 241

Query: 243 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 276
           G+P+NEIEPLVL NV+FFF AA+NPGTGKFVTDEE++
Sbjct: 242 GIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275

The following BLAST results are available for this feature:

BLAST of Carg24441 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952982.1	8.1e-147	100.00	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_02354...	[more]
XP_022991058.1	2.0e-145	99.27	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_004150442.1	1.2e-129	88.41	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KGN44...	[more]
XP_008466710.1	3.4e-129	88.41	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo]	[more]
XP_022141377.1	7.1e-127	88.36	photosystem II 22 kDa protein, chloroplastic [Momordica charantia]	[more]

BLAST of Carg24441 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44575.1	2.1e-104	74.18	Chlorophyll A-B binding family protein	[more]

BLAST of Carg24441 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q02060\|PSBS_SPIOL	1.0e-108	75.45	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
sp\|Q9FPP4\|PSBS_SOLSG	1.2e-106	74.73	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
sp\|P54773\|PSBS_SOLLC	1.6e-106	74.73	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
sp\|Q9XF91\|PSBS_ARATH	3.7e-103	74.18	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9SMB4\|PSBS_TOBAC	4.4e-96	88.83	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]

BLAST of Carg24441 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7N4\|A0A0A0K7N4_CUCSA	7.7e-130	88.41	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
tr\|A0A1S3CS23\|A0A1S3CS23_CUCME	2.2e-129	88.41	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|I3SSA4\|I3SSA4_LOTJA	6.6e-113	79.64	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A067K9N1\|A0A067K9N1_JATCU	1.2e-111	78.99	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12094 PE=4 SV=1	[more]
tr\|B9RJ42\|B9RJ42_RICCO	8.0e-111	77.98	Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis OX=3988...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24441-RA	Carg24441-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 94..247 e-value: 4.0E-8 score: 35.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 90..220 e-value: 5.4E-8 score: 33.4
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..264
None	No IPR available	PANTHER	PTHR14154:SF39	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..264
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 79..253

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24441	Cla013942	Watermelon (97103) v1	carwmB0445
Carg24441	MELO3C010608	Melon (DHL92) v3.5.1	carmeB0451
Carg24441	ClCG08G005640	Watermelon (Charleston Gray)	carwcgB0438
Carg24441	CSPI06G20430	Wild cucumber (PI 183967)	carcpiB0483
Carg24441	CmaCh04G023610	Cucurbita maxima (Rimu)	carcmaB0621
Carg24441	CmaCh15G006800	Cucurbita maxima (Rimu)	carcmaB0620
Carg24441	CmoCh15G006930	Cucurbita moschata (Rifu)	carcmoB0603
Carg24441	CmoCh04G024700	Cucurbita moschata (Rifu)	carcmoB0604
Carg24441	Lsi08G004330	Bottle gourd (USVL1VR-Ls)	carlsiB407
Carg24441	Cp4.1LG01g20490	Cucurbita pepo (Zucchini)	carcpeB0627
Carg24441	Cp4.1LG13g04750	Cucurbita pepo (Zucchini)	carcpeB0626
Carg24441	CsGy6G019860	Cucumber (Gy14) v2	carcgybB0456
Carg24441	MELO3C010608.2	Melon (DHL92) v3.6.1	carmedB0454
Carg24441	CsaV3_6G034480	Cucumber (Chinese Long) v3	carcucB0480
Carg24441	Cla97C08G148420	Watermelon (97103) v2	carwmbB0469
Carg24441	Bhi04G001521	Wax gourd	carwgoB0538

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24441	Carg01529	Silver-seed gourd	carcarB451

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24441	Cucumber (Gy14) v2	carcgybB0455
Carg24441	Cucurbita maxima (Rimu)	carcmaB0619
Carg24441	Cucurbita moschata (Rifu)	carcmoB0602
Carg24441	Cucurbita pepo (Zucchini)	carcpeB0628
Carg24441	Wild cucumber (PI 183967)	carcpiB0482
Carg24441	Cucumber (Chinese Long) v2	carcuB0478
Carg24441	Cucumber (Chinese Long) v2	carcuB0477
Carg24441	Cucumber (Chinese Long) v3	carcucB0479
Carg24441	Bottle gourd (USVL1VR-Ls)	carlsiB406
Carg24441	Melon (DHL92) v3.5.1	carmeB0452
Carg24441	Melon (DHL92) v3.6.1	carmedB0455
Carg24441	Watermelon (Charleston Gray)	carwcgB0437
Carg24441	Watermelon (97103) v1	carwmB0446
Carg24441	Watermelon (97103) v2	carwmbB0468
Carg24441	Wax gourd	carwgoB0540