CmoCh15G006730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein, putative
Location	Cmo_Chr15 : 3289192 .. 3290120 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGCCAACTGAAGTAAAAGAACGAATTTTAAAGGGACGCATGGATTGATATTTCTTCGGATGTTTGAAAGATGACGTGTTTCATGATTACTTCCAATTAGGCTGCAGCCCAGGGCAACAAAGTTCGTGAGTGAAATGCAATAGACTTTCATGCTAGGCTGGAACTTGTAATGTGCTCTATATATATTTGACATGGAGTTGGCTTTATCTAGAACACACATGAGACAATTTTTATGAAACGAAATGTGTGCCTTTTGGTTCCAAAAATGATCAATTTAGATTCCAAAATTTCCAGCTCAAATATATTTACTCGTAGTCAATTATATTCTGTCTTGTCCATCTCTTGAATCAGTTCTTGTGGAACCGCCAAGAGGTAAGGTAAGAAATGGCTTGATGTTTTGCCAAAATGACAACTTTCCATTTCTTTGATCAAAACCTGCCTTCTCTGCCAAGAAAACTTATGGCCCCTAGAATATTGAAATGACCATGAGAGTTGGTTTCTTGTTGCCTTCTATGAAAGTTGTCTCGCAATGAAGAAACCAGCAAAATATGCAACCTCATATATCCTAATCCATGGCTCATGTTGCACTGTTCTCAATGATTTTTATCCTTTGTAAATGTTGGAACAGGTGAACTCAGATTTGATCATGGCCTTGGCAATGCAGCAGCAGGAGCATGAGATGCCCTATACGACGCTTGGGACCATCGAAAGTGATAGCGACGAAGATGAAAGGTCTGATTCCAATAGCAACAATGGTCTCGACACCAATGCCTCCTTCCAAGTTGAATATGAGGATAGTGAAGAATTGGCTGCCCTTCCTTGTGAGCATCCTTACCATTCAGAGTGTATAGTAAAATGGGTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAAGCCTTCTAAAAATGCA

mRNA sequence

TACGCCAACTGAAGTGAACTCAGATTTGATCATGGCCTTGGCAATGCAGCAGCAGGAGCATGAGATGCCCTATACGACGCTTGGGACCATCGAAAGTGATAGCGACGAAGATGAAAGGTCTGATTCCAATAGCAACAATGGTCTCGACACCAATGCCTCCTTCCAAGTTGAATATGAGGATAGTGAAGAATTGGCTGCCCTTCCTTGTGAGCATCCTTACCATTCAGAGTGTATAGTAAAATGGGTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAAGCCTTCTAAAAATGCA

Coding sequence (CDS)

ATGGCCTTGGCAATGCAGCAGCAGGAGCATGAGATGCCCTATACGACGCTTGGGACCATCGAAAGTGATAGCGACGAAGATGAAAGGTCTGATTCCAATAGCAACAATGGTCTCGACACCAATGCCTCCTTCCAAGTTGAATATGAGGATAGTGAAGAATTGGCTGCCCTTCCTTGTGAGCATCCTTACCATTCAGAGTGTATAGTAAAATGGGTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAAGCCTTCTAAAAATGCA

Homology

[Close]

BLAST of CmoCh15G006730 vs. Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 19  TIESDSDEDERSDSNSNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVC 78
           TI S   +  +   N N   ++    +++YED E+L  LPC+H YHSECI  W++I +VC
Sbjct: 266 TIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVC 325

Query: 79  PICGTEVSS 88
           P+C  EVS+
Sbjct: 326 PVCSAEVST 334

[Close]

BLAST of CmoCh15G006730 vs. Swiss-Prot
Match: BB_ARATH (E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 45  QVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEV 86
           Q++Y+  E    LPC+H YHSECI KW+ I +VCP+C +EV
Sbjct: 201 QLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241

[Close]

BLAST of CmoCh15G006730 vs. Swiss-Prot
Match: RN122_HUMAN (RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07
Identity = 17/42 (40.48%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 47  EYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSP 89
           +++  +EL  LPC+H +H +C+VKW++++ VCP+C   ++SP
Sbjct: 99  DFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIASP 140

[Close]

BLAST of CmoCh15G006730 vs. Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-07
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1


Query: 48  YEDSEELAALPCEHPYHSECIVKWVQIKRVCPIC 82
           YED  EL ALPC H +HS CIVKW++++  CP+C
Sbjct: 314 YEDGAELHALPCNHHFHSTCIVKWLKMRATCPLC 347

[Close]

BLAST of CmoCh15G006730 vs. Swiss-Prot
Match: RN122_MOUSE (RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-07
Identity = 16/42 (38.10%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 47  EYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSP 89
           +++  +EL  LPC+H +H +C+VKW++++ VCP+C   ++ P
Sbjct: 99  DFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGP 140

[Close]

BLAST of CmoCh15G006730 vs. TrEMBL
Match: A0A0A0KFS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382920 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 34  SNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 93
           + +G+D     QVEY+D EELAALPCEHPYHSECI +W+QIKRVCPICGTEVSSP  SKN
Sbjct: 157 NRSGIDRCVICQVEYDDGEELAALPCEHPYHSECIGEWLQIKRVCPICGTEVSSPNGSKN 216

[Close]

BLAST of CmoCh15G006730 vs. TrEMBL
Match: A0A061FHG8_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_035161 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-14
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 35  NNGLDTNASFQVEYEDSEELAALP-CEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 94
           N G+D  A  Q+EYE+ E + ALP CEHPYHSECI KW+QIKR+CPIC TE+SS K ++N
Sbjct: 145 NTGIDRCAICQMEYEEEEGVVALPNCEHPYHSECISKWLQIKRICPICSTEISSSKNARN 204

[Close]

BLAST of CmoCh15G006730 vs. TrEMBL
Match: A0A0B2SRX7_GLYSO (E3 ubiquitin ligase BIG BROTHER-related OS=Glycine soja GN=glysoja_018384 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 32  SNSNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPS 91
           + S +G+D     QVEYE+ E L AL CEHPYHS+CI KW+QIK+VCPICG EVS+P  +
Sbjct: 140 AESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCIRKWLQIKKVCPICGNEVSTPNLA 199

Query: 92  KN 94
            N
Sbjct: 200 SN 201

[Close]

BLAST of CmoCh15G006730 vs. TrEMBL
Match: C6T2M3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G249100 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 32  SNSNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPS 91
           + S +G+D     QVEYE+ E L AL CEHPYHS+CI KW+QIK+VCPICG EVS+P  +
Sbjct: 140 AESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCIRKWLQIKKVCPICGNEVSTPNLA 199

Query: 92  KN 94
            N
Sbjct: 200 SN 201

[Close]

BLAST of CmoCh15G006730 vs. TrEMBL
Match: A0A067K9Q5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12129 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 34  SNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 93
           + +G+D     QVEYE  E L ALPC+HPYHSECI  W+QIK++CPIC +EVSSPK  +N
Sbjct: 149 NKSGIDRCVICQVEYEGDESLVALPCDHPYHSECISNWLQIKKICPICNSEVSSPKIVRN 208

[Close]

BLAST of CmoCh15G006730 vs. TAIR10
Match: AT3G47180.1 (AT3G47180.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 32  SNSNNGLDTNASFQVEYEDSEELAAL-PCEHPYHSECIVKWVQIKRVCPICGTEVS 87
           S++ N +D     Q+E+E+ E L  L PC+HPYHSECI KW++ K++CPIC +E S
Sbjct: 153 SHNKNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPICCSEPS 208

[Close]

BLAST of CmoCh15G006730 vs. TAIR10
Match: AT3G19910.1 (AT3G19910.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.8e-11
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 19  TIESDSDEDERSDSNSNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVC 78
           TI S   +  +   N N   ++    +++YED E+L  LPC+H YHSECI  W++I +VC
Sbjct: 266 TIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVC 325

Query: 79  PICGTEVSS 88
           P+C  EVS+
Sbjct: 326 PVCSAEVST 334

[Close]

BLAST of CmoCh15G006730 vs. TAIR10
Match: AT3G63530.1 (AT3G63530.1 RING/U-box superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 45  QVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEV 86
           Q++Y+  E    LPC+H YHSECI KW+ I +VCP+C +EV
Sbjct: 201 QLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241

[Close]

BLAST of CmoCh15G006730 vs. TAIR10
Match: AT5G10650.1 (AT5G10650.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 1


Query: 45  QVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPK 90
           Q EY D +EL  +PC+H YH  C+ +W+++K  CPIC T     K
Sbjct: 479 QEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSAEEEK 523

[Close]

BLAST of CmoCh15G006730 vs. TAIR10
Match: AT2G01735.1 (AT2G01735.1 RING-finger protein for embryogenesis)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1


Query: 48  YEDSEELAALPCEHPYHSECIVKWVQIKRVCPIC 82
           YED  EL ALPC H +HS CIVKW++++  CP+C
Sbjct: 314 YEDGAELHALPCNHHFHSTCIVKWLKMRATCPLC 347

[Close]

BLAST of CmoCh15G006730 vs. NCBI nr
Match: gi|449464174|ref|XP_004149804.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 34  SNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 93
           + +G+D     QVEY+D EELAALPCEHPYHSECI +W+QIKRVCPICGTEVSSP  SKN
Sbjct: 157 NRSGIDRCVICQVEYDDGEELAALPCEHPYHSECIGEWLQIKRVCPICGTEVSSPNGSKN 216

[Close]

BLAST of CmoCh15G006730 vs. NCBI nr
Match: gi|659133455|ref|XP_008466738.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 34  SNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 93
           + +G+D     QVEY+D EELAALPC+HPYHSECI +W+QIKRVCPICGTEVSSP  SKN
Sbjct: 168 NKSGIDRCVICQVEYDDGEELAALPCQHPYHSECIGEWLQIKRVCPICGTEVSSPNGSKN 227

[Close]

BLAST of CmoCh15G006730 vs. NCBI nr
Match: gi|720070255|ref|XP_010277675.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Nelumbo nucifera])

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-15
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 29  RSDSNSNNGLDTNASFQVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEVSSP 88
           +  S   NGLD     QVEYE+ E L ALPCEHPYHS+CI KW+QIKRVCPIC TEVS  
Sbjct: 133 KCQSECKNGLDRCVICQVEYEEGESLVALPCEHPYHSDCISKWLQIKRVCPICSTEVSPS 192

Query: 89  KPSKNA 95
           + S +A
Sbjct: 193 EHSSSA 198

[Close]

BLAST of CmoCh15G006730 vs. NCBI nr
Match: gi|720070251|ref|XP_010277674.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Nelumbo nucifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 29  RSDSNSNNGLDTNASF---QVEYEDSEELAALPCEHPYHSECIVKWVQIKRVCPICGTEV 88
           +  S   NGLD N      QVEYE+ E L ALPCEHPYHS+CI KW+QIKRVCPIC TEV
Sbjct: 133 KCQSECKNGLDRNGRCVICQVEYEEGESLVALPCEHPYHSDCISKWLQIKRVCPICSTEV 192

Query: 89  SSPKPSKNA 95
           S  + S +A
Sbjct: 193 SPSEHSSSA 201

[Close]

BLAST of CmoCh15G006730 vs. NCBI nr
Match: gi|590599262|ref|XP_007019133.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-14
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 35  NNGLDTNASFQVEYEDSEELAALP-CEHPYHSECIVKWVQIKRVCPICGTEVSSPKPSKN 94
           N G+D  A  Q+EYE+ E + ALP CEHPYHSECI KW+QIKR+CPIC TE+SS K ++N
Sbjct: 145 NTGIDRCAICQMEYEEEEGVVALPNCEHPYHSECISKWLQIKRICPICSTEISSSKNARN 204

The following BLAST results are available for this feature:

BLAST of CmoCh15G006730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BBR_ARATH	1.4e-09	42.03	E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1	[more]
BB_ARATH	5.8e-08	53.66	E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1	[more]
RN122_HUMAN	1.7e-07	40.48	RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2	[more]
RIE1_ARATH	3.8e-07	58.82	E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1	[more]
RN122_MOUSE	4.9e-07	38.10	RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1	[more]

BLAST of CmoCh15G006730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS4_CUCSA	7.3e-18	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382920 PE=4 SV=1	[more]
A0A061FHG8_THECC	4.9e-14	63.33	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_035161 PE=4 S...	[more]
A0A0B2SRX7_GLYSO	8.4e-14	59.68	E3 ubiquitin ligase BIG BROTHER-related OS=Glycine soja GN=glysoja_018384 PE=4 S...	[more]
C6T2M3_SOYBN	8.4e-14	59.68	Uncharacterized protein OS=Glycine max GN=GLYMA_04G249100 PE=2 SV=1	[more]
A0A067K9Q5_JATCU	8.4e-14	60.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12129 PE=4 SV=1	[more]

BLAST of CmoCh15G006730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47180.1	2.0e-11	50.00	RING/U-box superfamily protein	[more]
AT3G19910.1	7.8e-11	42.03	RING/U-box superfamily protein	[more]
AT3G63530.1	3.3e-09	53.66	RING/U-box superfamily protein	[more]
AT5G10650.1	2.1e-08	44.44	RING/U-box superfamily protein	[more]
AT2G01735.1	2.1e-08	58.82	RING-finger protein for embryogenesis	[more]

BLAST of CmoCh15G006730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464174\|ref\|XP_004149804.1\|	1.1e-17	73.33	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Cucumis sativus]	[more]
gi\|659133455\|ref\|XP_008466738.1\|	2.3e-17	71.67	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Cucumis melo]	[more]
gi\|720070255\|ref\|XP_010277675.1\|	8.3e-15	62.12	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Nelumbo nucifera]	[more]
gi\|720070251\|ref\|XP_010277674.1\|	2.4e-14	60.87	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Nelumbo nucifera]	[more]
gi\|590599262\|ref\|XP_007019133.1\|	7.1e-14	63.33	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR024766	Znf_RING_H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006730.1	CmoCh15G006730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 40..89 score: 1.0
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 46..81 score: 4.
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 45..93 score: 1.0
None	No IPR available	PANTHER	PTHR14155:SF112	SUBFAMILY NOT NAMED	coord: 45..93 score: 1.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 47..88 score: 1.02

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006730	Cucsa.060580	Cucumber (Gy14) v1	cgycmoB0078
CmoCh15G006730	CmaCh15G006640	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006730	CmaCh04G023760	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006730	Cla013920	Watermelon (97103) v1	cmowmB250
CmoCh15G006730	Csa6G382920	Cucumber (Chinese Long) v2	cmocuB298
CmoCh15G006730	MELO3C010634	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006730	CSPI06G20190	Wild cucumber (PI 183967)	cmocpiB307
CmoCh15G006730	CsaV3_6G034230	Cucumber (Chinese Long) v3	cmocucB0360
CmoCh15G006730	Cla97C08G148640	Watermelon (97103) v2	cmowmbB302
CmoCh15G006730	Bhi04G001498	Wax gourd	cmowgoB0386
CmoCh15G006730	CsGy6G019670	Cucumber (Gy14) v2	cgybcmoB723
CmoCh15G006730	Carg01545	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G006730	CmoCh04G024890	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006730	Cucurbita maxima (Rimu)	cmacmoB037
CmoCh15G006730	Wild cucumber (PI 183967)	cmocpiB284
CmoCh15G006730	Cucumber (Chinese Long) v2	cmocuB276
CmoCh15G006730	Melon (DHL92) v3.5.1	cmomeB273
CmoCh15G006730	Watermelon (Charleston Gray)	cmowcgB242
CmoCh15G006730	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006730	Watermelon (97103) v1	cmowmB279
CmoCh15G006730	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006730	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006730	Cucurbita pepo (Zucchini)	cmocpeB298
CmoCh15G006730	Bottle gourd (USVL1VR-Ls)	cmolsiB271
CmoCh15G006730	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006730	Cucumber (Gy14) v2	cgybcmoB459
CmoCh15G006730	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006730	Melon (DHL92) v3.6.1	cmomedB307
CmoCh15G006730	Cucumber (Chinese Long) v3	cmocucB0333
CmoCh15G006730	Watermelon (97103) v2	cmowmbB280
CmoCh15G006730	Wax gourd	cmowgoB0404
CmoCh15G006730	Cucurbita moschata (Rifu)	cmocmoB008
CmoCh15G006730	Cucurbita moschata (Rifu)	cmocmoB245