CmoCh15G006560 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem II CP47 reaction center protein
Location	Cmo_Chr15 : 3172600 .. 3181912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAATCAAAAGCTCAGATTCAATTATTAGAGGGTCATATCAATAATTTGGATCCTGCCGTTAAGACCTTGAAAGAGGTCATATTCATGAAACCAGATTATGTTGATGCTCACTGTGATTTGGCATCCGCTTTGCATGCAATGAGGGAAGATGAGCGAGAAATTGAGGTGTTTCAGAAGGCAATCGACTTGAAGCTTGGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGAACTCAAATGGTGAAGGAGCTTTTATAGTTGTTGAAGCCTCAAAGTTTAAGACCATTGGAGAGAAGACTGTTTTGAGACCGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTACCCGATTGAATCGCTGTGATGTGAAATTTATTAAGAAGGAAATCATTCAACATGATCTGTCAATGTCTTATTCAGGTGGTGGCATGTCTAAGAAGTCCATAAGCAAGCCTAGCTGGAAGAAATTCTTCGTAGATTATTTTGTTCGAGAGAAAGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGCAGACATATTTACTAAAGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCTTCGGAGTTATTGAGAAATAAGCTTGCACTAAGGGAGGCTGTCACAATTTAGTGCAACTTATTTTAGTTTGAATTAGTTATGGAATATATGATATTCGTAATCTTCCAGAATATATTAGTTAGGAAATATATCTTAGATATCGTAATTAGTTGAATTTGAATAGTAGTATATTTTATTTTATTATCAGGATTTAGTTAGTTTATATTTTCTTGGTAGATATTATTTAGTATCTTGTATCCTATTTAAAGGTCGTGAATATCAATCAAGATAGAACATTTTTCGATCCCAATTCTTTTCCTCATTCTTAAATCTGTATTCTTTCGTTGAGTAATAATATTTTCATATCTATGCACACTTTTGAGTGGTAGATATTGCGTCAGGCCGGTTTTGATCCGGCAATTATGCTCGCCGGAAACTTTTCAGAACCCACCCCTGGTATGTACTCTGCTGTCGGAATTGCCATCGGAATTTTGCCGGTGATTGGTCGGGGTTTCAGAGTCCGAGGAACACGATTGAAGATTTGTTCATGTTGGTTTCTTATATATTATTTCTTACTTCCTGGAAGCTTTTATGTAGTTTCCTTCCCGGCTTCTTTTAATTATTATTATTATTATTATCATCATTATTTGACTTTTCTTAATAAAAAAAAACTTTTTCTGTAACTTCCTCGGACATGCGTGTGCCTTCTCCGTTTAGTCTGTGTAGGAAATTCAGTGTGTTTTTATTTTAAAAATATATATTTATATGGTTAATTAGGTGATTCTTAATCCAAAAAATATTCTTATCGTTGGTATATGGACCGAACTACATAATTAAAAATTTTCAATAATTCATTTTATAATTGATATATAGACATATATCATTTATTTATAAATAAATAGTCAATTTCTTTACATTTAAGGGGAAAAGAACCCGACTTGATTTTTCAAAAATTTTAAGTATTAATAAAACTCTCTGAAACTATTTCCATTCAAATTTTATTAATACAAAGATTAAAATTAAGCACCTTAAAATATAGACTATAAATATTCAATGGCAAAGATATGCAGCTGTGGGCCAATCACAGCCGTCAATCTGTAGTTCCGTCTTAAATTTTTTTTCTTTAAAACTTTAATGAAAAATAAAAGCTGAGCTGGAAATATGTGAGAAACAACGCTGAGCTGTACGGGTGTCAGGGTTGGTGAGTCACTCAGCAGTCACACGCTCACTGTGTTCCGTTTGCTTGGACATGAAAAATTATTTAAATTTCCACTATGCCACATGTCACCTTTCTATTGGGCTCGCCTAATATGTGGAAGTTGGTATAAGTCAGCTATAAAAAATTGGTTTAGGTAGGGTTTAATTTTTAAAAAATAAAAAATTAAATATAATTGATAAGTTGACTTTTAAAAAGTCAATCCAATTAGCTCGAAAATAGGGTTACAATTCAATTGTACATTTAAAATTATTAGAAAATTTAATAACATTTGATATTTGTAATTGATATTAATGATACCGTGCAACTTATAAATGTTTAATATTTGAGTTTAATGAGATTCTAGTTATGAATAAGTATAATTAAAAAATAAAGATGAGATGGGTTGGACTGTGAACTATATTTGAATTATTTGAGTTATCAGCTCCATTAATTTGAAATTTTGGGTGGGTTGAAAATATTTTCCAAATTCAAGAGCAAGAATATATTTTTACCCTTTAAATAGCTTTCAGGCGCTAAAATTTGGTCTATCGAAAATAATAATAATAATAATAAAGAAAAATAACTATTGTTAATTAGTTTAAAATAACTTGCATTATTGCATAATTAATTCATAGGTAATTGAATTAGAGACAATTTAAGGTTAATTAGTATTAACTACTTTGGTAATTTTCATTATTATTTAAAGTTGAGAATGTTAGAAATAATAATAAACCAAACCGGGTTTTTTTTAATACGTATTTGATTTATTAAATAAAATTCAAAAGAAAACCGGCCATCGGTGCCGGTGGCTAGTTTTTCTCCGGCAGAGCTGTCGGATACTCTGTTTTCAATCAGTTTGAACAATCCCCATATAAACCCCAATCTCCGGCAAATAACAGTCATAGTTTCGCACACACCACGGAACAAGAACAAATCACAGCTTTATTTAATTATATATATGTAATTTGTCAAAAACAAGCCAAAACATAAAATGCTCTGTTTTTCCGACATGAAACAGAGCAAAACCCACCCACCAAAACAAAACGGAAATCAAAATCTCAATACAGTAATGAGGCTGCCATTATTACGTGTCATCGGCGTTGGGTTCCCGGCGGCGAGCGACGGAGGAGGGATTTAAGAAAGTCCCTAATAGAGTAGTACATCATCGTCATCACCAACTTTCTTCTTGCCGGAATTACAGTGGCAACCTTCCGCGGCTTCAAACTTGAGACGGCGGTGGCCGGAAATTTGATCGGCTTGTTACGTGGGGCAGTAGTCGGAGCCATCGGAATCTGGCTGAGTTTCGTTGAGGAAATGAGCTGTAAGGAAGAAAGGTTTGTGCTTATAAAGGTTAGGAGCAAGGTTTCCGGTAAGCTTCGGCAATGGAAGTCCTTTATTTTGACAACTTGTAAAGTCAAATTCGGTACTTCCATGGCAAAGGTATTATTGACAACCTTGTAAAGTCAAAATCTAAACTTCCCCTGAGCTTCCAGAGTTATTATGCAAAAACATATTTCATTTAACATTCACAATTTTCCACAACTCATCCTCCTGATCATAGATAGATCGCCCACGTTCGAATCCATAAGCAGTGACAATTGCCCCATGAGAACTCGCTTTCGCTACGGCTCCGGTGGGTTCTCTTAACCAAGCCACTTGCCTACGAGTTGCCGGCTCATTCTTCAACAAGCACGCGGTCAGAGTCTTGGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTTCCCGATTGGGGTTTCTTCACCCTTCCCTCACAGTACTGCTTCACTATCGGTCACCCATGAGTATTGGCCTTATAAGGTGGTCCTTGCTGATTCACAAGGGATTCTACGTGCCCATGCTACTTGGGTCAGAGTTGATCCTTTTGTTCTGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGTCCCACTCGTTATCAATGGGATCAGGAATACTTCCAGCTAGAAATATATCGAAGGGTTAGTGCCCGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACNAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTTTCTTAAGAATGTTGGCTTAATCCACCACACTTAAACCGGGTGAAAGTTATTTTATTTATAATTAAATAAATTATAAACTGAAATAACAATAAAAAATATAAGAATATAATGTATAATTTAATTACGTAATTTTTAATCCAAAAATAGTACAGGGACGCGTAATTTTATTCCCAAAAAAAAAAAAAAAATAAATAAATAAATATATATATTCCTTATGGGTTTTTAAATTTCTTAACATTTTCAGAGAAACATGTAAAATAATAAAATTTAAAAACTAAACAAAAATTAAAGTTATTCAATTTTGAAGATAAAAATAGGAATATAATGTATACATCTTGTGAGCTGGAGATTGACGGCTGTGATTGGTCAGCTACAATCTTTGACCGAATTGTGGCCATTGATTAGAATTATGCTTTTTAATGGAGTTTTCATACTGAATGATGGTGGAAACTAATTACTTATGTTCTAATGGTAAGAATTTGGAGGTGACCTATGGGCATGGAGAATCCGGTTTAAATCGAATATAGTCGAGTCATTTTCGTCGTTACTAACCTTCTAACTCAGACTATCCAATCTAAACTATAAAAATTAGGTCGAGTTGAGTCGGGTTAGATTTTTGTAAAATAAAAAATTTAATATAATTTATAAATGACATTTTTTTTAGTTAGGTCAACTCAATCAACTTGTAATAAGATTACAATTCGATCTTACGTAAGTTTTTATGTAAATATTAAGATTCTGAATATATTTTTTTTATTAAACTAATTAATTGATCATAGTTTACAAAATTATTATAACTGATTATTTAATTATAATACATCTTTTTAAATATATATTTAATGTATTATGAGAACATCTTAGAACAAAAAAAATTATTAAGAGAATGAATTAAATAATATAATAATCTTATTGAAAATAATTTATCACATGAAATTTTGATAACTTATATGAATTAGAGACATCTTGTAATTTTTGTATTTTTTTTATAATAAATTCAAAATTATGAATTTTAGAGTTTATTGTAAATATTATTATTTATATTTAAGGGTAATATTTAATTTCAAATGACATTGAAACTTTAATATTATTTTATAATATTAAAATTTGATTTTTTAGAAATTATGTTAATACATTATATATTATATATATATATATATATTTATGTATTTGTTTGTAAACATTATATTAAAGTTTTAAAAATTAATCCGTACAAAATTAGAGGAGGCTTCTCTTGAAACCAATAGAATGGGCATGTGGGTAAATAGCCCATGAATTTAGATCCGACCCGGAATATTAGTCCGGATCGGGCTCTGAAATTGACCGAGAACCTGCCCGTTTCGTTCCGAATACGAAAAAGCTCTGTATACTTTACCCTGTTCGATCGAGGGTTCGAGGAGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGGTCTTTCACGGCAATTTCAAGCCGTTCAAATCTTCCTTTTGAGGTTCCTGGTGAGGGGGAAGAAGATGGTAGGGTTAATCGCCAAGATAATGAAATAGACCGGAGAGAGGATGGAGCTTCAGAAAGTTCGTCTTCAGACCTCAAGCGTCTCGCGGAATCATTTCGGGATCAAGGCAATACGCTTGCCGAGGTGCGTGTGTTTTCCTTCAACAAATTTGAGCTGAATTTGTTATGGCATTTCCGTTGGAAATTTGTTTAGCTACTACTTCCTGTTCTCAATTGTACTTAAGAACAGTATCTAATTTTGAATTTTAAATTTGAAATGTTTTATCGGAGAGAATGATAACTTCCTGAGTTGAATTGAAGAGAAAATAATTGCGCTGCAAAAACCTTGCTGGTGTGTGGTCACCGAGTTTTCATTTATGAATCACACTGGTAATATTCGAGAAAACATCTCCCAATCGTATGCGTTGTTTCTTGCAATGCAACAACAGAAAATCTTCACGAACAATTTGTTCGGAACATCATCAGCCCAAAGCTATAGGATACTGTTGAAACAGGGAGGCGGCTATCTAGGGAAGAGAAATTTGTGTATCACTTTGAAAACAATGACTAATTTTGGATCTTGCATTGGTTTGAATTGAAATTTCTTGCATACTTGACATCTTGATCCTCTATCTCGGGAGAAGCCTTTTGATTTGCTTATTACTAACACACTGAAACAATAAAACAAACCTAATAGCAAATGAACCCTTGGTTTACGGTGCAAATTATGATTCAAGTATATGGAACCACACCTCTAAAGGACCATTTGCAGAGGATTTGTTTTGGGAAGAAACCGTTTGCAGCTGTTAAATGAGTAAATTATGGTGTTTATTTTATGTTTGCGGTAACTGGTACTTTTATTTGCCTTCCGTGATTTGAATGGTTTACAATATATGAGATATTGATACAGATGTAAATCATTTATCAAAGAATGAAAAAAGGCACAAATATGGAACATTAGTGACGCACTTTCCTCTAAAAATTAGGTAATGGGCGAGGGAAACACACGTCTTTGGAAAGCTTACTTATTTCCATTTCCATTTCCGTATGCATTTGTATTTGTGTTCATAGTTTAACACATGCAATGATGCAATGGTTTTTATTCAAACGAATTTTCACTTTAAGTAATGGTATTTGCACTTGAACTATTATAAGGAAGAAGCCATTTGTATATTTGAATGCGTTGTATTATACCAGAGGTTTATTAGGAAATCTTTTGTCGAACAAGAATGTTTCCAATTGAACACGTAGCTAGATGATTCAGATCTTAGTGACTATTTGGCATTGAAATATTACTATTTGCTTCGGATCATACCGACTGTTTGGTTCATTTCTATACAAATATGGGCTTGCTCACAAACCTTTGGGTTGGTTTTTACTAGGAGAATCGACTTAAAAATGAAGCCTGTAGGTTATCCTTCTTTTATGTTGCAGTTATAGAAATTGTCCTCATGCATTGACATTTGGATGTTAAATATTTTGATTATACTCCAAGGCCATGTGCTTTTTCTTTTTTCAGAATGGGAAATTACGGGAAGCACTGGGAAAATGGGAGACTGCTCTTACCTTGATGCCTGAAAATGCAGTTCTACATGAACAAAAGTCACAAGTTCTACTGGAGATTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGTATGTTGCTTTCAATTACCTTTTACTGTTTCGATTGTCTAAGATTTTTCATATTGGTCGGTAAGCTCTATATTGAAATAACATAGGTGATCCGTGATCGGTCTATAGGGTATATGCATGGTGATATGAACTGGGTTTATTGATTAATGAAGTACAATGTCAAGGGAAGAATTCTAGAGCTTCCCCTCTCTCCCACAAGTTACCTCATAAAATGATCAGATTAGGATACCTCATAAAATGGCATTTTGTTATGATCTGGGTGATAAGCCATACCTTTTGTTTTTCTTTTTTGTTGTTGTAAGGAACTTGCTTTTCCACATTTTTCTTGTTTTATTTATTTTATACGATGGCCTATATTTGAGTATTTCATTTAATTCTATTATTAAAATAACATCAAATCTTCATGCCCTTGAAGTTGAAATATCTATTTCTGAATTCTACATTGCAGGAGCTACTGACTTAGATCCGTCATGGGCTGAGGTACAACTAACTCTTAGACTGTCAGGACAATATTAATATATCCTGCTACACCTTTTACTCTATCTTTGAAAACATCGCGCCTTCTTTTTCGTCTTCGATGGGTTTTGTCTTGTGGGATTCTATCCATTTAATTGCTTATTTTCTGTTGGGAACTTGAGTCTGGTATTCATTGGCTCCATATAGTTGGATAGAACCATTTAGATCTATTTCTCTCGTAGACCAATGGCACATTGCTCTATTATGGGAAGTTTACACACTTATAGATTCAATGTTTTAATGCCTTTCTTGGATCTCCCATCCAAGATCAGCTTCTTTTGCATTGGGTGTCTTTAGTAAGCAGTAAACAATTTTCTAGCCGACGACCTTTCCTTCTTGAGCTGATTTGCCGAGAACTTTAAACATTTAAAATTTCCTCATTCATCGTGCTGTTGACCTATGTTCAGTAAATGTGAAGAAGCTAGACTCATTTGTTAGTTTCTCAACTGATTTCTTGTCTCTTTTGATTTTGAATACAATCAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAGAGCTTTGACAGAGCATTGGCCATTAAGGTACAGTGATTTTGCCTGGTTCATCATTTTGTATTTATACTAGTATTTACACTGCATTCCTTGTCCTGACACGATCGATCTGTCTAGTATACTTGCACGGTCAGTTAAAATCTAGCCTTCATAATAGTTTCCCAAAGAAACTGTATAAATGGTGACAGTTTCGATTGTTAATATACCAACCATTTTGGATGCTAGGCTCAGTCAAAAGCTCTTGCATCATTTATCGTCCAACCAGCGCCCTCTTCGGCCTGACTGTTCATTACTGAATTTAAAGTTGAGAAACACGATTTATTCCCAAAAGCCCACTTACGGTCAAAGTCCATTAAAGCTTTGCTCTATAAGACATTGATTTGTTTTCTCGATCCCACATATTTTATGGTGAAGTAAAAATTTCTGTTGTGCACAGCCTGATTCTGGGGATGCCCAAGACGATCGCAAAACTGCAACGCATCTAATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTGAAAATCGTTATTTTGTGGGAGATAAGTTGAACAACGTTGACGCTTTATGAAAGTGTAATCTGAAAAGGAATATGATGAAGTTTGTAATTTAGGTTCTTAATGCATAGCTAGAGTTTCCCCCATGGCCAAAAGCAGCGTGTACCTCCTAAATTCATGAAATCACAGATAGTTTACAAGTAGTTACAAAATACTATGTGAATGTATAGTTTTCTTTCAAAATGTCCGTTTTAATAATTGTGTGTATATATATTCAACGACAAGTGAAGCATCGACTTTTAATATGTTATGGTTATTTTATAATTTTTGTTGGA

mRNA sequence

ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAATCAAAAGCTCAGATTCAATTATTAGAGGGTCATATCAATAATTTGGATCCTGCCGTTAAGACCTTGAAAGAGGTCATATTCATGAAACCAGATTATGTTGATGCTCACTGTGATTTGGCATCCGCTTTGCATGCAATGAGGGAAGATGAGCGAGAAATTGAGGTGTTTCAGAAGGCAATCGACTTGAAGCTTGGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGAACTCAAATGGTGAAGGAGCTTTTATAGTTGTTGAAGCCTCAAAGTTTAAGACCATTGGAGAGAAGACTGTTTTGAGACCGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTACCCGATTGAATCGCTTGGCAACCTTCCGCGGCTTCAAACTTGAGACGGCGGTGGCCGGAAATTTGATCGGCTTGTTACGTGGGGCAGTAGTCGGAGCCATCGGAATCTGGCTGAGTTTCGTTGAGGAAATGAGCTGTAAGGAAGAAAGTACTGCTTCACTATCGGTCACCCATGAGTATTGGCCTTATAAGGTGGTCCTTGCTGATTCACAAGGGATTCTACGTGCCCATGCTACTTGGGTCAGAGTTGATCCTTTTGTTCTGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGTCCCACTCGTTATCAATGGGATCAGGAATACTTCCAGCTAGAAATATATCGAAGGGTTAGTGCCCGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACNAATCCCGCAAAAGTCCGGATCGGGCTCTGAAATTGACCGAGAACCTGCCCGTTTCGTTCCGAATACGAAAAAGCTCTGTATACTTTACCCTGTTCGATCGAGGGTTCGAGGAGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGGTCTTTCACGGCAATTTCAAGCCGTTCAAATCTTCCTTTTGAGGTTCCTGGTGAGGGGGAAGAAGATGGTAGGGTTAATCGCCAAGATAATGAAATAGACCGGAGAGAGGATGGAGCTTCAGAAAGTTCGTCTTCAGACCTCAAGCGTCTCGCGGAATCATTTCGGGATCAAGGCAATACGCTTGCCGAGAATGGGAAATTACGGGAAGCACTGGGAAAATGGGAGACTGCTCTTACCTTGATGCCTGAAAATGCAGTTCTACATGAACAAAAGTCACAAGTTCTACTGGAGATTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGAGCTACTGACTTAGATCCGTCATGGGCTGAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAGAGCTTTGACAGAGCATTGGCCATTAAGCCTGATTCTGGGGATGCCCAAGACGATCGCAAAACTGCAACGCATCTAATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTGAAAATCGTTATTTTGTGGGAGATAAGTTGAACAACGTTGACGCTTTATGAAAGTGTAATCTGAAAAGGAATATGATGAAGTTTGTAATTTAGGTTCTTAATGCATAGCTAGAGTTTCCCCCATGGCCAAAAGCAGCGTGTACCTCCTAAATTCATGAAATCACAGATAGTTTACAAGTAGTTACAAAATACTATGTGAATGTATAGTTTTCTTTCAAAATGTCCGTTTTAATAATTGTGTGTATATATATTCAACGACAAGTGAAGCATCGACTTTTAATATGTTATGGTTATTTTATAATTTTTGTTGGA

Coding sequence (CDS)

ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAATCAAAAGCTCAGATTCAATTATTAGAGGGTCATATCAATAATTTGGATCCTGCCGTTAAGACCTTGAAAGAGGTCATATTCATGAAACCAGATTATGTTGATGCTCACTGTGATTTGGCATCCGCTTTGCATGCAATGAGGGAAGATGAGCGAGAAATTGAGGTGTTTCAGAAGGCAATCGACTTGAAGCTTGGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGAACTCAAATGGTGAAGGAGCTTTTATAGTTGTTGAAGCCTCAAAGTTTAAGACCATTGGAGAGAAGACTGTTTTGAGACCGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTACCCGATTGAATCGCTTGGCAACCTTCCGCGGCTTCAAACTTGAGACGGCGGTGGCCGGAAATTTGATCGGCTTGTTACGTGGGGCAGTAGTCGGAGCCATCGGAATCTGGCTGAGTTTCGTTGAGGAAATGAGCTGTAAGGAAGAAAGTACTGCTTCACTATCGGTCACCCATGAGTATTGGCCTTATAAGGTGGTCCTTGCTGATTCACAAGGGATTCTACGTGCCCATGCTACTTGGGTCAGAGTTGATCCTTTTGTTCTGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGTCCCACTCGTTATCAATGGGATCAGGAATACTTCCAGCTAGAAATATATCGAAGGGTTAGTGCCCGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACNAATCCCGCAAAAGTCCGGATCGGGCTCTGAAATTGACCGAGAACCTGCCCGTTTCGTTCCGAATACGAAAAAGCTCTGTATACTTTACCCTGTTCGATCGAGGGTTCGAGGAGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGGTCTTTCACGGCAATTTCAAGCCGTTCAAATCTTCCTTTTGAGGTTCCTGGTGAGGGGGAAGAAGATGGTAGGGTTAATCGCCAAGATAATGAAATAGACCGGAGAGAGGATGGAGCTTCAGAAAGTTCGTCTTCAGACCTCAAGCGTCTCGCGGAATCATTTCGGGATCAAGGCAATACGCTTGCCGAGAATGGGAAATTACGGGAAGCACTGGGAAAATGGGAGACTGCTCTTACCTTGATGCCTGAAAATGCAGTTCTACATGAACAAAAGTCACAAGTTCTACTGGAGATTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGAGCTACTGACTTAGATCCGTCATGGGCTGAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAGAGCTTTGACAGAGCATTGGCCATTAAGCCTGATTCTGGGGATGCCCAAGACGATCGCAAAACTGCAACGCATCTAATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTGAAAATCGTTATTTTGTGGGAGATAAGTTGAACAACGTTGACGCTTTATGA

Homology

[Close]

BLAST of CmoCh15G006560 vs. Swiss-Prot
Match: PSBB_GOSBA (Photosystem II CP47 reaction center protein OS=Gossypium barbadense GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.1e-82
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. Swiss-Prot
Match: PSBB_GOSHI (Photosystem II CP47 reaction center protein OS=Gossypium hirsutum GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.1e-82
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. Swiss-Prot
Match: PSBB_LEPVR (Photosystem II CP47 reaction center protein OS=Lepidium virginicum GN=psbB PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-81
Identity = 151/173 (87.28%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   ++ +        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. Swiss-Prot
Match: PSBB_NASOF (Photosystem II CP47 reaction center protein OS=Nasturtium officinale GN=psbB PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-81
Identity = 151/173 (87.28%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   ++ +        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. Swiss-Prot
Match: PSBB_CRUWA (Photosystem II CP47 reaction center protein OS=Crucihimalaya wallichii GN=psbB PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-81
Identity = 151/173 (87.28%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   ++ +        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TrEMBL
Match: A0A0A0KH06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376230 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 176/213 (82.63%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 417 MKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEI-----DRREDGASE 476
           MKLTWKNKGNSKKRS T IS+RSNLPFEVPG  EED R N Q  E+     DR ED AS+
Sbjct: 1   MKLTWKNKGNSKKRSLTTISTRSNLPFEVPGVVEEDDRANPQVKEVTAQPVDRSEDEASD 60

Query: 477 SSSSDLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEA 536
            S SDLKRLAESF+ QGNTLAE GK REALGKWETALTLMPENAVLHEQK+QVLLE+GEA
Sbjct: 61  RSLSDLKRLAESFQAQGNTLAEGGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGEA 120

Query: 537 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRKT 596
           WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGD QDDR+T
Sbjct: 121 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDVQDDRQT 180

Query: 597 ATHLIKRRKQLHSAGLSSSENRYFVGDKLNNVD 625
           A  LIKRRKQLHSAGLSSS+NRY VG+KL++ D
Sbjct: 181 AMRLIKRRKQLHSAGLSSSKNRYLVGEKLSDAD 213

[Close]

BLAST of CmoCh15G006560 vs. TrEMBL
Match: H9LIN1_GOSBA (Photosystem II CP47 reaction center protein OS=Gossypium barbadense GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.0e-80
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TrEMBL
Match: I6M0R3_9ROSI (Photosystem II CP47 reaction center protein OS=Gossypium areysianum GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.0e-80
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TrEMBL
Match: A0A0S2IEL5_9ROSI (Photosystem II CP47 reaction center protein OS=Cucurbita foetidissima GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.0e-80
Identity = 152/173 (87.86%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  +    L   +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRDKEGRELLVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TrEMBL
Match: A0A0E3D954_9ROSI (Photosystem II CP47 reaction center protein OS=Gossypium laxum GN=psbB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.0e-80
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 303.9 bits (777), Expect = 2.3e-82
Identity = 150/173 (86.71%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAW+KIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWAKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   ++ +        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. TAIR10
Match: AT1G77230.1 (AT1G77230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 209.5 bits (532), Expect = 5.8e-54
Identity = 116/215 (53.95%), Postives = 148/215 (68.84%), Query Frame = 1


Query: 417 MKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEIDRREDGASESSSS- 476
           MKLTW    N KKRS   +S+  +LPFE     E    ++ ++++IDRR+      SS  
Sbjct: 1   MKLTWNK--NPKKRSRLVLSNFPDLPFEKDDSLESQSHLHFREDDIDRRQTTDQLDSSEV 60

Query: 477 -----------DLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQV 536
                      + K+LAES R QG+  AE GK +EALGKWE AL L+PE+A+LHEQK+QV
Sbjct: 61  GGNHPRENFDVEAKKLAESIRAQGDKFAEEGKYQEALGKWEAALNLVPEDAILHEQKAQV 120

Query: 537 LLEIGEAWGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGD 596
           LLE+G+AW ALKAATRAT++DPSWAEAW TLGRAQLNFGEPDSAI SF+ AL I  DS +
Sbjct: 121 LLELGDAWKALKAATRATEIDPSWAEAWTTLGRAQLNFGEPDSAIRSFESALLINADSRE 180

Query: 597 AQDDRKTATHLIKRRKQLHSAGLSSSENRYFVGDK 620
           A+DD K+A  LIK+R+QL ++G  +   R+ V DK
Sbjct: 181 AKDDLKSAKQLIKKREQLQTSGQDTDTTRFVVNDK 213

[Close]

BLAST of CmoCh15G006560 vs. TAIR10
Match: AT2G32450.1 (AT2G32450.1 Calcium-binding tetratricopeptide family protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-21
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 40  AVKTLKEVIFMKPDYVDAHCDLASALHAMREDEREIEVFQKAIDLKLGHVDALYILGGLY 99
           AVK L+E I++KPDY DAHCDLAS+LHAM EDER IEVFQ+AIDLK GHVDALY LGGLY
Sbjct: 358 AVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLY 417

Query: 100 VN 102
           ++
Sbjct: 418 MD 419

[Close]

BLAST of CmoCh15G006560 vs. TAIR10
Match: AT1G05150.1 (AT1G05150.1 Calcium-binding tetratricopeptide family protein)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-21
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 40  AVKTLKEVIFMKPDYVDAHCDLASALHAMREDEREIEVFQKAIDLKLGHVDALYILGGLY 99
           AVK L+E I++KPDY DAHCDLAS+LH+M EDER IEVFQ+AIDLK GHVDALY LGGLY
Sbjct: 363 AVKALEEAIYLKPDYADAHCDLASSLHSMGEDERAIEVFQRAIDLKPGHVDALYNLGGLY 422

Query: 100 VN 102
           ++
Sbjct: 423 MD 424

[Close]

BLAST of CmoCh15G006560 vs. TAIR10
Match: AT4G12400.2 (AT4G12400.2 stress-inducible protein, putative)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-06
Identity = 27/103 (26.21%), Postives = 50/103 (48.54%), Query Frame = 1


Query: 480 LAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEAWGALKAAT 539
           +AE  + +GN    +G    A+  +  A+ L P N +L+  +S     +     AL  A 
Sbjct: 1   MAEEAKSKGNAAFSSGDYATAITHFTEAINLSPTNHILYSNRSASYASLHRYEEALSDAK 60

Query: 540 RATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDS 583
           +  +L P W++ +  LG A +   + D A++S+ + L I P +
Sbjct: 61  KTIELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDPSN 103

[Close]

BLAST of CmoCh15G006560 vs. NCBI nr
Match: gi|449463430|ref|XP_004149437.1| (PREDICTED: tetratricopeptide repeat protein 33 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 2.6e-88
Identity = 176/213 (82.63%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 417 MKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEI-----DRREDGASE 476
           MKLTWKNKGNSKKRS T IS+RSNLPFEVPG  EED R N Q  E+     DR ED AS+
Sbjct: 1   MKLTWKNKGNSKKRSLTTISTRSNLPFEVPGVVEEDDRANPQVKEVTAQPVDRSEDEASD 60

Query: 477 SSSSDLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEA 536
            S SDLKRLAESF+ QGNTLAE GK REALGKWETALTLMPENAVLHEQK+QVLLE+GEA
Sbjct: 61  RSLSDLKRLAESFQAQGNTLAEGGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGEA 120

Query: 537 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRKT 596
           WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGD QDDR+T
Sbjct: 121 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDVQDDRQT 180

Query: 597 ATHLIKRRKQLHSAGLSSSENRYFVGDKLNNVD 625
           A  LIKRRKQLHSAGLSSS+NRY VG+KL++ D
Sbjct: 181 AMRLIKRRKQLHSAGLSSSKNRYLVGEKLSDAD 213

[Close]

BLAST of CmoCh15G006560 vs. NCBI nr
Match: gi|659081980|ref|XP_008441602.1| (PREDICTED: tetratricopeptide repeat protein 33 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 3.5e-85
Identity = 170/213 (79.81%), Postives = 184/213 (86.38%), Query Frame = 1


Query: 417 MKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEI-----DRREDGASE 476
           MKLTWKNK NSKKRS   ISSRSNLPFEVPGE  ED   N  D E+     D+ E  AS+
Sbjct: 1   MKLTWKNKANSKKRSLAPISSRSNLPFEVPGEVGEDDAANPLDKEVTAQPVDQSEGEASD 60

Query: 477 SSSSDLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEA 536
            S SDLKRLAESF+ QG+TLAE+GK REALGKWETALTLMPENA+LHEQK+QVLLE+GEA
Sbjct: 61  RSFSDLKRLAESFQAQGDTLAESGKFREALGKWETALTLMPENAILHEQKAQVLLEVGEA 120

Query: 537 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRKT 596
           WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFD+ALAIKPDSGDAQDDR+T
Sbjct: 121 WGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDKALAIKPDSGDAQDDRQT 180

Query: 597 ATHLIKRRKQLHSAGLSSSENRYFVGDKLNNVD 625
           A  LIKRRKQLHS+GLSSS NRY VG+KL+N D
Sbjct: 181 AMRLIKRRKQLHSSGLSSSNNRYLVGEKLSNAD 213

[Close]

BLAST of CmoCh15G006560 vs. NCBI nr
Match: gi|757608681|ref|WP_042854721.1| (photosystem II chlorophyll-binding protein CP47 [Staphylococcus aureus])

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. NCBI nr
Match: gi|952954797|gb|ALO22154.1| (PsbB (plastid) [Cucurbita foetidissima])

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 152/173 (87.86%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  +    L   +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRDKEGRELLVRRMPTFF 363

[Close]

BLAST of CmoCh15G006560 vs. NCBI nr
Match: gi|119368525|ref|YP_913213.1| (PSII 47kD protein [Gossypium barbadense])

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 152/173 (87.86%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 225 DPFVLGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 284
           DPFV GGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF
Sbjct: 191 DPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAF 250

Query: 285 VVAGTMWYGSATTPIELFGPTRYQWDQEYFQLEIYRRVSARLAENQSLSEAWSKIPEKLA 344
           VVAGTMWYGSATTPIELFGPTRYQWDQ YFQ EIYRRVSA LAENQSLSEAWSKIPEKLA
Sbjct: 251 VVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWSKIPEKLA 310

Query: 345 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHXSRKSPDRALKLTENLPVSF 398
           FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGH   +  D        +P  F
Sbjct: 311 FYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFF 363

The following BLAST results are available for this feature:

BLAST of CmoCh15G006560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBB_GOSBA	8.1e-82	87.86	Photosystem II CP47 reaction center protein OS=Gossypium barbadense GN=psbB PE=3...	[more]
PSBB_GOSHI	8.1e-82	87.86	Photosystem II CP47 reaction center protein OS=Gossypium hirsutum GN=psbB PE=3 S...	[more]
PSBB_LEPVR	1.8e-81	87.28	Photosystem II CP47 reaction center protein OS=Lepidium virginicum GN=psbB PE=3 ...	[more]
PSBB_NASOF	1.8e-81	87.28	Photosystem II CP47 reaction center protein OS=Nasturtium officinale GN=psbB PE=...	[more]
PSBB_CRUWA	1.8e-81	87.28	Photosystem II CP47 reaction center protein OS=Crucihimalaya wallichii GN=psbB P...	[more]

BLAST of CmoCh15G006560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH06_CUCSA	1.8e-88	82.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376230 PE=4 SV=1	[more]
H9LIN1_GOSBA	9.0e-80	87.86	Photosystem II CP47 reaction center protein OS=Gossypium barbadense GN=psbB PE=3...	[more]
I6M0R3_9ROSI	9.0e-80	87.86	Photosystem II CP47 reaction center protein OS=Gossypium areysianum GN=psbB PE=3...	[more]
A0A0S2IEL5_9ROSI	9.0e-80	87.86	Photosystem II CP47 reaction center protein OS=Cucurbita foetidissima GN=psbB PE...	[more]
A0A0E3D954_9ROSI	9.0e-80	87.86	Photosystem II CP47 reaction center protein OS=Gossypium laxum GN=psbB PE=3 SV=1	[more]

BLAST of CmoCh15G006560 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00680.1	2.3e-82	86.71	ATCG00680.1 photosystem II reaction center protein B	[more]
AT1G77230.1	5.8e-54	53.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G32450.1	1.3e-21	77.42	Calcium-binding tetratricopeptide family protein	[more]
AT1G05150.1	2.9e-21	75.81	Calcium-binding tetratricopeptide family protein	[more]
AT4G12400.2	1.2e-06	26.21	stress-inducible protein, putative	[more]

BLAST of CmoCh15G006560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463430\|ref\|XP_004149437.1\|	2.6e-88	82.63	PREDICTED: tetratricopeptide repeat protein 33 [Cucumis sativus]	[more]
gi\|659081980\|ref\|XP_008441602.1\|	3.5e-85	79.81	PREDICTED: tetratricopeptide repeat protein 33 [Cucumis melo]	[more]
gi\|757608681\|ref\|WP_042854721.1\|	1.3e-79	87.86	photosystem II chlorophyll-binding protein CP47 [Staphylococcus aureus]	[more]
gi\|952954797\|gb\|ALO22154.1\|	1.3e-79	87.86	PsbB (plastid) [Cucurbita foetidissima]	[more]
gi\|119368525\|ref\|YP_913213.1\|	1.3e-79	87.86	PSII 47kD protein [Gossypium barbadense]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000932	PS_antenna-like
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Vocabulary: **Biological Process**
Term	Definition
GO:0019684	photosynthesis, light reaction
GO:0009767	photosynthetic electron transport chain

Vocabulary: **Cellular Component**
Term	Definition
GO:0009521	photosystem
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016168	chlorophyll binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0008150	biological_process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006560.1	CmoCh15G006560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 223..381 score: 3.4
IPR000932	Photosystem antenna protein-like	unknown	SSF161077	Photosystem II antenna protein-like	coord: 220..392 score: 8.89
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 14..101 score: 1.9E-9coord: 481..598 score: 4.2
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 34..103 score: 1.29E-8coord: 480..599 score: 2.6
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 481..582 score: 23.914coord: 21..88 score:
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 481..514 score: 0.52coord: 549..582 score: 7.3E-5coord: 515..548 score: 340.0coord: 55..88 score:
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 55..88 score: 6.461coord: 481..514 score: 9.175coord: 515..548 score: 5.222coord: 549..582 score: 12
None	No IPR available	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 225..377 score: 1.0E
None	No IPR available	PANTHER	PTHR33180:SF8	SUBFAMILY NOT NAMED	coord: 225..377 score: 1.0E
None	No IPR available	PFAM	PF13432	TPR_16	coord: 533..582 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006560	Cucsa.328090	Cucumber (Gy14) v1	cgycmoB0905
CmoCh15G006560	CmaCh15G006460	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006560	Cla013900	Watermelon (97103) v1	cmowmB250
CmoCh15G006560	Csa6G376230	Cucumber (Chinese Long) v2	cmocuB298
CmoCh15G006560	MELO3C008461	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006560	ClCG08G006070	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006560	CSPI06G19970	Wild cucumber (PI 183967)	cmocpiB307
CmoCh15G006560	Lsi08G004750	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006560	Cp4.1LG13g04210	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006560	MELO3C008461.2	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006560	CsaV3_6G033990	Cucumber (Chinese Long) v3	cmocucB0360
CmoCh15G006560	Cla97C08G148830	Watermelon (97103) v2	cmowmbB302
CmoCh15G006560	Bhi04G001474	Wax gourd	cmowgoB0386
CmoCh15G006560	CsGy6G019450	Cucumber (Gy14) v2	cgybcmoB723
CmoCh15G006560	Carg01563	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006560	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh15G006560	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G006560	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006560	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006560	Cucurbita pepo (Zucchini)	cmocpeB299
CmoCh15G006560	Silver-seed gourd	carcmoB0092