CmoCh14G016220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G016220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 12886446 .. 12890636 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCGGGGCCGACATTTCAATTTGAACGATGCCGGCCGAAACTCAGTCATGGAGTTAGATGGCGTCAAAGGCTGTAGGAAGAAGAAGATGATGATCCGCTTCATAAATTTATCGATTACGCGAGGTCTTTGATATTATTTGAAGACGAAGAAAACTTCGATCCTAATGTTAATGGAACGGAGACCAATGCGGCCGGTTGGAGTTTGATCGCCTCCCGGTTCCTCAGAACTTGTATCGCCTACTCGAGTTCTGTTACCGCTGCGATTTTGCTATTTGAGCTCTCGCAGGTACCGCGAATTCGAACTCCTCTATAAGGTTTCTTTCTTTGACTGTAGATACTTTGAGCAAAAATTTATGTTAATTGCCTGATTTCCAATCAAAGGAAGATGCAACAGTGAGGACTGCCTGAATTCTTGATGTTTCACAATTGGATTAAAGATTTCACCGTAATTGATTCCAGGAGTTCAACGGAGTCTCTTGGTTTCAAGTTTGAATTTGTATTAATACGCCGTCTGAGTTCCTTCTTAATATGTACATCCACTTATTACCAAGTGTTCATAACAACGAGAGGGTGGTATTAGGGCCCGTGTTTTATTCTAAATGAGGGATGATTACTTAATACTCTGTCATATCTTGGTTCTAGGCTTTTGAAATTGATGCGTCCTTAGAGTTGCTTGATCCAATTGTAGTCCTGTTGTCCTTTTAAGTATTAGGCAATGGGGGACAACCTCGAGTAATCCAGATTGCACCCTGACCACACATATTGGTTTTTAAGTATTAGTATCCTCTCAACTGTCCTTTGCGATTCGGTATCTCTTCTTCTGAGAGGCTAGTCAACTGTCAATTATGAAATTATCCATGTGAGTAATGATTGGTTGCCGCCCAAGCTTCATAATCTGAATTGGAAATAAAAAAATTTAATGGCGATGAAGGCATTCATTTCTTCTCTAGGAGGAGAATGCATTCTGAGCTTCTTAATCTCTCCAGTCAAGTTTGTGTGATTAGCGTATATAGGAAGAATAAAATTTTGCCAAAGCATAAAATTGTTTACACTGATGTAACCTGATTGATCCAATTTTCTAGTGGTGGGAGTTGGGATTAGCCATGAAAGCTCTGGTGACAAGAGATGTTCTGGGATGAAAGAAATTTAGCTGAAGTAAAACATGGTGCATAATGCAGCATCTTGTACAGCTGCATTTATGATGTTGGTGTTCTTTTGTTTTTCCCCCTCACTAAAATGGTCAATGCTTAAACTTTAGAGGCTGTAGTTTCACAAAAGGATGGATTTTGGATATCCAATCATGAACTGACTGCCTTATCTTCAATATTTGCAGGATTGAATCTATTGGTCCACTGGAAATTTATGAGAAGATTAATGGCTTGCGGATGATACAAATCAGTCTTGTTGATAATGATGATTTCAATTTAAAGTTTATCGGGGGGTGAACAGGGGTTACTAGCCAATATTATATGGTGAATCTTTTAGTTTGATGTTAACTATTTCAAGAATATTCTTGCATGATTATATCAACGTAACAGTTCTCATTTGAACAGTGTTGGTTTACTTGCACTTGATAGACCATAAATTGCAACTGTAATCGAGAATGGCATTGGAACAAGTGATGATCTTTGTCTTGAATATGTTAGTGCAACACAGTTATATTTGGTGCCTTGCATTCATCATAAGGAGCAAGTGAGTTAGTGCAACACAGTTATATTTGGTGCCTTGCATTCATCATAAGGAGCAAGTGAGTTAGTGCAACACAGTTATATTTGGTGCCTTGCATTCATCATAAGGAGCAAGTGAGTTGTAGAACCCCACCTCTCCCCACACCATGCACACACAAAATTAAGAGACTTCCCTGTATCTTGGATCCCGTCAATATGTAAATATTCCACAACACAGGTCTCTGTTTTAGCACAAATATAAACCAAGCTTCAAGAACGCTTAGCACGTCGTATCCTTCACTTAGTACATCTTTATGAAGATAAATCTTAATAGCCATCTGTTTATGAAGTTTACAGTCTTTTGTGGTCGACCTTCAAGACAAGATGACTGGCATTAGCTTATATGGTAAGGTTTTATGAGTCTTCACATTTATATAGCACTTCAAATAACAAAAAATTCTCATCACCTATACTTCCACTCATTTTTGAGTTCCACTTTTCTTTTTCTTTTCTTTGTGTCTTCTCTTGTAAAGATCGGTGGACATACAGTATATATAAGTGTCCTGACATGCACCATAAACAAGAATCGGTGAGCTAATTCAAACAATTTACTCCGTTATCTAATAAATAAATTGAAAGTCTTGGACAATTTGAAATGCTTATGTACATAAAATAATAACTAGTCGTTGATTTGAGGATTTTCTCCTTTTCGATATTTTGGCGATTTCTTCATGGCATTTCTAATTTGATTTGAGTCTTTTGCTTGTGAAGCTTGGAGGCTTTATGGATTGAGAATCATGTTGGAGCTTCTTTTGTCAACTTTAGCTGCTTGCCAACATTGTTTTCTCCTGGTCTTCTTAAACTTTCACGACTTTCTGATCTTACGAAGCAATACTCATGGTACAAAGGTGAAGCTTTTTCTTTTTCCTTCTCGTTCTTTCTTTGTCTATAGTATGTTATGTGTGATGAGGAACTTTTCAAAGTGGAAAGGTTTCAGATTTCTTTCCATTTACCAGGACCACTAGAGAGCTCTAATCGCCCATCCCCAATAGGCCACCTCGCTGAAAGGATTTATGGGAGCCGTACATCAATATCCTTTGGAGATCAAGTGAGGCAAAGCTCCGTACCTTTGTTGCTTAGAAGCAGCAAAGTAGGGATTCCTCATTCTTATAACGTAATATATAAACAACAAACGTTAGGAGAGAGACAAATGACCAATGAAGTTTCTCTTTTTGCAACCTTTATTGGGAATCTAGGGAAAATTAGGCTTGATAACGATTTTATTACTGATTTCTGTTTTTGAAAATTATGTTTGGTTCCTCTTAATTTCTTTATTATGGATTTAGAAACATAATAGTGAATTGAAGGAGGAAGATCGGCAGATGTGGAAATAATGACTATTTTGTTAATGATCCACTTTCATGGGAGATTACTTTGCACTTGTGAATAATGCTTCATTCAGGAACTATCTTTTTAGCAGTGGCTGCTGCAAGACGGCAAAAGGTATTGTAAAGACCTACAGGTATTATTCATTCTTCATTTCAATGTCTTGAACTGCAATACCCAATTAAATTCATAACACAGGCATTTTAATGATATTTTTGTCCTTTTTTTTTTTTTTCATATTTTATGATGCATTATAATCATTTATCTAAAGATTTGGACGTTGAAATATTCTCGCCCTTTGTGGTTAGAAATTTAATGGAAACAAAAGTGTAAGATCCTAGTTATTATAAAGGTTGAGTGTAGACTAAAGAAATATTCTTTAATCCATTACACATTTGTGGTTATATAGACCTTTCAAATAGGTTCGTGACCCCTATACTTGACCTTTTTGGTAGCATTAATCCTAAGTCCAAGGTCTAGTTTTGAGCCAAAAAAGTATAGACAGAAATTCTTTAGGCTTGCGTGATACAAATTAATAAACAATAATCTCTTGATTTGAATTAGAATCTAAAACCAAACATTTTAAACGCTTCATGTTCTGATCAAGCTTTTAAATATTGATATTGCTCGAAATGTTTGATTCTTTTATGATTAATATTTGGTCTAAACTGTGATATTTTATTGTATGTCATTCATTTTTGTTTCGATTTAAGATTTATTTTAGTCCCAAATATAATGTTTTAATATAGGTTTAATCATGAAGCATGAGTTAAAACTTGTTAAAGGCAAGTAATATAAGAGTCTTGTGACTTTTAGAATTGCACCACCAATTCTTGAATTATATTTGAAGCAATGAATTTGTTAATTCTGTTGCTCTTTAGGCAAAAGTTTAATATGCTTTCGGTGATTATTGTGAAGTTCATGTGTTTCGTGCTCATTTCTACTGTCTGTTTATCCAATTCCCCAAGCCACCCCTTGATTCTGTTTCTGCCTCCATAACCTTATATATCACTCCTACATCCTTCTTAATTCATTTCAAAATCACCTGTTCTTCTTTCTTTCTTTCTTTCCTTAATTATTTTTTCTGTCCATCTTCTTTGCAGGGCATCACCAGATTTTAAGCCCTCTTAA

mRNA sequence

ATGTCTTCTCGGGGCCGACATTTCAATTTGAACGATGCCGGCCGAAACTCAGTCATGGAGTTAGATGGCGTCAAAGGCTGTAGGAAGAAGAAGATGATGATCCGCTTCATAAATTTATCGATTACGCGAGGTACCGCGAATTCGAACTCCTCTATAAGGATTGAATCTATTGGTCCACTGGAAATTTATGAGAAGATTAATGGCTTGCGGATGATACAAATCAGTCTTGTTGATAATGATGATTTCAATTTAAAGTTTATCGGGGGCTTGGAGGCTTTATGGATTGAGAATCATGTTGGAGCTTCTTTTGTCAACTTTAGCTGCTTGCCAACATTGTTTTCTCCTGGTCTTCTTAAACTTTCACGACTTTCTGATCTTACGAAGCAATACTCATGGTACAAAGGACCACTAGAGAGCTCTAATCGCCCATCCCCAATAGGCCACCTCGCTGAAAGGATTTATGGGAGCCGTACATCAATATCCTTTGGAGATCAAGTGAGGCAAAGCTCCGTACCTTTGAACTATCTTTTTAGCAGTGGCTGCTGCAAGACGGCAAAAGGTATTGTAAAGACCTACAGGGCATCACCAGATTTTAAGCCCTCTTAA

Coding sequence (CDS)

ATGTCTTCTCGGGGCCGACATTTCAATTTGAACGATGCCGGCCGAAACTCAGTCATGGAGTTAGATGGCGTCAAAGGCTGTAGGAAGAAGAAGATGATGATCCGCTTCATAAATTTATCGATTACGCGAGGTACCGCGAATTCGAACTCCTCTATAAGGATTGAATCTATTGGTCCACTGGAAATTTATGAGAAGATTAATGGCTTGCGGATGATACAAATCAGTCTTGTTGATAATGATGATTTCAATTTAAAGTTTATCGGGGGCTTGGAGGCTTTATGGATTGAGAATCATGTTGGAGCTTCTTTTGTCAACTTTAGCTGCTTGCCAACATTGTTTTCTCCTGGTCTTCTTAAACTTTCACGACTTTCTGATCTTACGAAGCAATACTCATGGTACAAAGGACCACTAGAGAGCTCTAATCGCCCATCCCCAATAGGCCACCTCGCTGAAAGGATTTATGGGAGCCGTACATCAATATCCTTTGGAGATCAAGTGAGGCAAAGCTCCGTACCTTTGAACTATCTTTTTAGCAGTGGCTGCTGCAAGACGGCAAAAGGTATTGTAAAGACCTACAGGGCATCACCAGATTTTAAGCCCTCTTAA

Homology

[Close]

BLAST of CmoCh14G016220 vs. TrEMBL
Match: A0A0A0L5D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 37  INLSITRGTANSNSSIRIESIGPLEIYEKINGLRMIQISLVDNDDFNLKFIGGL------ 96
           ++++  R T  +  S+RIE     E+  K+  +R   +  V     +  FI GL      
Sbjct: 429 LDIANERNTTEAGFSMRIED-NTGEVLAKLRFVRSWSLGRVSVG--HTVFISGLTCTKNK 488

Query: 97  ---EALWIENHVGASFVNFSCLPTLFSPGLL-KLSRLSDLT 128
              EALWIENHVGASFVN SCLP L +   L KLSRLSDLT
Sbjct: 489 NRLEALWIENHVGASFVNLSCLPALLTSSCLHKLSRLSDLT 526

[Close]

BLAST of CmoCh14G016220 vs. NCBI nr
Match: gi|659076944|ref|XP_008438949.1| (PREDICTED: uncharacterized protein LOC103483891 isoform X1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 40  SITRGTANSNSSIRIESIGPLEIYEKINGLRMIQISLVDNDDFNLKFIGGLEALWIENHV 99
           S+  GT  S  + RIESIGPLEI+EKINGLRMIQI LVDND F LKF+     LW E  +
Sbjct: 256 SVNEGTTYSLYA-RIESIGPLEIHEKINGLRMIQIILVDNDGFKLKFL-----LWGEQVL 315

Query: 100 GASFVNFSCLPTLFSP 116
            A  ++   +  L  P
Sbjct: 316 LAKLLSVGSVLALDRP 325

[Close]

BLAST of CmoCh14G016220 vs. NCBI nr
Match: gi|449433435|ref|XP_004134503.1| (PREDICTED: uncharacterized protein LOC101215087 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 37  INLSITRGTANSNSSIRIESIGPLEIYEKINGLRMIQISLVDNDDFNLKFIGGL------ 96
           ++++  R T  +  S+RIE     E+  K+  +R   +  V     +  FI GL      
Sbjct: 429 LDIANERNTTEAGFSMRIED-NTGEVLAKLRFVRSWSLGRVSVG--HTVFISGLTCTKNK 488

Query: 97  ---EALWIENHVGASFVNFSCLPTLFSPGLL-KLSRLSDLT 128
              EALWIENHVGASFVN SCLP L +   L KLSRLSDLT
Sbjct: 489 NRLEALWIENHVGASFVNLSCLPALLTSSCLHKLSRLSDLT 526

[Close]

BLAST of CmoCh14G016220 vs. NCBI nr
Match: gi|778679070|ref|XP_011651084.1| (PREDICTED: uncharacterized protein LOC101215087 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 37  INLSITRGTANSNSSIRIESIGPLEIYEKINGLRMIQISLVDNDDFNLKFIGGL------ 96
           ++++  R T  +  S+RIE     E+  K+  +R   +  V     +  FI GL      
Sbjct: 434 LDIANERNTTEAGFSMRIED-NTGEVLAKLRFVRSWSLGRVSVG--HTVFISGLTCTKNK 493

Query: 97  ---EALWIENHVGASFVNFSCLPTLFSPGLL-KLSRLSDLT 128
              EALWIENHVGASFVN SCLP L +   L KLSRLSDLT
Sbjct: 494 NRLEALWIENHVGASFVNLSCLPALLTSSCLHKLSRLSDLT 531

[Close]

BLAST of CmoCh14G016220 vs. NCBI nr
Match: gi|659076946|ref|XP_008438950.1| (PREDICTED: uncharacterized protein LOC103483891 isoform X2 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-07
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 40  SITRGTANSNSSIRIESIGPLEIYEKINGLRMIQISLVDNDDFNLKFI 88
           S+  GT  S  + RIESIGPLEI+EKINGLRMIQI LVDND F LKF+
Sbjct: 148 SVNEGTTYSLYA-RIESIGPLEIHEKINGLRMIQIILVDNDGFKLKFL 194

The following BLAST results are available for this feature:

BLAST of CmoCh14G016220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G016220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D2_CUCSA	3.3e-07	43.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166300 PE=4 SV=1	[more]

BLAST of CmoCh14G016220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G016220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076944\|ref\|XP_008438949.1\|	1.6e-07	52.63	PREDICTED: uncharacterized protein LOC103483891 isoform X1 [Cucumis melo]	[more]
gi\|449433435\|ref\|XP_004134503.1\|	4.7e-07	43.56	PREDICTED: uncharacterized protein LOC101215087 isoform X2 [Cucumis sativus]	[more]
gi\|778679070\|ref\|XP_011651084.1\|	4.7e-07	43.56	PREDICTED: uncharacterized protein LOC101215087 isoform X1 [Cucumis sativus]	[more]
gi\|659076946\|ref\|XP_008438950.1\|	4.7e-07	70.83	PREDICTED: uncharacterized protein LOC103483891 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G016220.1	CmoCh14G016220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G016220	Lsi05G015900	Bottle gourd (USVL1VR-Ls)	cmolsiB238
CmoCh14G016220	Cp4.1LG03g11810	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G016220	MELO3C006713.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G016220	CsaV3_3G015150	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G016220	Cla97C05G088140	Watermelon (97103) v2	cmowmbB243
CmoCh14G016220	Bhi01G000778	Wax gourd	cmowgoB0317
CmoCh14G016220	CsGy3G015070	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G016220	Carg23736	Silver-seed gourd	carcmoB1273
CmoCh14G016220	Carg19623	Silver-seed gourd	carcmoB0388

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G016220	CmoCh06G015580	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G016220	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G016220	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G016220	Melon (DHL92) v3.5.1	cmomeB200
CmoCh14G016220	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G016220	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G016220	Watermelon (Charleston Gray)	cmowcgB222
CmoCh14G016220	Watermelon (97103) v1	cmowmB231
CmoCh14G016220	Watermelon (97103) v1	cmowmB239
CmoCh14G016220	Cucurbita pepo (Zucchini)	cmocpeB225
CmoCh14G016220	Cucurbita pepo (Zucchini)	cmocpeB233
CmoCh14G016220	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G016220	Bottle gourd (USVL1VR-Ls)	cmolsiB213
CmoCh14G016220	Melon (DHL92) v3.6.1	cmomedB225
CmoCh14G016220	Silver-seed gourd	carcmoB0096
CmoCh14G016220	Silver-seed gourd	carcmoB0957
CmoCh14G016220	Watermelon (97103) v2	cmowmbB246
CmoCh14G016220	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G016220	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G016220	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G016220	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G016220	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G016220	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G016220	Cucurbita maxima (Rimu)	cmacmoB883