CmoCh14G005590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G005590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 23
Location	Cmo_Chr14 : 2835912 .. 2836864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCTCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCAATAGCCTTTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGGTTTGTGCAAAATTCCTTCTCACCTCTCAACCTTCCTTACGTGTTCTGTTTTCTATTTGCTTCCCATGAAAATCATGCCGATTCGGTAGAATAACTATGCGTTTGATTTTTCTTGAGTTTTAGTTTGGTTACTATTCTTCGTCTTGCTTTTAATTTTGTTTTCATCGAGTATCATTCTGGTTCAATGTTGCTCTCTGGATCTAAACCGACTATTATTTTTAGAGGAATCGATGATGTTGGTAAGAACTGTTTTGTGCATTCTCAAATGCAAATTTTTCATAGAATTGTCAACATTTTCATTGACGAGTTCGAGACAGATCTTGAAAAATCATCCGAAACTCAGTATCTTGTACGTCGGAGTTCATCTGTTAATTTTTGCTGAGAATTTCAATGTCTTCCTTCCTTCCTTCCTCCCTCCCCTCGATTTGAAGTTTTCTTTTCTTTTTCACACCAGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

mRNA sequence

AAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCTCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCAATAGCCTTTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Coding sequence (CDS)

ATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Homology

[Close]

BLAST of CmoCh14G005590 vs. TrEMBL
Match: A0A0A0LBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 93/116 (80.17%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDV 70
           D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]

BLAST of CmoCh14G005590 vs. TrEMBL
Match: A0A151SB39_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026080 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 21  EKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGARD 80
           +K V ++ + S QDV    ++ N  K    ++I   G+ +MEAS++ADDV+RAGGFGARD
Sbjct: 38  DKGVLKNFTRSSQDV--TETKINCPKGTRPEEIDASGDVNMEASITADDVIRAGGFGARD 97

Query: 81  DIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           DI SFLPVASDSTDFEA+IR AR YE PQG++SRPGLGW +ATK E
Sbjct: 98  DISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTDATKRE 141

[Close]

BLAST of CmoCh14G005590 vs. TrEMBL
Match: A0A0B2PDJ7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 1


Query: 16  PSVMVEKEVTESVSSSPQDVQTNR------SRENVMKTEPSQQIGIDGEASMEASMSADD 75
           P + V+K V ++ + S  DV   +        EN  K    ++I   G+ +MEAS++ DD
Sbjct: 28  PEIGVDKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 87

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+IR AR YE PQG++SRPGLGW  ATK E
Sbjct: 88  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 144

[Close]

BLAST of CmoCh14G005590 vs. TrEMBL
Match: I1JN99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G133400 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 1


Query: 16  PSVMVEKEVTESVSSSPQDVQTNR------SRENVMKTEPSQQIGIDGEASMEASMSADD 75
           P + V+K V ++ + S  DV   +        EN  K    ++I   G+ +MEAS++ DD
Sbjct: 28  PEIGVDKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 87

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+IR AR YE PQG++SRPGLGW  ATK E
Sbjct: 88  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 144

[Close]

BLAST of CmoCh14G005590 vs. TrEMBL
Match: F6HS73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0252g00050 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 38  NRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEA 97
           ++S EN+++   ++ +   GE +MEAS++ DDV+RAGGFGARDDI SFLPVASDSTDFEA
Sbjct: 35  SKSGENIVQGGANEDMDTSGEVNMEASITPDDVIRAGGFGARDDISSFLPVASDSTDFEA 94

Query: 98  TIRSARAYEGPQGEISRPGLGWKEATKT 126
           ++R AR YE PQG+I RPGLGW E TK+
Sbjct: 95  SLRDARDYEEPQGDIYRPGLGWTETTKS 122

[Close]

BLAST of CmoCh14G005590 vs. TAIR10
Match: AT5G04000.2 (AT5G04000.2 unknown protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-21
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 57  GEASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPG 116
           GE +MEAS+SA+DV+RAGGFGA+DDIGSFLPVASDSTDFE +IRSAR YE  Q E+ RPG
Sbjct: 53  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 112

Query: 117 LGW 120
           LG+
Sbjct: 113 LGY 115

[Close]

BLAST of CmoCh14G005590 vs. NCBI nr
Match: gi|659085272|ref|XP_008443333.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS 60
           ME+HPTSSL DER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +
Sbjct: 41  MELHPTSSLPDERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEIN 100

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWK
Sbjct: 101 MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 160

Query: 121 EATKTE 127
           EATKTE
Sbjct: 161 EATKTE 166

[Close]

BLAST of CmoCh14G005590 vs. NCBI nr
Match: gi|449437781|ref|XP_004136669.1| (PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 9.4e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 1


Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS 60
           ME+H TSSL D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +
Sbjct: 1   MELHRTSSLPDKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEIN 60

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWK
Sbjct: 61  MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 120

Query: 121 EATKTE 127
           EATKTE
Sbjct: 121 EATKTE 126

[Close]

BLAST of CmoCh14G005590 vs. NCBI nr
Match: gi|659085274|ref|XP_008443334.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1


Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDV 70
           DER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +MEASMSADDV
Sbjct: 7   DERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]

BLAST of CmoCh14G005590 vs. NCBI nr
Match: gi|659085276|ref|XP_008443335.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-43
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 1


Query: 12  EREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVL 71
           ER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +MEASMSADDVL
Sbjct: 3   ERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDVL 62

Query: 72  RAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 63  RAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 117

[Close]

BLAST of CmoCh14G005590 vs. NCBI nr
Match: gi|700204372|gb|KGN59505.1| (hypothetical protein Csa_3G823040 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.8e-42
Identity = 93/116 (80.17%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDV 70
           D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

The following BLAST results are available for this feature:

BLAST of CmoCh14G005590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G005590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBZ5_CUCSA	3.4e-42	80.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1	[more]
A0A151SB39_CAJCA	1.2e-23	59.43	Uncharacterized protein OS=Cajanus cajan GN=KK1_026080 PE=4 SV=1	[more]
A0A0B2PDJ7_GLYSO	1.0e-22	54.70	Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1	[more]
I1JN99_SOYBN	1.0e-22	54.70	Uncharacterized protein OS=Glycine max GN=GLYMA_03G133400 PE=4 SV=1	[more]
F6HS73_VITVI	1.3e-22	62.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0252g00050 PE=4 SV=...	[more]

BLAST of CmoCh14G005590 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04000.2	2.9e-21	76.19	unknown protein	[more]

BLAST of CmoCh14G005590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085272\|ref\|XP_008443333.1\|	2.0e-48	82.54	PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo]	[more]
gi\|449437781\|ref\|XP_004136669.1\|	9.4e-46	79.37	PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus]	[more]
gi\|659085274\|ref\|XP_008443334.1\|	1.1e-43	82.76	PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo]	[more]
gi\|659085276\|ref\|XP_008443335.1\|	4.4e-43	82.61	PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo]	[more]
gi\|700204372\|gb\|KGN59505.1\|	4.8e-42	80.17	hypothetical protein Csa_3G823040 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005590.1	CmoCh14G005590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37250	FAMILY NOT NAMED	coord: 1..126 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G005590	Cla002933	Watermelon (97103) v1	cmowmB214
CmoCh14G005590	Csa3G823040	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G005590	MELO3C009814	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G005590	ClCG10G015610	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G005590	CSPI03G38400	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G005590	Lsi03G015430	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G005590	MELO3C009814.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G005590	CsaV3_3G040800	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G005590	Cla97C10G198520	Watermelon (97103) v2	cmowmbB230
CmoCh14G005590	Bhi11G002435	Wax gourd	cmowgoB0292
CmoCh14G005590	Carg09819	Silver-seed gourd	carcmoB0592

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G005590	Wax gourd	cmowgoB0281
CmoCh14G005590	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh14G005590	Cucumber (Gy14) v1	cgycmoB0926
CmoCh14G005590	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G005590	Cucurbita maxima (Rimu)	cmacmoB802
CmoCh14G005590	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G005590	Cucumber (Gy14) v2	cgybcmoB279