ClCG10G015610 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G015610
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr10 : 30151229 .. 30152183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCCTCCAGCGCCCTCCACAAAGGATCCAAGCGGTGGTACGGCCATGAGAGATCGATAGCTCTGCTATGGAACTTCATCGGAGCTCTTCACTTCAAGGTCTGTGGAAGATTCCTTCTCACCTCCCGCGTTTTGCTTCCATTGAGAAAGCATGCTAATTCTGTTGAAGATCAACGCGTTTGGCTTGTTTTAGTTCTCATTTTAATTTTTGTTCTCAACAAGTACCTTTCTGGTTCAATGTTGCGTCTCTGGATCTAATCCACCTAGTCTTTTTTAAAGGATTCTATGATGTAGGAAGGAATTGGTTTGTGGCTTTGTGCGTTGTCAAATGCAAATTTTTCCTAGAATTGTCAACATTTTCGTTGAAGAGTTCAAGAACGATCTAGGAACATCATCACAACTTCAGTATCTTGTACCTCATGATTTATCTGTTGATTTTTTGCTCTTCTTTTTTTACACCAGATAAGAGAGAAGATCCTTCTGTAGTAGTTGAGAAAGGGGTTACAGAATCAGTTTCAAGCTCACCAAAAGATGTGCAAACCAAGAGAGGTTGGGAAAATATCGTGAAGGCTGAACCTACGCAACAGATTTATATGGCTGGGGAAATCAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCTCAATGCTCGAGACTATGAAAGTCCGCAGGGGGAAATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAGTTCTGACTTTGAGCATTTTGTTTGTGTCCAAGTTCAGTCATTTGTAAGTATGGTTTGTTTACTAGGTCTGTACAGGATTATGTTTTGTGACGTTAGGGAGATGCATTAGTTTGTTGTATCTTTGAATCAATATAGATCAGGAC

mRNA sequence

GTTGCCTCCAGCGCCCTCCACAAAGGATCCAAGCGGTGGTACGGCCATGAGAGATCGATAGCTCTGCTATGGAACTTCATCGGAGCTCTTCACTTCAAGATAAGAGAGAAGATCCTTCTGTAGTAGTTGAGAAAGGGGTTACAGAATCAGTTTCAAGCTCACCAAAAGATGTGCAAACCAAGAGAGGTTGGGAAAATATCGTGAAGGCTGAACCTACGCAACAGATTTATATGGCTGGGGAAATCAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCTCAATGCTCGAGACTATGAAAGTCCGCAGGGGGAAATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAGTTCTGACTTTGAGCATTTTGTTTGTGTCCAAGTTCAGTCATTTGTAAGTATGGTTTGTTTACTAGGTCTGTACAGGATTATGTTTTGTGACGTTAGGGAGATGCATTAGTTTGTTGTATCTTTGAATCAATATAGATCAGGAC

Coding sequence (CDS)

ATGGAACTTCATCGGAGCTCTTCACTTCAAGATAAGAGAGAAGATCCTTCTGTAGTAGTTGAGAAAGGGGTTACAGAATCAGTTTCAAGCTCACCAAAAGATGTGCAAACCAAGAGAGGTTGGGAAAATATCGTGAAGGCTGAACCTACGCAACAGATTTATATGGCTGGGGAAATCAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCTCAATGCTCGAGACTATGAAAGTCCGCAGGGGGAAATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Protein sequence

MELHRSSSLQDKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEISMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE

Homology

[Close]

BLAST of ClCG10G015610 vs. TrEMBL
Match: A0A0A0LBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-49
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1


Query: 11  DKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEISMEASMSADDV 70
           DKR+D SV+VEK V ESVSS PKDVQT RG EN+VKAEPTQ++ MAGEI+MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]

BLAST of ClCG10G015610 vs. TrEMBL
Match: A0A0B2PDJ7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-28
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 16  PSVVVEKGVTESVSSSPKDV-QTK-----RGWENIVKAEPTQQIYMAGEISMEASMSADD 75
           P + V+KGV ++ + S  DV +TK     +G EN  K    ++I  +G+++MEAS++ DD
Sbjct: 28  PEIGVDKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 87

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+I +ARDYE PQG++SRPGLGW  ATK E
Sbjct: 88  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 144

[Close]

BLAST of ClCG10G015610 vs. TrEMBL
Match: I1JN99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G133400 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-28
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 16  PSVVVEKGVTESVSSSPKDV-QTK-----RGWENIVKAEPTQQIYMAGEISMEASMSADD 75
           P + V+KGV ++ + S  DV +TK     +G EN  K    ++I  +G+++MEAS++ DD
Sbjct: 28  PEIGVDKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 87

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+I +ARDYE PQG++SRPGLGW  ATK E
Sbjct: 88  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 144

[Close]

BLAST of ClCG10G015610 vs. TrEMBL
Match: C6SVI5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G135200 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 16  PSVVVEKGVTESVSSSPKDV-QTK-----RGWENIVKAEPTQQIYMAGEISMEASMSADD 75
           P + V KGV ++ + S  DV +TK     +G EN  K    ++I  +G+++MEAS++ DD
Sbjct: 26  PEIGVGKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 85

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+I +ARDYE PQG++SRPGLGW  ATK E
Sbjct: 86  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 142

[Close]

BLAST of ClCG10G015610 vs. TrEMBL
Match: A0A0B2Q0U3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024065 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.8e-27
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 16  PSVVVEKGVTESVSSSPKDV-QTK-----RGWENIVKAEPTQQIYMAGEISMEASMSADD 75
           P + V KGV ++ + S  +V +TK     +G EN  K    ++I  +G+++MEAS++ DD
Sbjct: 26  PEIGVGKGVLKNFTRSSGNVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 85

Query: 76  VLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           V+RAGGFGARDDI SFLPVASDSTDFEA+I +ARDYE PQG++SRPGLGW  ATK E
Sbjct: 86  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 142

[Close]

BLAST of ClCG10G015610 vs. TAIR10
Match: AT5G04000.2 (AT5G04000.2 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 57  GEISMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPG 116
           GE++MEAS+SA+DV+RAGGFGA+DDIGSFLPVASDSTDFE +I +ARDYE  Q E+ RPG
Sbjct: 53  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 112

Query: 117 LGW 120
           LG+
Sbjct: 113 LGY 115

[Close]

BLAST of ClCG10G015610 vs. NCBI nr
Match: gi|449437781|ref|XP_004136669.1| (PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 109/126 (86.51%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 1   MELHRSSSLQDKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEIS 60
           MELHR+SSL DKR+D SV+VEK V ESVSS PKDVQT RG EN+VKAEPTQ++ MAGEI+
Sbjct: 1   MELHRTSSLPDKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEIN 60

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWK
Sbjct: 61  MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 120

Query: 121 EATKTE 127
           EATKTE
Sbjct: 121 EATKTE 126

[Close]

BLAST of ClCG10G015610 vs. NCBI nr
Match: gi|659085272|ref|XP_008443333.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 108/126 (85.71%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 1   MELHRSSSLQDKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEIS 60
           MELH +SSL D+R+D SV+VEK VTESVSS PKD+QT RG EN+VKAEPT+QI MAGEI+
Sbjct: 41  MELHPTSSLPDERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEIN 100

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWK
Sbjct: 101 MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 160

Query: 121 EATKTE 127
           EATKTE
Sbjct: 161 EATKTE 166

[Close]

BLAST of ClCG10G015610 vs. NCBI nr
Match: gi|700204372|gb|KGN59505.1| (hypothetical protein Csa_3G823040 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 4.1e-49
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1


Query: 11  DKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEISMEASMSADDV 70
           DKR+D SV+VEK V ESVSS PKDVQT RG EN+VKAEPTQ++ MAGEI+MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]

BLAST of ClCG10G015610 vs. NCBI nr
Match: gi|659085274|ref|XP_008443334.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 6.9e-49
Identity = 101/116 (87.07%), Postives = 109/116 (93.97%), Query Frame = 1


Query: 11  DKREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEISMEASMSADDV 70
           D+R+D SV+VEK VTESVSS PKD+QT RG EN+VKAEPT+QI MAGEI+MEASMSADDV
Sbjct: 7   DERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDV 66

Query: 71  LRAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           LRAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]

BLAST of ClCG10G015610 vs. NCBI nr
Match: gi|659085276|ref|XP_008443335.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.4e-48
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 12  KREDPSVVVEKGVTESVSSSPKDVQTKRGWENIVKAEPTQQIYMAGEISMEASMSADDVL 71
           +R+D SV+VEK VTESVSS PKD+QT RG EN+VKAEPT+QI MAGEI+MEASMSADDVL
Sbjct: 3   ERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDVL 62

Query: 72  RAGGFGARDDIGSFLPVASDSTDFEATILNARDYESPQGEISRPGLGWKEATKTE 127
           RAGGFGARD+IGSFLPVASDSTDFEATILNARDYE PQGEISRPGLGWKEATKTE
Sbjct: 63  RAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 117

The following BLAST results are available for this feature:

BLAST of ClCG10G015610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBZ5_CUCSA	2.8e-49	87.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1	[more]
A0A0B2PDJ7_GLYSO	6.1e-28	58.12	Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1	[more]
I1JN99_SOYBN	6.1e-28	58.12	Uncharacterized protein OS=Glycine max GN=GLYMA_03G133400 PE=4 SV=1	[more]
C6SVI5_SOYBN	1.8e-27	58.12	Uncharacterized protein OS=Glycine max GN=GLYMA_19G135200 PE=2 SV=1	[more]
A0A0B2Q0U3_GLYSO	6.8e-27	57.26	Uncharacterized protein OS=Glycine soja GN=glysoja_024065 PE=4 SV=1	[more]

BLAST of ClCG10G015610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04000.2	3.4e-22	74.60	unknown protein	[more]

BLAST of ClCG10G015610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437781\|ref\|XP_004136669.1\|	1.2e-53	86.51	PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus]	[more]
gi\|659085272\|ref\|XP_008443333.1\|	1.4e-52	85.71	PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo]	[more]
gi\|700204372\|gb\|KGN59505.1\|	4.1e-49	87.07	hypothetical protein Csa_3G823040 [Cucumis sativus]	[more]
gi\|659085274\|ref\|XP_008443334.1\|	6.9e-49	87.07	PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo]	[more]
gi\|659085276\|ref\|XP_008443335.1\|	3.4e-48	86.96	PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G015610.1	ClCG10G015610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37250	FAMILY NOT NAMED	coord: 39..126 score: 3.7
None	No IPR available	PANTHER	PTHR37250:SF1	SUBFAMILY NOT NAMED	coord: 39..126 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G015610	Csa3G823040	Cucumber (Chinese Long) v2	cuwcgB194
ClCG10G015610	MELO3C009814	Melon (DHL92) v3.5.1	mewcgB315
ClCG10G015610	Cla002933	Watermelon (97103) v1	wcgwmB051
ClCG10G015610	Cla97C10G198520	Watermelon (97103) v2	wcgwmbB038
ClCG10G015610	Bhi11G002435	Wax gourd	wcgwgoB087
ClCG10G015610	CSPI03G38400	Wild cucumber (PI 183967)	cpiwcgB195
ClCG10G015610	CmoCh14G005590	Cucurbita moschata (Rifu)	cmowcgB207
ClCG10G015610	Lsi03G015430	Bottle gourd (USVL1VR-Ls)	lsiwcgB219
ClCG10G015610	MELO3C009814.2	Melon (DHL92) v3.6.1	medwcgB309
ClCG10G015610	Carg09819	Silver-seed gourd	carwcgB0426
ClCG10G015610	CsaV3_3G040800	Cucumber (Chinese Long) v3	cucwcgB199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G015610	Cucurbita maxima (Rimu)	cmawcgB222
ClCG10G015610	Cucurbita maxima (Rimu)	cmawcgB723
ClCG10G015610	Cucurbita moschata (Rifu)	cmowcgB726
ClCG10G015610	Cucurbita pepo (Zucchini)	cpewcgB546
ClCG10G015610	Cucumber (Gy14) v2	cgybwcgB179
ClCG10G015610	Silver-seed gourd	carwcgB0311
ClCG10G015610	Wax gourd	wcgwgoB094
ClCG10G015610	Cucumber (Gy14) v1	cgywcgB579