CmoCh14G001820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G001820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA helicase (3.6.4.12)
LocationCmo_Chr14 : 831536 .. 832337 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCGGAAGACTTGCGATCAACCTGGATTTTACCTAATGCTAAAGGAAAATCCTAAAGTTGTTCTCAAATGTATGAGTGCTGCAATTCAACAGGTAAACACAAATTATTGCGAGAATTTCATTCTCTATTTATATACTATAAAATACTTTCAGAGTTTCAGCTTAGGATGCTTAACTCGTCTTTAAAGCAGGTAAGGAGGACCGAATGGATGCACAATTTAGAAGACGTCACGAAAATCCTAGTTCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGATGAACTTGAAGGCGTCATATATTGGTACTTGTTAGCTTCTAAAAAATTTATTATGAAGTCCGAAGTTTACTTCAAGGAAATGATGTAGGCTATATTATTTTGAGACATGACAGACAAGCTTGTATCAGTGCGCGTTATTTTTGTTAAAGTTAGCACTCTCAAGCCTTTGGTGATGCAAATGAACCTTGATTGTGCATAGTGTAAAAGCAATATTGATCGCATCTTTCCTGATGGTAAGGTTTCACCTCCATCATTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGAACTAGTGCTGAAGCAACCACTCTCAAAAAATACGGTAACTTCTAAATGCTGAATATGCTCTCAATTCATTTTTAGTTTCATTAATTACACCTTCTTCTTGAGTGTATTTTCCGTCATTTTCCTTCTACTGTAAATATTAGGTTCTTCTTAAATCTTTCCAGGCTGTAAGAACTCACTAAATCTGATGACCATGAAGAAGTCGGGGTGCCTCGAACTGTAG

mRNA sequence

TCCCGGAAGACTTGCGATCAACCTGGATTTTACCTAATGCTAAAGGAAAATCCTAAAGTTGTTCTCAAATGTATGAGTGCTGCAATTCAACAGGTAAGGAGGACCGAATGGATGCACAATTTAGAAGACGTCACGAAAATCCTAGTTCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGATGAACTTGAAGGCGTCATATATTGGTTTCACCTCCATCATTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGAACTAGTGCTGAAGCAACCACTCTCAAAAAATACGGCTGTAAGAACTCACTAAATCTGATGACCATGAAGAAGTCGGGGTGCCTCGAACTGTAG

Coding sequence (CDS)

ATGCTAAAGGAAAATCCTAAAGTTGTTCTCAAATGTATGAGTGCTGCAATTCAACAGGTAAGGAGGACCGAATGGATGCACAATTTAGAAGACGTCACGAAAATCCTAGTTCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGATGAACTTGAAGGCGTCATATATTGGTTTCACCTCCATCATTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGAACTAGTGCTGAAGCAACCACTCTCAAAAAATACGGCTGTAAGAACTCACTAAATCTGATGACCATGAAGAAGTCGGGGTGCCTCGAACTGTAG
Homology
[Close]
BLAST of CmoCh14G001820 vs. Swiss-Prot
Match: MCM8_ARATH (Probable DNA helicase MCM8 OS=Arabidopsis thaliana GN=MCM8 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHN-LEDVTKILVRLHNYSESMLALMNLKASYIG-- 61
           L++NPK V+ CM+AA+ +V   +W  N  E+V KI VRLHNY ES ++L NL+A+YIG  
Sbjct: 97  LEDNPKGVIPCMNAAVHKVLFDQWETNEFENVMKINVRLHNYPESSISLKNLRAAYIGKL 156

Query: 62  ----------------------------------FTS------IICELDGCKSKTFNPIR 89
                                             FT       + C+  GCKSKTF PIR
Sbjct: 157 VTVHGTVVKVSTVKPLVTQMAFDCGKCKTGITREFTDGKFSPPLKCDSHGCKSKTFTPIR 216

[Close]
BLAST of CmoCh14G001820 vs. TrEMBL
Match: A0A0A0LDE1_CUCSA (DNA helicase OS=Cucumis sativus GN=Csa_3G736810 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLE VTKILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEYVTKILVRLHNYSESMLALKNLKAAYI 138

[Close]
BLAST of CmoCh14G001820 vs. TrEMBL
Match: A0A0D2QBN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYIGFTS 61
           +++ PK+ L CMSAAI QV        LE+  KI +RLHNY ESM  L NLKA+YI    
Sbjct: 90  MEDKPKIALSCMSAAIHQVLLNNQDFYLEEGKKINIRLHNYPESMTVLKNLKAAYIA--- 149

Query: 62  IICELDGCKSKTFNPIRTSAEATTLKK 89
             C + GCKS+TF PIR+SA+A   +K
Sbjct: 150 --CTIHGCKSRTFKPIRSSAQAIDFQK 171

[Close]
BLAST of CmoCh14G001820 vs. TrEMBL
Match: A0A0D2NSJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYIGFTS 61
           +++ PK+ L CMSAAI QV        LE+  KI +RLHNY ESM  L NLKA+YI    
Sbjct: 90  MEDKPKIALSCMSAAIHQVLLNNQDFYLEEGKKINIRLHNYPESMTVLKNLKAAYIA--- 149

Query: 62  IICELDGCKSKTFNPIRTSAEATTLKK 89
             C + GCKS+TF PIR+SA+A   +K
Sbjct: 150 --CTIHGCKSRTFKPIRSSAQAIDFQK 171

[Close]
BLAST of CmoCh14G001820 vs. TrEMBL
Match: A0A0D2QBM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYIGFTS 61
           +++ PK+ L CMSAAI QV        LE+  KI +RLHNY ESM  L NLKA+YI    
Sbjct: 90  MEDKPKIALSCMSAAIHQVLLNNQDFYLEEGKKINIRLHNYPESMTVLKNLKAAYIA--- 149

Query: 62  IICELDGCKSKTFNPIRTSAEATTLKK 89
             C + GCKS+TF PIR+SA+A   +K
Sbjct: 150 --CTIHGCKSRTFKPIRSSAQAIDFQK 171

[Close]
BLAST of CmoCh14G001820 vs. TrEMBL
Match: A0A0D2QIP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYIGFTS 61
           +++ PK+ L CMSAAI QV        LE+  KI +RLHNY ESM  L NLKA+YI    
Sbjct: 90  MEDKPKIALSCMSAAIHQVLLNNQDFYLEEGKKINIRLHNYPESMTVLKNLKAAYIA--- 149

Query: 62  IICELDGCKSKTFNPIRTSAEATTLKK 89
             C + GCKS+TF PIR+SA+A   +K
Sbjct: 150 --CTIHGCKSRTFKPIRSSAQAIDFQK 171

[Close]
BLAST of CmoCh14G001820 vs. TAIR10
Match: AT3G09660.1 (AT3G09660.1 minichromosome maintenance 8)

HSP 1 Score: 70.5 bits (171), Expect = 7.3e-13
Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1 

Query: 2   LKENPKVVLKCMSAAIQQVRRTEWMHN-LEDVTKILVRLHNYSESMLALMNLKASYIG-- 61
           L++NPK V+ CM+AA+ +V   +W  N  E+V KI VRLHNY ES ++L NL+A+YIG  
Sbjct: 97  LEDNPKGVIPCMNAAVHKVLFDQWETNEFENVMKINVRLHNYPESSISLKNLRAAYIGKL 156

Query: 62  ----------------------------------FTS------IICELDGCKSKTFNPIR 89
                                             FT       + C+  GCKSKTF PIR
Sbjct: 157 VTVHGTVVKVSTVKPLVTQMAFDCGKCKTGITREFTDGKFSPPLKCDSHGCKSKTFTPIR 216

[Close]
BLAST of CmoCh14G001820 vs. NCBI nr
Match: gi|659083977|ref|XP_008442641.1| (PREDICTED: probable DNA helicase MCM8 isoform X1 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLEDV KILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEDVAKILVRLHNYSESMLALKNLKAAYI 138

[Close]
BLAST of CmoCh14G001820 vs. NCBI nr
Match: gi|659083981|ref|XP_008442643.1| (PREDICTED: probable DNA helicase MCM8 isoform X2 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLEDV KILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEDVAKILVRLHNYSESMLALKNLKAAYI 138

[Close]
BLAST of CmoCh14G001820 vs. NCBI nr
Match: gi|449440379|ref|XP_004137962.1| (PREDICTED: probable DNA helicase MCM8 isoform X1 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLE VTKILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEYVTKILVRLHNYSESMLALKNLKAAYI 138

[Close]
BLAST of CmoCh14G001820 vs. NCBI nr
Match: gi|778683747|ref|XP_011651937.1| (PREDICTED: probable DNA helicase MCM8 isoform X2 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLE VTKILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEYVTKILVRLHNYSESMLALKNLKAAYI 138

[Close]
BLAST of CmoCh14G001820 vs. NCBI nr
Match: gi|778683749|ref|XP_011651938.1| (PREDICTED: probable DNA helicase MCM8 isoform X3 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1   MLKENPKVVLKCMSAAIQQVRRTEWMHNLEDVTKILVRLHNYSESMLALMNLKASYI 58
           ML+ENPKV LKCMSAAI QV RT+W+HNLE VTKILVRLHNYSESMLAL NLKA+YI
Sbjct: 82  MLEENPKVALKCMSAAIHQVMRTKWVHNLEYVTKILVRLHNYSESMLALKNLKAAYI 138

The following BLAST results are available for this feature:
BLAST of CmoCh14G001820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MCM8_ARATH1.3e-1136.15Probable DNA helicase MCM8 OS=Arabidopsis thaliana GN=MCM8 PE=2 SV=2[more]
BLAST of CmoCh14G001820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDE1_CUCSA2.5e-1784.21DNA helicase OS=Cucumis sativus GN=Csa_3G736810 PE=3 SV=1[more]
A0A0D2QBN4_GOSRA2.8e-1350.57Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1[more]
A0A0D2NSJ8_GOSRA2.8e-1350.57Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1[more]
A0A0D2QBM9_GOSRA2.8e-1350.57Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1[more]
A0A0D2QIP7_GOSRA2.8e-1350.57Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248900 PE=3 SV=1[more]
BLAST of CmoCh14G001820 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G09660.17.3e-1336.15 minichromosome maintenance 8[more]
BLAST of CmoCh14G001820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083977|ref|XP_008442641.1|1.2e-1784.21PREDICTED: probable DNA helicase MCM8 isoform X1 [Cucumis melo][more]
gi|659083981|ref|XP_008442643.1|1.2e-1784.21PREDICTED: probable DNA helicase MCM8 isoform X2 [Cucumis melo][more]
gi|449440379|ref|XP_004137962.1|3.5e-1784.21PREDICTED: probable DNA helicase MCM8 isoform X1 [Cucumis sativus][more]
gi|778683747|ref|XP_011651937.1|3.5e-1784.21PREDICTED: probable DNA helicase MCM8 isoform X2 [Cucumis sativus][more]
gi|778683749|ref|XP_011651938.1|3.5e-1784.21PREDICTED: probable DNA helicase MCM8 isoform X3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006259 DNA metabolic process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G001820.1CmoCh14G001820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G001820CmaCh14G001930Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G001820Carg12596Silver-seed gourdcarcmoB1335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G001820Cucurbita moschata (Rifu)cmocmoB209
CmoCh14G001820Cucurbita moschata (Rifu)cmocmoB211
CmoCh14G001820Cucurbita moschata (Rifu)cmocmoB217
CmoCh14G001820Cucurbita moschata (Rifu)cmocmoB222
CmoCh14G001820Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G001820Cucumber (Gy14) v1cgycmoB0095
CmoCh14G001820Cucumber (Gy14) v1cgycmoB0837
CmoCh14G001820Cucurbita maxima (Rimu)cmacmoB544
CmoCh14G001820Cucurbita maxima (Rimu)cmacmoB640
CmoCh14G001820Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G001820Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G001820Wild cucumber (PI 183967)cmocpiB230
CmoCh14G001820Wild cucumber (PI 183967)cmocpiB254
CmoCh14G001820Cucumber (Chinese Long) v2cmocuB227
CmoCh14G001820Cucumber (Chinese Long) v2cmocuB249
CmoCh14G001820Melon (DHL92) v3.5.1cmomeB215
CmoCh14G001820Melon (DHL92) v3.5.1cmomeB223
CmoCh14G001820Watermelon (Charleston Gray)cmowcgB207
CmoCh14G001820Watermelon (Charleston Gray)cmowcgB211
CmoCh14G001820Watermelon (Charleston Gray)cmowcgB214
CmoCh14G001820Watermelon (97103) v1cmowmB214
CmoCh14G001820Watermelon (97103) v1cmowmB236
CmoCh14G001820Watermelon (97103) v1cmowmB237
CmoCh14G001820Cucurbita pepo (Zucchini)cmocpeB218
CmoCh14G001820Cucurbita pepo (Zucchini)cmocpeB229
CmoCh14G001820Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G001820Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G001820Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G001820Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G001820Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G001820Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G001820Cucumber (Gy14) v2cgybcmoB279
CmoCh14G001820Cucumber (Gy14) v2cgybcmoB458
CmoCh14G001820Cucumber (Gy14) v2cgybcmoB572
CmoCh14G001820Melon (DHL92) v3.6.1cmomedB222
CmoCh14G001820Melon (DHL92) v3.6.1cmomedB244
CmoCh14G001820Melon (DHL92) v3.6.1cmomedB252
CmoCh14G001820Silver-seed gourdcarcmoB0214
CmoCh14G001820Silver-seed gourdcarcmoB0740
CmoCh14G001820Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G001820Cucumber (Chinese Long) v3cmocucB0295
CmoCh14G001820Watermelon (97103) v2cmowmbB239
CmoCh14G001820Watermelon (97103) v2cmowmbB230
CmoCh14G001820Watermelon (97103) v2cmowmbB236
CmoCh14G001820Wax gourdcmowgoB0287
CmoCh14G001820Wax gourdcmowgoB0343