CmoCh14G001650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G001650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNAC transcription factor-like protein
LocationCmo_Chr14 : 742172 .. 746591 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGGAGCAAGGGTGTTTTGGAGACTAAGAAAAGTTTCCTGTCTCATAATTGATTTTTCCCCGCCTTCAAGATTGGTAGAACCAGACAACATCAACAACCTCGTGGAACTCGAATACATGTCATTTGTTTTAATTATTATTTTTTTAAAATAAACAATTACCGGGGTGTACATTCAACCGGATAACTCAGATCAACCCAACCCGAATTATAGGGTTGGATTGGATTAGATTAGCATTTCAAATAGGGTTGGGTTCATTTTTTTGAACCCGAACTGAATCGATTCGATTTCGAATTCATGGCGAAATCTCTAAGTTGATCCAACCAAATAAAAATATATAATATATTAAAAAATCCATTTGACATACTTAACTTTTTTTTTTAAAACATATTTAATTTTTTTTTATATTATTATATTATTATATTATTTTTAATTTATTCGTTTAGTTTTTTATATATATATATATATATATTTTAAAAATAACTTGATATTTCATATCATTTTTAAAACACTTTAGAATAAATGGACATATAACTATTAATACATTTTATACCTATAATAACATTAATTATAATTTATACTAGAGGTTCATAAATTATATATATAATATATAATTTTAAAATATATTCTAAATTATAATATATGATCTTAATATTTCATACCATTTTTAAAACACTTTAAAATAAATGAATATATAACTATTAATACATTTTATATATATAATAACATTAATTATGATTTATATTAAATATTATTTTAAAATATAACATATTCTAAATTATAATATATTTATTATCTATTTGGAGCAACACGGTAATAAAATTAGAATATAAAACAAAAAAGTAAAAAAAAATCTAATTTATGTATATTTGAAAAGGTAGTTAATTTTTAAAATTAAAATAATTTGAACCGTTAAATAAATTTTTTTCTCCCCTATTTTTTAAAATCTATAAATTAATTTCATTACCTTCATTTATTCATTCTTCATTTAGATCGGTGCAGCATTCCAGGAAGAGCCCAAAACCATCATTGATACCGTTCGAAGCCTATAAATTAATTTCATTCCCTTCATTTATTCATTTTCATTATTCAAGTCTGTGCAATTCAGCAGGAAGAGCCTAAAACCATCATCAATACCATTCAAATTCTCAAAAGGTTAGATCTCGAGTTTCAATTTTTTCATTATTTTAGAGTTATTTTTCAATTTGTAGATGTAAAGTTTAGAGGTATTTTTTTCGTTCGCTTTTCAGATAAATATCATTAATAATATTAGAGATCAAATAAATATCATCCCGTTTTATTGAAAATTAAATACATTAACAATTTTGATTCGGTATTTTATGGAAATAATAGAAATATGTTGAAATTTTTATAAGAATTTATTACATTAAATCTAAAGTTGTGTAGATCTTAAATATAAATTTATAATCTACTATATTTAAAAAAAAAAAATTCCACCAAAATTGAAATATATATACATCTTGTTTTTTTATCCTTCTCTGACAAAAAAATTTTAAATTCAAATTCAATTTTGGTTGCAGTTTTGATTCCTTTCATGGCAATGGATTCAAGCATGTTTCCGTTCGGCTACGACTTCGCTCCCACAGATGAAGAACTATTGATTTATTATTTGTTCCATAAGATTGTTGGAGACATCGTTCCGTCAATTTCGTTGCCTGTGATCGATATTTACTCCCATGAACCTGCTATGATATGGCAACAATGCGGAGGAATGGAGGATAAAGACATCTACTTTTTCACGACCCTAAAAAAGAAGAAATCTCGTATCATCAGGAAGGTCGGTCTTAACGGTGGCACTTGGAGTGGGGAGAGCAAAGGCCATAAAGTATTTTCTTCTGCTAACAATGCTCCCATCGGTACTATTAAACGTTTTCACTATGAGACTTCTGGAGGAGTGAATGCTAATGATGACGATTGTTCCTGGATAATGCATGAATACACACTTGATCCCACCGTCCTAACCAATGGGTTTGTACATGATTCGTATGTAGTTTGTCTGATTCGAAAAAGAATATTGAAAAAAGTAAGGAATACAGTCTCGTCAACCATACAAGCACCCTTTGTTTTTAATGGCCCTACAACAACACAAACAGATGCCCTTTACATGGATGGGGTCAATAAATGGTACGTATCATTTCTTATTTATCAAAATTATATATTTTTTAACTTGTTCATAAATATATATATTTTTTTTAATTTTTACAGTCCACCGGCACAAATGATAGAATCACATGATGATATAATGTTCACAAATGAGTTTGAGGAGCCACTAGAAGAATTAAATGCGGAACATTCTGATAATATAATGTTTGCAAATGAACTCGAGAACCAACCAGAAGAATCAAATGCGGAACATTCTGATCATATAATGTTTGCAAATGAGCTTGAGAACCAATTAGAAGAATTAAATGCGGAACATTCCGATGATATAATGTTCGCAAAAGAGATTGAGAATCAATTAGAAGAATTAAATGCGGAACATTACGATGATATAATGTCAGCAAATAAGTTTGAGAAGCAACCGGAAGAATTAAATGCGGAACATTGCCACATAGAAAAAGATTCCAGCAATGACTTTGAATGGTAGGTAACATTTTAATTTTAATTGATAACAAAAAAATAATTTAATTTTATAAGTATAATATTTTTTAAATAATGTTTTTTTTTTCTTTCTTCTTAATTTTCAACAGTCCACTCGAACAAATGATGAAATTAGATGATCAATCTTTTGAAAATACAATGTTGGTAAATGAGTTTGAGATGCAATGGGACGAGTTAAACCTAGAATTTCCAGACCTAGAAATAAATTCAAGTATTGACCATTCAAGGTAAGCGAGTTTTTTTTTTTTTTTTTTTTTTTGAGGAATAAGTTTTTGTTTTTCTAATTTTTTTTTTTCTTCCTAATTTTCAATAGTCAACCTGTACAAATAATGGAATTACACGATCAACTTTCAAGTGATGATATAATTTTCGCCAGCCAACTTGAGAATCAGCTGGAAGAATTAAACACAGATTTTCCAGTCCTAGAAAGTATTGACCATTCAAGGTAAGCCATATTTTGAATTTGTGAGTTTTCTTTTTCTTTAACGTATAAGTTTTTTTTTTTTTCTAAATATATTTTTTTTCTTCCTAATTTTCAATAGTCAACCTGTACCAACAATGGAACTACACTATCAATCTTCAAATGATGATACAATCCCAAATGAGTTTAATAAGCAACTGGCAACATTAAATACAGAATTTCCAGACATAGAAAAAAATTCAAGTAACGACCATGAATGGTAGGTGATATTTTCATTTTGATTGATAACCAAAAAAAAATATATCTCTCTATTTCAAAAATAATTTAATTTTGTATGGGTAAGTATTTATTTTTATTTTAACCATGTTGATGAACAATTATTTATTTTTTAAAATTTTGGTTTTAGTTCACCGGCTCAAATAATGGAATCCTATGTCCAATATTCAAACAATGATATGCTGGTTCCTGAAGGGAACGAAAAGGAACTTGAACAATGGAACATATTCAACAGAGAACAAAGTTCAAATTATAATCATCAATGGCATTAGGTAAGTTATCCAATTTATTCGTATTTAAATTATTTGTAAACATTTTAATTTATCATTATATTTATTTTTTCATTTATTAATTATTTTTATAAATTCATTATTTTGCAGATGTGATCGTGCTTCTGTTTCGAGCAAAGATGCATTCTCTCTTTTCATATTTTTATTATTTTTAGTTTAGATAAAGTGTAAAGATAATTATCATGGTGATAATTATCCCGTTTTTTTTTTCCAACTGTAATAAGAAAAAATATATCTATATATATAGATCTGATTTCATTCCCTAAATTTCAAAATATTTTATTTTTATTTAAGTTTTATTAGTCAATAAATGTTTTACCAGATTTGGAATCTCAGTAACACAAAGTTTATCCACTCAAGAGTTCATCACTTCGCAGTCTTTTTTTTTTTTTTTGAATTTGAATTTGAATTTGAAATGCATATGAATAATTGAGTTGAATTATTAAACCAAGCAAACAGAATATAATTTCTTTTCTTCTTTAATCTTTTTCGGTAAAGCCAAAAAAAATTAGGTAAAAAATTATAGAATGTTGAAAATTTCCATCAAGTATGAAGACCAGTATCAGGAAAGGGGAGGAAATGTTCTTCTCAAGTTATCGTCCAAAAGAATCCTAAGCTGCAATCACAGCTACTGATATTCTCCATTTTTTGCTTTTAACTTTTTTTTTTTTTTCTTTCACTAATATTATTTTAGGCTTTCAGTTTTGTTGTTGATTTCATCTTTTTCTAGGGTTCGTGAATTGAAAGTTGCAAAAAACTCAGAGGACAATAGAGAGGGATGGGAGAGAGATCAGAATGAGCTATGA

mRNA sequence

ATGATCGGAGGAGCAAGGGTGTTTTGGAGACTAAGAAAAGAAGAGCCTAAAACCATCATCAATACCATTCAAATTCTCAAAAGGAAGGTCGGTCTTAACGGTGGCACTTGGAGTGGGGAGAGCAAAGGCCATAAAGTATTTTCTTCTGCTAACAATGCTCCCATCGGTACTATTAAACGTTTTCACTATGAGACTTCTGGAGGAGTGAATGCTAATGATGACGATTGTTCCTGGATAATGCATGAATACACACTTGATCCCACCGTCCTAACCAATGGGGTTCGTGAATTGAAAGTTGCAAAAAACTCAGAGGACAATAGAGAGGGATGGGAGAGAGATCAGAATGAGCTATGA

Coding sequence (CDS)

ATGATCGGAGGAGCAAGGGTGTTTTGGAGACTAAGAAAAGAAGAGCCTAAAACCATCATCAATACCATTCAAATTCTCAAAAGGAAGGTCGGTCTTAACGGTGGCACTTGGAGTGGGGAGAGCAAAGGCCATAAAGTATTTTCTTCTGCTAACAATGCTCCCATCGGTACTATTAAACGTTTTCACTATGAGACTTCTGGAGGAGTGAATGCTAATGATGACGATTGTTCCTGGATAATGCATGAATACACACTTGATCCCACCGTCCTAACCAATGGGGTTCGTGAATTGAAAGTTGCAAAAAACTCAGAGGACAATAGAGAGGGATGGGAGAGAGATCAGAATGAGCTATGA
Homology
[Close]
BLAST of CmoCh14G001650 vs. TrEMBL
Match: A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-10
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYET----SGGVNANDDDCSWIMHEY 87
           RKVG NG TWSGESK  KVFS  NN  +G  KRFHYE      GG + N  + SWIM+EY
Sbjct: 71  RKVGPNGATWSGESKATKVFSH-NNTLVGDFKRFHYENPKMKKGGHHNN--NYSWIMYEY 130

Query: 88  TLDPTVLTNGV 95
           TL P ++  GV
Sbjct: 131 TLHPNLVPEGV 138

[Close]
BLAST of CmoCh14G001650 vs. TrEMBL
Match: A0A0A0L807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-08
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYET--SGGVNANDDDCSWIMHEYTL 87
           RKVG NG  WSGESK  KVFS  NN  +G  K FHYE         ++++ SWIM+EYTL
Sbjct: 80  RKVGPNGAIWSGESKATKVFSH-NNTLVGAFKLFHYENPKMKKDGHHNNNYSWIMYEYTL 139

Query: 88  DPTVLTNGV 95
            P ++  GV
Sbjct: 140 HPNLVPEGV 147

[Close]
BLAST of CmoCh14G001650 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSA-NNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLD 87
           RKVG NGGTWSGE+K  +VFSS  +N  +GT+KRF YE S       +DC+WIM+EYTL+
Sbjct: 78  RKVGSNGGTWSGENKPQQVFSSTIDNLLLGTMKRFRYEKS----QVKEDCTWIMYEYTLN 137

Query: 88  PTVLTNGV 95
           P ++  G+
Sbjct: 138 PFIVPEGL 141

[Close]
BLAST of CmoCh14G001650 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1 

Query: 8   FWRLRKEEPKTIINTIQILKRKVGLNGGTWSGESKGHKVFSSA-NNAPIGTIKRFHYETS 67
           F  L+K++ + I        RKVG NG TWS E++  +VFSS  ++  +G++KRFHY+  
Sbjct: 66  FTTLKKKKSRII--------RKVGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKP 125

Query: 68  GGVNAND-DDCSWIMHEYTLDPTVLTNGV 95
              +  D +DC+WIM+EYTLDP+++  G+
Sbjct: 126 KAKDCTDINDCTWIMYEYTLDPSIVPKGL 146

[Close]
BLAST of CmoCh14G001650 vs. NCBI nr
Match: gi|700210011|gb|KGN65107.1| (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-10
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYET----SGGVNANDDDCSWIMHEY 87
           RKVG NG TWSGESK  KVFS  NN  +G  KRFHYE      GG + N  + SWIM+EY
Sbjct: 71  RKVGPNGATWSGESKATKVFSH-NNTLVGDFKRFHYENPKMKKGGHHNN--NYSWIMYEY 130

Query: 88  TLDPTVLTNGV 95
           TL P ++  GV
Sbjct: 131 TLHPNLVPEGV 138

[Close]
BLAST of CmoCh14G001650 vs. NCBI nr
Match: gi|700201123|gb|KGN56256.1| (hypothetical protein Csa_3G110040 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-08
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYET--SGGVNANDDDCSWIMHEYTL 87
           RKVG NG  WSGESK  KVFS  NN  +G  K FHYE         ++++ SWIM+EYTL
Sbjct: 80  RKVGPNGAIWSGESKATKVFSH-NNTLVGAFKLFHYENPKMKKDGHHNNNYSWIMYEYTL 139

Query: 88  DPTVLTNGV 95
            P ++  GV
Sbjct: 140 HPNLVPEGV 147

[Close]
BLAST of CmoCh14G001650 vs. NCBI nr
Match: gi|694390517|ref|XP_009370826.1| (PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 31/65 (47.69%), Postives = 37/65 (56.92%), Query Frame = 1 

Query: 28  RKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLDP 87
           R VG  GGTW GE  G K+++S     IG  KRF Y   G    ND    WIMHE+ LDP
Sbjct: 91  RTVGTTGGTWKGEDAGKKIYASGIKHAIGFRKRFTYRNKGSPQ-ND---HWIMHEFHLDP 150

Query: 88  TVLTN 93
           ++L N
Sbjct: 151 SLLRN 151

The following BLAST results are available for this feature:
BLAST of CmoCh14G001650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G001650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWA5_CUCSA4.1e-1056.34Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1[more]
A0A0A0L807_CUCSA6.6e-0850.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1[more]
BLAST of CmoCh14G001650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G001650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664815|ref|XP_011660358.1|7.0e-1154.41PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus][more]
gi|659085728|ref|XP_008443570.1|1.6e-1041.57PREDICTED: NAC domain-containing protein 55-like [Cucumis melo][more]
gi|700210011|gb|KGN65107.1|5.9e-1056.34hypothetical protein Csa_1G224380 [Cucumis sativus][more]
gi|700201123|gb|KGN56256.1|9.4e-0850.72hypothetical protein Csa_3G110040 [Cucumis sativus][more]
gi|694390517|ref|XP_009370826.1|4.0e-0647.69PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G001650.1CmoCh14G001650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPFAMPF02365NAMcoord: 31..85
score: 2.
IPR003441NAC domainPROFILEPS51005NACcoord: 1..105
score: 9
IPR003441NAC domainunknownSSF101941NAC domaincoord: 28..92
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G001650CmaCh14G001770Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G001650Cp4.1LG03g02140Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G001650Carg12578Silver-seed gourdcarcmoB1335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G001650Melon (DHL92) v3.6.1cmomedB244
CmoCh14G001650Melon (DHL92) v3.6.1cmomedB269
CmoCh14G001650Silver-seed gourdcarcmoB0214
CmoCh14G001650Silver-seed gourdcarcmoB0417
CmoCh14G001650Silver-seed gourdcarcmoB0638
CmoCh14G001650Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G001650Cucumber (Chinese Long) v3cmocucB0295
CmoCh14G001650Watermelon (97103) v2cmowmbB239
CmoCh14G001650Watermelon (97103) v2cmowmbB230
CmoCh14G001650Watermelon (97103) v2cmowmbB236
CmoCh14G001650Wax gourdcmowgoB0287
CmoCh14G001650Wax gourdcmowgoB0340
CmoCh14G001650Cucurbita moschata (Rifu)cmocmoB209
CmoCh14G001650Cucurbita moschata (Rifu)cmocmoB211
CmoCh14G001650Cucurbita moschata (Rifu)cmocmoB216
CmoCh14G001650Cucurbita moschata (Rifu)cmocmoB222
CmoCh14G001650Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G001650Cucumber (Gy14) v1cgycmoB0095
CmoCh14G001650Cucumber (Gy14) v1cgycmoB0837
CmoCh14G001650Cucurbita maxima (Rimu)cmacmoB544
CmoCh14G001650Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G001650Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G001650Wild cucumber (PI 183967)cmocpiB230
CmoCh14G001650Wild cucumber (PI 183967)cmocpiB254
CmoCh14G001650Cucumber (Chinese Long) v2cmocuB227
CmoCh14G001650Cucumber (Chinese Long) v2cmocuB249
CmoCh14G001650Melon (DHL92) v3.5.1cmomeB215
CmoCh14G001650Melon (DHL92) v3.5.1cmomeB237
CmoCh14G001650Watermelon (Charleston Gray)cmowcgB207
CmoCh14G001650Watermelon (Charleston Gray)cmowcgB211
CmoCh14G001650Watermelon (Charleston Gray)cmowcgB214
CmoCh14G001650Watermelon (97103) v1cmowmB214
CmoCh14G001650Watermelon (97103) v1cmowmB236
CmoCh14G001650Watermelon (97103) v1cmowmB237
CmoCh14G001650Cucurbita pepo (Zucchini)cmocpeB229
CmoCh14G001650Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G001650Cucurbita pepo (Zucchini)cmocpeB253
CmoCh14G001650Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G001650Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G001650Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G001650Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G001650Bottle gourd (USVL1VR-Ls)cmolsiB232
CmoCh14G001650Cucumber (Gy14) v2cgybcmoB279
CmoCh14G001650Cucumber (Gy14) v2cgybcmoB458
CmoCh14G001650Cucumber (Gy14) v2cgybcmoB572