CmoCh14G001570 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G001570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 690055 .. 690973 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATGTTACGGATCAGATGATTTCCAGTTCTTCCTTTTACTGACCGATTTCAGGTTCTCATGTTCTGAACCTTTGTGTTCTATTCGTACTTTCGATTCGCACATTTTCCATTTTTTTGAAAAGTTTTCTTCGAGCTCTTGGCTCGCAAATCTGAGGTTTTGTTAGACCCTACGGAAAATTAGGGTTTCGAAGAGCATTTCAGTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGGTAATCTTAGTTAACATGGGGTTCTTTTAGCGCTTTTCGTGCTCTATTCGTATTCTTCAGCCTTCTCTTCTCCTCCTTGCTCTTGGTTCGTTCGAGATTTGGAATTCCTAGAGAAATTAGAGTTGTAAGGTAAGGATTTATTTGTTTTGATCTTGAGGTCTTTTAGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGTATTGTGCTATAATCTTTTTATATTCTTACTAAGAATTTTACAGGCATAA

mRNA sequence

ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGCATAA

Coding sequence (CDS)

ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGCATAA
Homology
[Close]
BLAST of CmoCh14G001570 vs. NCBI nr
Match: gi|778683597|ref|XP_011651908.1| (PREDICTED: uncharacterized protein LOC105434955 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
           MPS+ IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1   MPSLTIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]
BLAST of CmoCh14G001570 vs. NCBI nr
Match: gi|659083849|ref|XP_008442572.1| (PREDICTED: uncharacterized protein LOC103486406 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
           MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1   MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]
BLAST of CmoCh14G001570 vs. NCBI nr
Match: gi|731398951|ref|XP_010653446.1| (PREDICTED: uncharacterized protein LOC104880036 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 

Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
           MPSVPI L L P++PS+ SFHGGS SHRLKRLEKGDRR
Sbjct: 1   MPSVPIKLLLRPMIPSVMSFHGGSCSHRLKRLEKGDRR 38

[Close]
BLAST of CmoCh14G001570 vs. NCBI nr
Match: gi|645220707|ref|XP_008241435.1| (PREDICTED: uncharacterized protein LOC103339856 [Prunus mume])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 

Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
           MPSVPI L L PL+P+LTSFHGGS SHRLKR+EK DRR
Sbjct: 1   MPSVPIQLLLRPLVPNLTSFHGGSCSHRLKRIEKSDRR 38

[Close]
BLAST of CmoCh14G001570 vs. NCBI nr
Match: gi|657991043|ref|XP_008387738.1| (PREDICTED: uncharacterized protein LOC103450204 [Malus domestica])

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-07
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
           MPSVP  L L P +P+LTSFHGGS SHRLKRLEKGDRR
Sbjct: 1   MPSVPTHLLLRPSVPNLTSFHGGSCSHRLKRLEKGDRR 38

The following BLAST results are available for this feature:
BLAST of CmoCh14G001570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G001570 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh14G001570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G001570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778683597|ref|XP_011651908.1|1.9e-0989.47PREDICTED: uncharacterized protein LOC105434955 [Cucumis sativus][more]
gi|659083849|ref|XP_008442572.1|4.2e-0989.47PREDICTED: uncharacterized protein LOC103486406 [Cucumis melo][more]
gi|731398951|ref|XP_010653446.1|1.8e-0778.95PREDICTED: uncharacterized protein LOC104880036 [Vitis vinifera][more]
gi|645220707|ref|XP_008241435.1|1.8e-0778.95PREDICTED: uncharacterized protein LOC103339856 [Prunus mume][more]
gi|657991043|ref|XP_008387738.1|5.2e-0778.95PREDICTED: uncharacterized protein LOC103450204 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G001570.1CmoCh14G001570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G001570CmaCh14G001690Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G001570Cla97C10G204150Watermelon (97103) v2cmowmbB230
CmoCh14G001570Carg12570Silver-seed gourdcarcmoB1335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G001570Cucurbita pepo (Zucchini)cmocpeB229
CmoCh14G001570Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G001570Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G001570Cucurbita pepo (Zucchini)cmocpeB253
CmoCh14G001570Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G001570Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G001570Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G001570Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G001570Bottle gourd (USVL1VR-Ls)cmolsiB232
CmoCh14G001570Cucumber (Gy14) v2cgybcmoB279
CmoCh14G001570Cucumber (Gy14) v2cgybcmoB458
CmoCh14G001570Cucumber (Gy14) v2cgybcmoB572
CmoCh14G001570Cucumber (Gy14) v2cgybcmoB716
CmoCh14G001570Melon (DHL92) v3.6.1cmomedB226
CmoCh14G001570Melon (DHL92) v3.6.1cmomedB244
CmoCh14G001570Melon (DHL92) v3.6.1cmomedB269
CmoCh14G001570Silver-seed gourdcarcmoB0214
CmoCh14G001570Silver-seed gourdcarcmoB0417
CmoCh14G001570Silver-seed gourdcarcmoB0638
CmoCh14G001570Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G001570Cucumber (Chinese Long) v3cmocucB0295
CmoCh14G001570Cucumber (Chinese Long) v3cmocucB0307
CmoCh14G001570Watermelon (97103) v2cmowmbB239
CmoCh14G001570Watermelon (97103) v2cmowmbB236
CmoCh14G001570Wax gourdcmowgoB0287
CmoCh14G001570Wax gourdcmowgoB0340
CmoCh14G001570Cucurbita moschata (Rifu)cmocmoB209
CmoCh14G001570Cucurbita moschata (Rifu)cmocmoB211
CmoCh14G001570Cucurbita moschata (Rifu)cmocmoB216
CmoCh14G001570Cucurbita moschata (Rifu)cmocmoB222
CmoCh14G001570Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G001570Cucumber (Gy14) v1cgycmoB0095
CmoCh14G001570Cucumber (Gy14) v1cgycmoB0498
CmoCh14G001570Cucurbita maxima (Rimu)cmacmoB544
CmoCh14G001570Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G001570Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G001570Wild cucumber (PI 183967)cmocpiB230
CmoCh14G001570Wild cucumber (PI 183967)cmocpiB254
CmoCh14G001570Cucumber (Chinese Long) v2cmocuB227
CmoCh14G001570Cucumber (Chinese Long) v2cmocuB249
CmoCh14G001570Melon (DHL92) v3.5.1cmomeB215
CmoCh14G001570Melon (DHL92) v3.5.1cmomeB237
CmoCh14G001570Watermelon (Charleston Gray)cmowcgB207
CmoCh14G001570Watermelon (Charleston Gray)cmowcgB211
CmoCh14G001570Watermelon (Charleston Gray)cmowcgB214
CmoCh14G001570Watermelon (97103) v1cmowmB214
CmoCh14G001570Watermelon (97103) v1cmowmB236
CmoCh14G001570Watermelon (97103) v1cmowmB237