CmaCh14G001690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G001690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 687887 .. 688819 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTCAGAGAAGGAGGCCCAGCCCAATAGGAAAGTATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTCTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCCGCCGCTGCAACGCCGCTGATCTTTTGCAGCATGTTACGGATCAGATGATTTCCAGTTCTTCCTTTTACTGACCGATTTCAGGTTCTCATGTTCTGAACCTTTGTGTTCTATTCGTACTTTCGATTCGCACATTTTCCATTTTTTTGAAAAGTTTTCTTCGAGCTCTTGGCTCTCAAATCTGAGGTTTTGTTAGACCCTACGAAAAATTAGGGTTTCGAAGAGCATTTCAGTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGAGTGATCGGCGTGGTAATCTTAGTTAACATGGGGTTCTTTTAGCGCATTTCGTGCTCTATTCGTATTCTTCAGCCTTCTCTTCTCCTCCTTGCTCTTGGTTCGTTCGAGATTTGGAATTCCTAGAGAAATTAGAGTTGTAAGGTAAGGATTTATTTTTTTGATCTCGAGGTCTTTTAGCGGTTGAAGCCTCTGAGAAGCGAGCCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTTACTATTGTGCGAGGTATTGTGCTATAATCTTTTTATATTCTTACTAAGAAATTTACAGGCATAATAGCTTCATGTTTCTTTCTGAGCACCTGGATCGAGTTTCTTTTCGGGATTGTTTGA

mRNA sequence

ATGGGCTTTCAGAGAAGGAGGCCCAGCCCAATAGGAAAGTATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTCTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCCGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGAGTGATCGGCGTGCGGTTGAAGCCTCTGAGAAGCGAGCCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTTACTATTGTGCGAGGCATAATAGCTTCATGTTTCTTTCTGAGCACCTGGATCGAGTTTCTTTTCGGGATTGTTTGA

Coding sequence (CDS)

ATGGGCTTTCAGAGAAGGAGGCCCAGCCCAATAGGAAAGTATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTCTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCCGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGAGTGATCGGCGTGCGGTTGAAGCCTCTGAGAAGCGAGCCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTTACTATTGTGCGAGGCATAATAGCTTCATGTTTCTTTCTGAGCACCTGGATCGAGTTTCTTTTCGGGATTGTTTGA

Protein sequence

MGFQRRRPSPIGKYWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRRAVEASEKRATGNWLLVERGFAILTIVRGIIASCFFLSTWIEFLFGIV
Homology
[Close]
BLAST of CmaCh14G001690 vs. NCBI nr
Match: gi|778683597|ref|XP_011651908.1| (PREDICTED: uncharacterized protein LOC105434955 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 90  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRR 128
           MPS+ IDL+L PLLPSLTSFHGGSSSHRLKRLEK DRR
Sbjct: 1   MPSLTIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]
BLAST of CmaCh14G001690 vs. NCBI nr
Match: gi|659083849|ref|XP_008442572.1| (PREDICTED: uncharacterized protein LOC103486406 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 90  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRR 128
           MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEK DRR
Sbjct: 1   MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]
BLAST of CmaCh14G001690 vs. NCBI nr
Match: gi|645220707|ref|XP_008241435.1| (PREDICTED: uncharacterized protein LOC103339856 [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 90  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRR 128
           MPSVPI L L PL+P+LTSFHGGS SHRLKR+EKSDRR
Sbjct: 1   MPSVPIQLLLRPLVPNLTSFHGGSCSHRLKRIEKSDRR 38

[Close]
BLAST of CmaCh14G001690 vs. NCBI nr
Match: gi|731398951|ref|XP_010653446.1| (PREDICTED: uncharacterized protein LOC104880036 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 90  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRR 128
           MPSVPI L L P++PS+ SFHGGS SHRLKRLEK DRR
Sbjct: 1   MPSVPIKLLLRPMIPSVMSFHGGSCSHRLKRLEKGDRR 38

[Close]
BLAST of CmaCh14G001690 vs. NCBI nr
Match: gi|657991043|ref|XP_008387738.1| (PREDICTED: uncharacterized protein LOC103450204 [Malus domestica])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 90  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKSDRR 128
           MPSVP  L L P +P+LTSFHGGS SHRLKRLEK DRR
Sbjct: 1   MPSVPTHLLLRPSVPNLTSFHGGSCSHRLKRLEKGDRR 38

The following BLAST results are available for this feature:
BLAST of CmaCh14G001690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G001690 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh14G001690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G001690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778683597|ref|XP_011651908.1|1.3e-0886.84PREDICTED: uncharacterized protein LOC105434955 [Cucumis sativus][more]
gi|659083849|ref|XP_008442572.1|2.8e-0886.84PREDICTED: uncharacterized protein LOC103486406 [Cucumis melo][more]
gi|645220707|ref|XP_008241435.1|8.2e-0881.58PREDICTED: uncharacterized protein LOC103339856 [Prunus mume][more]
gi|731398951|ref|XP_010653446.1|1.2e-0676.32PREDICTED: uncharacterized protein LOC104880036 [Vitis vinifera][more]
gi|657991043|ref|XP_008387738.1|3.4e-0676.32PREDICTED: uncharacterized protein LOC103450204 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G001690.1CmaCh14G001690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G001690CmoCh14G001570Cucurbita moschata (Rifu)cmacmoB244
CmaCh14G001690Cla97C10G204150Watermelon (97103) v2cmawmbB249
CmaCh14G001690Carg12570Silver-seed gourdcarcmaB1380
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh14G001690CmaCh06G003180Cucurbita maxima (Rimu)cmacmaB278
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G001690Wax gourdcmawgoB0298
CmaCh14G001690Wax gourdcmawgoB0351
CmaCh14G001690Wax gourdcmawgoB0353
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB208
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB261
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB264
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB268
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB272
CmaCh14G001690Cucurbita maxima (Rimu)cmacmaB291
CmaCh14G001690Cucumber (Gy14) v1cgycmaB0100
CmaCh14G001690Cucumber (Gy14) v1cgycmaB0496
CmaCh14G001690Cucurbita moschata (Rifu)cmacmoB262
CmaCh14G001690Cucurbita moschata (Rifu)cmacmoB268
CmaCh14G001690Cucurbita moschata (Rifu)cmacmoB275
CmaCh14G001690Wild cucumber (PI 183967)cmacpiB242
CmaCh14G001690Wild cucumber (PI 183967)cmacpiB266
CmaCh14G001690Cucumber (Chinese Long) v2cmacuB240
CmaCh14G001690Cucumber (Chinese Long) v2cmacuB264
CmaCh14G001690Melon (DHL92) v3.5.1cmameB229
CmaCh14G001690Melon (DHL92) v3.5.1cmameB249
CmaCh14G001690Watermelon (Charleston Gray)cmawcgB222
CmaCh14G001690Watermelon (Charleston Gray)cmawcgB228
CmaCh14G001690Watermelon (Charleston Gray)cmawcgB230
CmaCh14G001690Watermelon (97103) v1cmawmB228
CmaCh14G001690Watermelon (97103) v1cmawmB246
CmaCh14G001690Watermelon (97103) v1cmawmB248
CmaCh14G001690Cucurbita pepo (Zucchini)cmacpeB256
CmaCh14G001690Cucurbita pepo (Zucchini)cmacpeB265
CmaCh14G001690Cucurbita pepo (Zucchini)cmacpeB278
CmaCh14G001690Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G001690Cucurbita pepo (Zucchini)cmacpeB296
CmaCh14G001690Bottle gourd (USVL1VR-Ls)cmalsiB230
CmaCh14G001690Bottle gourd (USVL1VR-Ls)cmalsiB227
CmaCh14G001690Bottle gourd (USVL1VR-Ls)cmalsiB242
CmaCh14G001690Bottle gourd (USVL1VR-Ls)cmalsiB244
CmaCh14G001690Cucumber (Gy14) v2cgybcmaB306
CmaCh14G001690Cucumber (Gy14) v2cgybcmaB488
CmaCh14G001690Cucumber (Gy14) v2cgybcmaB599
CmaCh14G001690Cucumber (Gy14) v2cgybcmaB735
CmaCh14G001690Melon (DHL92) v3.6.1cmamedB243
CmaCh14G001690Melon (DHL92) v3.6.1cmamedB260
CmaCh14G001690Melon (DHL92) v3.6.1cmamedB283
CmaCh14G001690Silver-seed gourdcarcmaB0203
CmaCh14G001690Silver-seed gourdcarcmaB0656
CmaCh14G001690Cucumber (Chinese Long) v3cmacucB0279
CmaCh14G001690Cucumber (Chinese Long) v3cmacucB0302
CmaCh14G001690Cucumber (Chinese Long) v3cmacucB0312
CmaCh14G001690Watermelon (97103) v2cmawmbB256
CmaCh14G001690Watermelon (97103) v2cmawmbB259