CmoCh13G011160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G011160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Wiskott-Aldrich syndrome protein family member 2
Location	Cmo_Chr13 : 9116446 .. 9117255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAATATCTGAATCCTCAGCCTCTCCATCACTCATGTCCATGGTGCAGGCCTCTGCAATTCTCTCAGTCAGATTCAGCCCTAACCATCGCCGTTCTTCAGAGCTCATACACACTCCCCGGCTAGAGACGCTCAGCTATGGAGGTCACTTCTTTCTGTGGCAGCAGCAGAGCAGCTTCGTTCGTCTACACCTATCCATCCAAAACGAATTCAAGAAAACAATCTCTTGATCTACGCTCCATGGCCATCGCCTCCACCAAGAAGGTCGGTTCCTCTTTCTCGCTTGCATATTTCCTTTTTATTCCTCTGAATCGCTTCAATGTCGTCGCATAAACTTAATTTCTGTAAATCCAAGACTCAAGAGCCAGCATTCTGCAGGTTAACTCGACGGTGTTCCCTCTCGGGGAGAAAGGACCGAGGAGTAGCATCTCGCTCTCGACCTCGCCGCCGATTAAACTACTGACGAGGGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCTGGCCTGCTGTCTGCGGCGGAGAAGGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTGGGGATTTTATCGGCGGCGACGGATCCGGGAACTCCCGGGGCGCTACTTAGTCTGAGCTTGGGGCTGTTGCTATTGGGGCCTTCGTGCGTGTATTTGGTGCCGGAGGAGAGTGTTTGGGAAATCGCGTTGCAGGCGGCGGTGGCTCTGGTCTCAGTCGTGGGCGGCTCAGCGGCATTTGCTGCGTCGAATTTGGTGTCCAATTTGCAGAGATCCAATTGA

mRNA sequence

TTCAAATATCTGAATCCTCAGCCTCTCCATCACTCATGTCCATGGTGCAGGCCTCTGCAATTCTCTCAGTCAGATTCAGCCCTAACCATCGCCGTTCTTCAGAGCTCATACACACTCCCCGGCTAGAGACGCTCAGCTATGGAGGTCACTTCTTTCTGTGGCAGCAGCAGAGCAGCTTCGTTCGTCTACACCTATCCATCCAAAACGAATTCAAGAAAACAATCTCTTGATCTACGCTCCATGGCCATCGCCTCCACCAAGAAGGTTAACTCGACGGTGTTCCCTCTCGGGGAGAAAGGACCGAGGAGTAGCATCTCGCTCTCGACCTCGCCGCCGATTAAACTACTGACGAGGGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCTGGCCTGCTGTCTGCGGCGGAGAAGGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTGGGGATTTTATCGGCGGCGACGGATCCGGGAACTCCCGGGGCGCTACTTAGTCTGAGCTTGGGGCTGTTGCTATTGGGGCCTTCGTGCGTGTATTTGGTGCCGGAGGAGAGTGTTTGGGAAATCGCGTTGCAGGCGGCGGTGGCTCTGGTCTCAGTCGTGGGCGGCTCAGCGGCATTTGCTGCGTCGAATTTGGTGTCCAATTTGCAGAGATCCAATTGA

Coding sequence (CDS)

ATGGAGGTCACTTCTTTCTGTGGCAGCAGCAGAGCAGCTTCGTTCGTCTACACCTATCCATCCAAAACGAATTCAAGAAAACAATCTCTTGATCTACGCTCCATGGCCATCGCCTCCACCAAGAAGGTTAACTCGACGGTGTTCCCTCTCGGGGAGAAAGGACCGAGGAGTAGCATCTCGCTCTCGACCTCGCCGCCGATTAAACTACTGACGAGGGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCTGGCCTGCTGTCTGCGGCGGAGAAGGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTGGGGATTTTATCGGCGGCGACGGATCCGGGAACTCCCGGGGCGCTACTTAGTCTGAGCTTGGGGCTGTTGCTATTGGGGCCTTCGTGCGTGTATTTGGTGCCGGAGGAGAGTGTTTGGGAAATCGCGTTGCAGGCGGCGGTGGCTCTGGTCTCAGTCGTGGGCGGCTCAGCGGCATTTGCTGCGTCGAATTTGGTGTCCAATTTGCAGAGATCCAATTGA

Homology

[Close]

BLAST of CmoCh13G011160 vs. TrEMBL
Match: A0A0A0LQ98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039250 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.4e-73
Identity = 165/197 (83.76%), Postives = 174/197 (88.32%), Query Frame = 1


Query: 1   MEVTSFCGSS-RAASFVYTYPSKTNSR-KQSLDLRSMAI----------ASTKKVNSTVF 60
           MEVTSFC SS RAASF+Y+YPS T SR K+ L L SMA             +KK+N+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMATEKPLPSAAKTVGSKKINTTVF 60

Query: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 121 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGG 180
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPE+SVWEI LQ AVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 181 SAAFAASNLVSNLQRSN 186
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of CmoCh13G011160 vs. TrEMBL
Match: B9RLM5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469500 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.8e-56
Identity = 140/193 (72.54%), Postives = 154/193 (79.79%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTYPSKTNSRKQSLDLRSMAIAS---------TKKVNSTVFPLG 60
           ME  +  GS R   F+Y+ P+     K++L  RSMA            + + NSTVFPLG
Sbjct: 1   MEAAAISGS-RGICFLYSSPNG----KRTLLNRSMAAQKPVPSAAKTVSSRKNSTVFPLG 60

Query: 61  EKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAE 120
           EKGPR+S  L TSPPIKLLTRVE+LKLLSKAEKAGLLSAAEK GLSLS+IEKLGLLSKAE
Sbjct: 61  EKGPRNS-PLVTSPPIKLLTRVEELKLLSKAEKAGLLSAAEKFGLSLSTIEKLGLLSKAE 120

Query: 121 ELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGGSAA 180
           ELG+LSAATDPGTPGAL SLSLGLLLLGPSCVYLVPE+  WEI LQ AVALVSVVGGSAA
Sbjct: 121 ELGVLSAATDPGTPGALFSLSLGLLLLGPSCVYLVPEDYPWEIVLQVAVALVSVVGGSAA 180

Query: 181 FAASNLVSNLQRS 185
           FAASNLVSNLQ+S
Sbjct: 181 FAASNLVSNLQKS 187

[Close]

BLAST of CmoCh13G011160 vs. TrEMBL
Match: A0A067K8M1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11734 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 124/152 (81.58%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 34  SMAIASTKKVNSTVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEK 93
           S  ++S K  NSTVFPLGEKGPR  + L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK
Sbjct: 12  SKTVSSRK--NSTVFPLGEKGPRKEL-LATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEK 71

Query: 94  AGLSLSSIEKLGLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWE 153
            GLSLS+IEKLGLLSKAEELG+LSAATDPGTPGAL SLSLG+L LGPSCVY +PE+S+WE
Sbjct: 72  FGLSLSTIEKLGLLSKAEELGVLSAATDPGTPGALFSLSLGILFLGPSCVYFLPEDSIWE 131

Query: 154 IALQAAVALVSVVGGSAAFAASNLVSNLQRSN 186
           I LQ AVAL+SVVGGSAAFAASN VSNLQ+SN
Sbjct: 132 IVLQIAVALLSVVGGSAAFAASNFVSNLQKSN 160

[Close]

BLAST of CmoCh13G011160 vs. TrEMBL
Match: A0A067FHY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028863mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.3e-54
Identity = 133/196 (67.86%), Postives = 152/196 (77.55%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTYPSKTNSRKQSLDLRSMAIASTKKV-----------NSTVFP 60
           ME  +F G SR    ++  PS ++ R     L   ++A+ K +           NS VFP
Sbjct: 1   MEAAAFYGGSRGIPCIHP-PSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFP 60

Query: 61  LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSK 120
           LGE GPR++  L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK GLSLSSIEKLGLLSK
Sbjct: 61  LGEPGPRNA-PLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSK 120

Query: 121 AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGGS 180
           AEE G+LSAATDP TPGALL+LSLGLLLLGPSCVYLVPE+  WE+ALQ  VALVSVVGGS
Sbjct: 121 AEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGS 180

Query: 181 AAFAASNLVSNLQRSN 186
           AAFAASNLVSNLQ+S+
Sbjct: 181 AAFAASNLVSNLQKSS 194

[Close]

BLAST of CmoCh13G011160 vs. TrEMBL
Match: V4TVQ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022373mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.3e-54
Identity = 133/196 (67.86%), Postives = 152/196 (77.55%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTYPSKTNSRKQSLDLRSMAIASTKKV-----------NSTVFP 60
           ME  +F G SR    ++  PS ++ R     L   ++A+ K +           NS VFP
Sbjct: 1   MEAAAFYGGSRGIRCIHP-PSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFP 60

Query: 61  LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSK 120
           LGE GPR++  L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK GLSLSSIEKLGLLSK
Sbjct: 61  LGEPGPRNA-PLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSK 120

Query: 121 AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGGS 180
           AEE G+LSAATDP TPGALL+LSLGLLLLGPSCVYLVPE+  WE+ALQ  VALVSVVGGS
Sbjct: 121 AEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGS 180

Query: 181 AAFAASNLVSNLQRSN 186
           AAFAASNLVSNLQ+S+
Sbjct: 181 AAFAASNLVSNLQKSS 194

[Close]

BLAST of CmoCh13G011160 vs. TAIR10
Match: AT5G08050.1 (AT5G08050.1 Protein of unknown function (DUF1118))

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-39
Identity = 93/148 (62.84%), Postives = 113/148 (76.35%), Query Frame = 1


Query: 46  TVFPLGEKGPRSSISLST--------SPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLS 105
           TV  +  K P  S +  T        +P +KLLTRVEQLKLL+KAEKAGLLS AEK+G S
Sbjct: 11  TVHSMANKKPSPSAATRTITSKKSTATPQVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFS 70

Query: 106 LSSIEKLGLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQ 165
           LS+IE+LGLL+KAEE G+LSAAT+P TPG L +LSLGLLLLGP   Y+VPE+  WE+ +Q
Sbjct: 71  LSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQ 130

Query: 166 AAVALVSVVGGSAAFAASNLVSNLQRSN 186
             VAL+SV+GGSAAFAAS  VSNLQ+S+
Sbjct: 131 VLVALLSVLGGSAAFAASGFVSNLQKSD 158

[Close]

BLAST of CmoCh13G011160 vs. TAIR10
Match: AT1G74730.1 (AT1G74730.1 Protein of unknown function (DUF1118))

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 35  MAIASTKKVNSTVFPLGEKGPRSSISLSTSPPIKL--LTRVEQLKLLSKAEKAGLLSAAE 94
           +A+A  KKVN       ++   + +    S  I +    ++E+ K+LS  EK+GLLS AE
Sbjct: 44  VAMAPQKKVNKYDAKWKKQWYGAGLFFEGSEQINVDVFKKLEKRKVLSNVEKSGLLSKAE 103

Query: 95  KAGLSLSSIEKLGLLSKAEELGILSAATD-PGT-PGALLSLSLGLLLLGPSCVYLVPEES 154
             GL+LSS+EKL + SKAE+LG+LS   +  GT P  L S +L  L      V L+P++S
Sbjct: 104 GLGLTLSSLEKLKVFSKAEDLGLLSLLENLAGTSPAVLASAALPALTAAIVAVVLIPDDS 163

Query: 155 VWEIALQAAVALVSVVGGSAAFAASNLVSNLQRSN 186
              +  QA +A    + G      S ++  LQ ++
Sbjct: 164 TTLVVAQAVLAGALALTGVVLLVGSVVLDGLQEAD 198

[Close]

BLAST of CmoCh13G011160 vs. NCBI nr
Match: gi|449439329|ref|XP_004137438.1| (PREDICTED: uncharacterized protein LOC101204037 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 7.8e-73
Identity = 165/197 (83.76%), Postives = 174/197 (88.32%), Query Frame = 1


Query: 1   MEVTSFCGSS-RAASFVYTYPSKTNSR-KQSLDLRSMAI----------ASTKKVNSTVF 60
           MEVTSFC SS RAASF+Y+YPS T SR K+ L L SMA             +KK+N+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMATEKPLPSAAKTVGSKKINTTVF 60

Query: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 121 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGG 180
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPE+SVWEI LQ AVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 181 SAAFAASNLVSNLQRSN 186
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of CmoCh13G011160 vs. NCBI nr
Match: gi|659066578|ref|XP_008451074.1| (PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 7.8e-73
Identity = 165/197 (83.76%), Postives = 174/197 (88.32%), Query Frame = 1


Query: 1   MEVTSFCGSS-RAASFVYTYPSKTNSR-KQSLDLRSMAI----------ASTKKVNSTVF 60
           MEVTSFC SS RAASF+Y+YPS T SR K+ L L SMA             +KK+N+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMAAEKPPPSASKTVGSKKINTTVF 60

Query: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 121 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGG 180
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPE+SVWEI LQ AVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 181 SAAFAASNLVSNLQRSN 186
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of CmoCh13G011160 vs. NCBI nr
Match: gi|255547173|ref|XP_002514644.1| (PREDICTED: uncharacterized protein LOC8284419 [Ricinus communis])

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 140/193 (72.54%), Postives = 154/193 (79.79%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTYPSKTNSRKQSLDLRSMAIAS---------TKKVNSTVFPLG 60
           ME  +  GS R   F+Y+ P+     K++L  RSMA            + + NSTVFPLG
Sbjct: 1   MEAAAISGS-RGICFLYSSPNG----KRTLLNRSMAAQKPVPSAAKTVSSRKNSTVFPLG 60

Query: 61  EKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAE 120
           EKGPR+S  L TSPPIKLLTRVE+LKLLSKAEKAGLLSAAEK GLSLS+IEKLGLLSKAE
Sbjct: 61  EKGPRNS-PLVTSPPIKLLTRVEELKLLSKAEKAGLLSAAEKFGLSLSTIEKLGLLSKAE 120

Query: 121 ELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGGSAA 180
           ELG+LSAATDPGTPGAL SLSLGLLLLGPSCVYLVPE+  WEI LQ AVALVSVVGGSAA
Sbjct: 121 ELGVLSAATDPGTPGALFSLSLGLLLLGPSCVYLVPEDYPWEIVLQVAVALVSVVGGSAA 180

Query: 181 FAASNLVSNLQRS 185
           FAASNLVSNLQ+S
Sbjct: 181 FAASNLVSNLQKS 187

[Close]

BLAST of CmoCh13G011160 vs. NCBI nr
Match: gi|802653518|ref|XP_012080393.1| (PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 138/202 (68.32%), Postives = 158/202 (78.22%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTY-----PSKT-NSRKQS-LDLRSMAIAS----------TKKV 60
           +E T+   SSR   ++Y+Y     PS T NS   S L ++SMA             + + 
Sbjct: 2   IESTAISASSRVIPYLYSYSNRMKPSITENSPSYSPLLIKSMATPKPLPSSASKTVSSRK 61

Query: 61  NSTVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEK 120
           NSTVFPLGEKGPR  + L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK GLSLS+IEK
Sbjct: 62  NSTVFPLGEKGPRKEL-LATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSTIEK 121

Query: 121 LGLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALV 180
           LGLLSKAEELG+LSAATDPGTPGAL SLSLG+L LGPSCVY +PE+S+WEI LQ AVAL+
Sbjct: 122 LGLLSKAEELGVLSAATDPGTPGALFSLSLGILFLGPSCVYFLPEDSIWEIVLQIAVALL 181

Query: 181 SVVGGSAAFAASNLVSNLQRSN 186
           SVVGGSAAFAASN VSNLQ+SN
Sbjct: 182 SVVGGSAAFAASNFVSNLQKSN 202

[Close]

BLAST of CmoCh13G011160 vs. NCBI nr
Match: gi|568847723|ref|XP_006477681.1| (PREDICTED: uncharacterized protein LOC102627842 [Citrus sinensis])

HSP 1 Score: 222.2 bits (565), Expect = 7.3e-55
Identity = 134/196 (68.37%), Postives = 153/196 (78.06%), Query Frame = 1


Query: 1   MEVTSFCGSSRAASFVYTYPSKTNSRKQSLDLRSMAIASTKKV-----------NSTVFP 60
           ME  +F G SR    ++  PS ++ R     L   ++A+ K +           NS VFP
Sbjct: 1   MEAAAFYGGSRGIPCIHP-PSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFP 60

Query: 61  LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSK 120
           LGE GPR++ +L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK GLSLSSIEKLGLLSK
Sbjct: 61  LGEPGPRNA-ALATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSK 120

Query: 121 AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSVVGGS 180
           AEE G+LSAATDP TPGALL+LSLGLLLLGPSCVYLVPE+  WE+ALQ  VALVSVVGGS
Sbjct: 121 AEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGS 180

Query: 181 AAFAASNLVSNLQRSN 186
           AAFAASNLVSNLQ+SN
Sbjct: 181 AAFAASNLVSNLQKSN 194

The following BLAST results are available for this feature:

BLAST of CmoCh13G011160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G011160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ98_CUCSA	5.4e-73	83.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039250 PE=4 SV=1	[more]
B9RLM5_RICCO	7.8e-56	72.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469500 PE=4 SV=1	[more]
A0A067K8M1_JATCU	1.9e-54	81.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11734 PE=4 SV=1	[more]
A0A067FHY6_CITSI	3.3e-54	67.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028863mg PE=4 SV=1	[more]
V4TVQ8_9ROSI	3.3e-54	67.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022373mg PE=4 SV=1	[more]

BLAST of CmoCh13G011160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08050.1	1.2e-39	62.84	Protein of unknown function (DUF1118)	[more]
AT1G74730.1	2.9e-09	34.84	Protein of unknown function (DUF1118)	[more]

BLAST of CmoCh13G011160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439329\|ref\|XP_004137438.1\|	7.8e-73	83.76	PREDICTED: uncharacterized protein LOC101204037 [Cucumis sativus]	[more]
gi\|659066578\|ref\|XP_008451074.1\|	7.8e-73	83.76	PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo]	[more]
gi\|255547173\|ref\|XP_002514644.1\|	1.1e-55	72.54	PREDICTED: uncharacterized protein LOC8284419 [Ricinus communis]	[more]
gi\|802653518\|ref\|XP_012080393.1\|	1.9e-55	68.32	PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]	[more]
gi\|568847723\|ref\|XP_006477681.1\|	7.3e-55	68.37	PREDICTED: uncharacterized protein LOC102627842 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009500	DUF1118

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0090391	granum assembly
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0080167	response to karrikin
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009515	granal stacked thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G011160.1	CmoCh13G011160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009500	Protein of unknown function DUF1118	PFAM	PF06549	DUF1118	coord: 72..184 score: 1.5
None	No IPR available	PANTHER	PTHR31425	FAMILY NOT NAMED	coord: 30..185 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G011160	Cucsa.113280	Cucumber (Gy14) v1	cgycmoB0262
CmoCh13G011160	Cla018557	Watermelon (97103) v1	cmowmB194
CmoCh13G011160	Csa1G039250	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G011160	MELO3C002036	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G011160	ClCG04G011740	Watermelon (Charleston Gray)	cmowcgB191
CmoCh13G011160	CSPI01G06190	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G011160	Lsi02G001220	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G011160	Cp4.1LG09g11670	Cucurbita pepo (Zucchini)	cmocpeB183
CmoCh13G011160	Cp4.1LG20g00790	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G011160	MELO3C002036.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G011160	CsaV3_1G006050	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G011160	Cla97C04G078590	Watermelon (97103) v2	cmowmbB216
CmoCh13G011160	CsGy1G005900	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G011160	Carg04765	Silver-seed gourd	carcmoB0526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G011160	Melon (DHL92) v3.6.1	cmomedB213
CmoCh13G011160	Silver-seed gourd	carcmoB0698
CmoCh13G011160	Silver-seed gourd	carcmoB0810
CmoCh13G011160	Cucumber (Chinese Long) v3	cmocucB0242
CmoCh13G011160	Cucumber (Chinese Long) v3	cmocucB0252
CmoCh13G011160	Watermelon (97103) v2	cmowmbB222
CmoCh13G011160	Wax gourd	cmowgoB0247
CmoCh13G011160	Wax gourd	cmowgoB0275
CmoCh13G011160	Cucurbita moschata (Rifu)	cmocmoB052
CmoCh13G011160	Cucurbita moschata (Rifu)	cmocmoB089
CmoCh13G011160	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh13G011160	Cucurbita moschata (Rifu)	cmocmoB188
CmoCh13G011160	Cucumber (Gy14) v1	cgycmoB0585
CmoCh13G011160	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G011160	Cucurbita maxima (Rimu)	cmacmoB082
CmoCh13G011160	Cucurbita maxima (Rimu)	cmacmoB125
CmoCh13G011160	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G011160	Wild cucumber (PI 183967)	cmocpiB212
CmoCh13G011160	Cucumber (Chinese Long) v2	cmocuB210
CmoCh13G011160	Melon (DHL92) v3.5.1	cmomeB191
CmoCh13G011160	Watermelon (Charleston Gray)	cmowcgB195
CmoCh13G011160	Watermelon (97103) v1	cmowmB202
CmoCh13G011160	Cucurbita pepo (Zucchini)	cmocpeB196
CmoCh13G011160	Cucurbita pepo (Zucchini)	cmocpeB212
CmoCh13G011160	Bottle gourd (USVL1VR-Ls)	cmolsiB206
CmoCh13G011160	Cucumber (Gy14) v2	cgybcmoB075