CmoCh13G010790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G010790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ROTUNDIFOLIA like 21
Location	Cmo_Chr13 : 8930929 .. 8932207 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGATTTCAACTTTATCCTAAAGTTTCTGAATTTAGTAAAAAATTTCAAATTTCTGTATCTTACCAGGCATGAGCTGGATGAGTCAACAACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATTTCAGGTGCGTAGTGTCCTCCCCTCACTCCACACATTTTCCCCCGGTTTATCAGCACATGAACTAGAATTGGAATTATGCTCACAGGTCTAATCCGATTGACTTGTCATCAAACACATAAGCACAAAAGAAAAGAGAAAAGTAGTCCACCCCTTTATTTGCTGACTCCATTTCTAGATATTTGAACGACTTAAAAAGGCAGGCAATTTTAGAACCGCATATAGTATCCATGAAGAATTTGAGGCAGAGATTGCAGTTTAGTTGTATATGGACCGACAGAAATAGTGGCACTAATTTAACATGGTCATGAAGTTTAGAGTTTCTAAAACCATACATGTAATCTAAGGTTGTCCTCTTGTCAGACATATGCCATGCCCTCCCCCCCTGAACTTCACGTGTATGTCCTCATTTTCACGTGTACAATGTCTTCAATATGGCTTTTGCCTTTTAAGACAAAGTTACTCGGTAGTCTGGGGGACCCCCCCACCCCCACCTTTCCCTTCGTTATTTTGGGTCCTTCCTCTTTCTTGTGGAATCTGTCTTGGGAACATCTTGGCTTCCTCACCTTCCTTACGACTACCTCTCTGAGAAAAAGAAAAAGCTGAGAAACTTTCTTGCTTTCACTCAGCGAACAGTTCTGTGATTGAGCGAGTTGTTTAATTTTGATGGGACCAAAAGCGCCTCACAGATTATCAAAGATCAGATTTATTTATTTATAATATTCCTTTTAGCATTATTCATCTCTGGTGGATTGTTGGTTTTCAATTAGAAAATAGCAAGATGATGGGACCCTGGTCTTATTTGCCGCCTGATAAGTCATGGCCTTTGATTTTTGGATCTTGTGGGTTGGTCCAAGTTTAAGCTGATCCCATCCATCTTTCCCTTTAAGAACATCCATATGTTTCTCAGAGATTTTTCCATGCCAAGTATGAACAAGGACTGTGACAGTGAATGAAGCTACTTTTAATCACTGGAAGGTAGACACGAAGAGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTACAGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGAT

mRNA sequence

TATGATTTCAACTTTATCCTAAAGTTTCTGAATTTAGTAAAAAATTTCAAATTTCTGTATCTTACCAGGCATGAGCTGGATGAGTCAACAACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATTTCAGCATTATTCATCTCTGGTGGATTGTTGGTTTTCAATTAGAAAATAGCAAGATGATGGGACCCTGGTCTTATTTGCCGCCTGATAAGTCATGGCCTTTGATTTTTGGATCTTGTGGGTTGGTCCAAGTAGACACGAAGAGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTACAGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGAT

Coding sequence (CDS)

TATGATTTCAACTTTATCCTAAAGTTTCTGAATTTAGTAAAAAATTTCAAATTTCTGTATCTTACCAGGCATGAGCTGGATGAGTCAACAACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATTTCAGCATTATTCATCTCTGGTGGATTGTTGGTTTTCAATTAGAAAATAGCAAGATGATGGGACCCTGGTCTTATTTGCCGCCTGATAAGTCATGGCCTTTGATTTTTGGATCTTGTGGGTTGGTCCAAGTAGACACGAAGAGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTACAGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGAT

Homology

[Close]

BLAST of CmoCh13G010790 vs. TrEMBL
Match: A0A0A0LTM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042190 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-19
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 90  TKRETEEDMKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           TK+  EEDMK+++GS IENSKTKSSCK ATGFVQEGKGRLYIFGRCVAMLLCWHD
Sbjct: 5   TKKGIEEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 59

[Close]

BLAST of CmoCh13G010790 vs. TrEMBL
Match: U5GEU3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10280g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-07
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 86  VQVDTKRETEEDMKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           +   T ++T+  MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 63  LSASTSQKTKT-MKMTSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 120

[Close]

BLAST of CmoCh13G010790 vs. TrEMBL
Match: A9PBK7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 98  MKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           MKM +G+ +  SK K SC+   G++++ KGRLYI  RCV ML+CWHD
Sbjct: 1   MKMMSGATMGESKKKISCRRLGGYLRQQKGRLYIIRRCVVMLVCWHD 47

[Close]

BLAST of CmoCh13G010790 vs. TAIR10
Match: AT1G67265.1 (AT1G67265.1 ROTUNDIFOLIA like 21)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 106 IENSKTKSSC-KEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           ++ +K K+ C K+  G+++E KGRLYI  RCV ML+CWHD
Sbjct: 1   MKGTKKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of CmoCh13G010790 vs. TAIR10
Match: AT1G68825.1 (AT1G68825.1 ROTUNDIFOLIA like 15)

HSP 1 Score: 47.4 bits (111), Expect = 8.8e-06
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 1


Query: 103 GSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           GS +  +K K   +   G V+E K +LYI  RCV MLLCWHD
Sbjct: 5   GSSVGGTKRKMWSRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of CmoCh13G010790 vs. NCBI nr
Match: gi|700209011|gb|KGN64107.1| (hypothetical protein Csa_1G042190 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 8.6e-19
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 90  TKRETEEDMKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           TK+  EEDMK+++GS IENSKTKSSCK ATGFVQEGKGRLYIFGRCVAMLLCWHD
Sbjct: 5   TKKGIEEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 59

[Close]

BLAST of CmoCh13G010790 vs. NCBI nr
Match: gi|566165888|ref|XP_006384216.1| (hypothetical protein POPTR_0004s10280g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 86  VQVDTKRETEEDMKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           +   T ++T+  MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 63  LSASTSQKTKT-MKMTSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 120

[Close]

BLAST of CmoCh13G010790 vs. NCBI nr
Match: gi|743920739|ref|XP_011004423.1| (PREDICTED: uncharacterized protein LOC105110917 [Populus euphratica])

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 98  MKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 1   MKMMSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 47

[Close]

BLAST of CmoCh13G010790 vs. NCBI nr
Match: gi|118483734|gb|ABK93760.1| (unknown [Populus trichocarpa])

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 98  MKMKAGSRIENSKTKSSCKEATGFVQEGKGRLYIFGRCVAMLLCWHD 145
           MKM +G+ +  SK K SC+   G++++ KGRLYI  RCV ML+CWHD
Sbjct: 1   MKMMSGATMGESKKKISCRRLGGYLRQQKGRLYIIRRCVVMLVCWHD 47

The following BLAST results are available for this feature:

BLAST of CmoCh13G010790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G010790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM0_CUCSA	6.0e-19	85.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042190 PE=4 SV=1	[more]
U5GEU3_POPTR	8.9e-07	47.46	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10280g PE=4 SV=1	[more]
A9PBK7_POPTR	2.6e-06	53.19	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of CmoCh13G010790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67265.1	1.4e-06	52.50	ROTUNDIFOLIA like 21	[more]
AT1G68825.1	8.8e-06	50.00	ROTUNDIFOLIA like 15	[more]

BLAST of CmoCh13G010790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209011\|gb\|KGN64107.1\|	8.6e-19	85.45	hypothetical protein Csa_1G042190 [Cucumis sativus]	[more]
gi\|566165888\|ref\|XP_006384216.1\|	1.3e-06	47.46	hypothetical protein POPTR_0004s10280g [Populus trichocarpa]	[more]
gi\|743920739\|ref\|XP_011004423.1\|	1.7e-06	55.32	PREDICTED: uncharacterized protein LOC105110917 [Populus euphratica]	[more]
gi\|118483734\|gb\|ABK93760.1\|	3.7e-06	53.19	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G010790.1	CmoCh13G010790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 124..141 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G010790	CmaCh13G010380	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G010790	Csa1G042190	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G010790	ClCG04G011260	Watermelon (Charleston Gray)	cmowcgB191
CmoCh13G010790	Cla97C04G078130	Watermelon (97103) v2	cmowmbB216
CmoCh13G010790	Carg04802	Silver-seed gourd	carcmoB0526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G010790	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G010790	Cucumber (Chinese Long) v3	cmocucB0238
CmoCh13G010790	Cucumber (Chinese Long) v3	cmocucB0251
CmoCh13G010790	Watermelon (97103) v2	cmowmbB220
CmoCh13G010790	Watermelon (97103) v2	cmowmbB222
CmoCh13G010790	Wax gourd	cmowgoB0258
CmoCh13G010790	Wax gourd	cmowgoB0273
CmoCh13G010790	Cucurbita moschata (Rifu)	cmocmoB052
CmoCh13G010790	Cucurbita moschata (Rifu)	cmocmoB089
CmoCh13G010790	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh13G010790	Cucumber (Gy14) v1	cgycmoB0262
CmoCh13G010790	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G010790	Cucurbita maxima (Rimu)	cmacmoB082
CmoCh13G010790	Cucurbita maxima (Rimu)	cmacmoB125
CmoCh13G010790	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G010790	Wild cucumber (PI 183967)	cmocpiB209
CmoCh13G010790	Cucumber (Chinese Long) v2	cmocuB207
CmoCh13G010790	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G010790	Melon (DHL92) v3.5.1	cmomeB191
CmoCh13G010790	Watermelon (Charleston Gray)	cmowcgB195
CmoCh13G010790	Watermelon (97103) v1	cmowmB194
CmoCh13G010790	Watermelon (97103) v1	cmowmB202
CmoCh13G010790	Cucurbita pepo (Zucchini)	cmocpeB183
CmoCh13G010790	Cucurbita pepo (Zucchini)	cmocpeB196
CmoCh13G010790	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G010790	Cucurbita pepo (Zucchini)	cmocpeB212
CmoCh13G010790	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G010790	Bottle gourd (USVL1VR-Ls)	cmolsiB206
CmoCh13G010790	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G010790	Cucumber (Gy14) v2	cgybcmoB071
CmoCh13G010790	Cucumber (Gy14) v2	cgybcmoB566
CmoCh13G010790	Melon (DHL92) v3.6.1	cmomedB195
CmoCh13G010790	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G010790	Melon (DHL92) v3.6.1	cmomedB213
CmoCh13G010790	Silver-seed gourd	carcmoB0626
CmoCh13G010790	Silver-seed gourd	carcmoB0698
CmoCh13G010790	Silver-seed gourd	carcmoB0810