CmaCh13G010380 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G010380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ROTUNDIFOLIA like 21
Location	Cma_Chr13 : 7921493 .. 7925642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGATCAATCGTCCGGTCGAAATTTTTCGTAAGGAACGAATTGAAGGTGATCTTATCTGGAACTTGATGTTTTTGAATTGTGCGCTTTATGGAAGACCATACACTTGTGAGACATGTAGCCTTGTAAACTTAAATATATATAGAGGATTTGTTCATAGTTGAAGTTGGAATAGAAGGCATCAATGGAACACAGTGTGGATGCCATAATCTGCAGCGTGGTTATTTCTCGTGTTCCTCAGAATCAAAATCGTTTCTTTTATAATATATTAGAAAGATCGAAATCATATTTCTCCCAACAAAGAAACTTGTAGAGAAGGTTCCGAATTCCAAGCTTAAGGTGAGGAACTAGCAAAAATTCCGTGGACTTCAAAAAAAAAAACGAAAAAGATAACAGCTGAAACATTCCTTATATTCCTACTACTGTTGGTTTGTCTTTTTATTGCAGATGGTTCAATGACTTATCTGAGCTTCTGTTGAAGGAATTTTTGTTGTTTAATATGGATCAGACTGGCGGATGCTGTTCAAGAATATAGAAATGACAAGAGGTAGTTGCCCATTGTCCTTTTAGCTTTGGAATGATTGCGTTTTCAACTTCTTTGAGTTTATACGGTATAGAAATTGAAAGTGTACGAACTTGCCTCATCTTCTTTCCAATTTGGACGAAATGGTTGAATGATCTTGTGTGTATCAACTCTATTTGGTTTTGTGGTGGTGGTTCTATTTTTCGTGCTGTGGGTGAGTGACGTGAAAACTTCTGTGCAGTTCTTGCTTGGACATTTTTTTAACCACCATTTATGCAATTGGTCTTGCCATGATTCTCTTGAATTTACTTTCACTTTCACTTGTACTGACCAGTGGCCATGCATTTTTCCTTCTCTCAATCATTTTATGTGCAACACCAGAATAAGACATAGTTTATGGCCCGTGGTTGTCTGATAAGTACTTGATTTTGGTTTGTTGGCTCAAATTGTACGAAAATATCTTTACTTCTTCAATTCTATGTCTCAAGAGACTTGCCCATCATCAACAAAAAGATGACATGATGTCTTTAAAGATGAGAATTTCTTTGGTGAAATAAGAGGATGGAAAGACTAAATGAAAGGGATTCGAGTGAGAGATTAGAGAAACAAGCAGAGACACAGTCACAGTGTTAGGGACAAATCTCTATAATAATAAGATATGTTCACTTTAAGCATAGCTACTTCCCGTAAAGCTTAGAGATAATTGCTTTTAGTTAGATTCATCTCTCTCTCTTCCCTTCCTTACTCATTGTAAAACTTTGTTCCCACTCTTACATCCTCATTCCACCAGAAAATCTTTCCTTCTACTCACCCTTGACCACATACCCGTGTATGAAGTTCTTTAGCTAACCTTTTCCTTTGCTTTTTAATAAAAATCATTTTATGATCTATAGTCTGCAAGCGCAAACAATGCTGTTCTTTTCTCTCTCATATTGAAAAAATATAGGTGTCATAAAAAGAATCAGTTTCATGTTTTTCTTAGGCTAAGCTAATTATCTTTTCCTGTTTCTGAGGGTTGAGCTTGAGGTTTCCTTAGCTTCTAGTTTTCACAAACGCAGCAATTTAATCTTCAACTGTAGAAGGAACTGCTAAATCGTTCTTGGGAACAAACTTCTGTTGGGAACTTTAACGAAGTTTTGACACGGTAGAGTGATTTGAAGAACACTGAACGCTCACTCCTCTCTTCTCGTGGTCCTTTCGCCTTTCCCCTCCAGTTGGACGCTCTAACCACTGTTTCCATCTTCCACACATACAGTTCTTCTTGTCTTTGGCCGAAGATGAGGGATCCGAATACTGATATTAGAAACACCCCTTTGTAGAAAATTTAATTTGGATACTTCCTCGGACTAGCCACCATTTTAGGAGAAGGGGTGTTGATTGATTCGAATTTCGTGTGTTTAGATCCCAATTTTCAAGGTGTTTGAGTTTGAATACGGTTGCTCTATGTTCAAACATTGATAAAGGGAGATGGGATTTACTCAAAATTTCATTTTGAGGTTGATTTCGTTCAAGCTACTGTTTTGCGTTTTTCTGGAAAGAGAGTCGTCGTAAAATCCCCACTAGTTTTCTGTGTTAGCAAGGGTGAGGTGAGCGATGTTTTTTTATTTGGGGGGGTGGTTGGAGTAAATTTTTGGACGATAATTATGACTTAAAGCTATGTGAAATATTAGCCGTTACAGTGAGTTAATAAACCACTTTACTTCTGTTTTCAAGTTGTGGCTGGACTTGGAGTGTACACAAAGAACTCAAGAGTTTGTGGTGGGGGTGCCTTAAAGCATCCATGGTCTAGGTGGCATCCTAAAATTTCATTGCTCAATGTCCATAAACATTATTTTATATTTAGACATAATTCTTGAATGAGCCTGAGCTGTTCTCTTGTTGTATTGCATGCAAAAGATGGAAGGTTGGTGCATTGTATTTGTTCATCATAAAAGAGTGTCTGAGACCAAACTGGGATGATCGTGAAGATGGGTTCAAACTTGAGATTGTTCCTATCAAATTTTACATGCTATTTTGAAAAAAACAAGACGACAGTATAGTAACAGAGCCAGTGTAGATTGTAGGAATTAAAGGAACTTAGAACTTACACTTCATGGGGCATAGAATTACAGAATGTTTTCTCATTGAAAAGTATTATTTACAATGACGATTTGTTCTTTACCATTAATGTTTGTTGTGGTAGCCACTTATGTTTTCTCCAAGTTCAGATAAGCCTTTTTTGTATGTGGACCAAAAGCTTAGCTTTCAAATATGGACCAAGGAAATATCAGAGGATTGGGCGATGGTTGGATGAGAATCCTCGATCCAAAAGAAAAGCTATATAATCATGATTTATGATTTCAACTTTATCCTAAAGTTACTGAATTTAGTAAAAGATTTCAAATTTCTGTATCTTACCAGGCATGAGCTGGATGAGTCAACGACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATGTCAGGTGCGTTGTGTCCTCCTCTCACTCCACACATTTTCCCCCGGTTTATCAGCACATGAACTAGAATTGGAATTATGCTCACAGGTCTAATCCGATTGACTTGTCATCAAACACATAAGCACAAAAGAAAAGAGAAAAGTAGTCCACCCCTTTATTTGCTGACTCCATTTCTAGATATTTGAACGATTTAAAAAGGCAGGCAATTTTAGAACCGCATATAGTATCCATGAAGAATTTGAGGCAGAGATTGCAGTTTAGTTGTATATGGACCGACAGAAATAGTGGCACTAATTTAACATGGTCATGAAGTTTAGAGTTTCTAAAACCACACATGTAATCTAAGGTTGTCCTCCTTGTCAGACATATGCCATGCCCTCCCCCCCTGAACTTCACGTGTATGTCCTCATTTTCACGTGTACAATGTCTTCAATATGGCTTTTGCCTTTTAAGACAAAGTTACTCGGTAGTCTGGGGGACCCCCCCACCCCTACCTTTCCCTTCGTTATTTTGGTCCTTCCTCTTTCTTGTGGAATCTGTCTTAGGAACATCTTGGCTTCCTCACCTTCCTTACGACTACCTCTCTGAGAAAAAGGAAGAAAAAGCTGAGAAACTTTCTTCCTTTCACTCAGCGAACAGTTCTGTGATTGAGCGAGTTATTTAATTTTAATGGGACCAAAAGCGCCTCACAGATTATCAAAGATCAGATTTATTTATTTTTTTATAATATTCCTTTTTAGCATTATTCATCTCTGGTGGATTGTTGGTTTTTAATTAGAAAATAGCAAGTTGATGGGACCCTGGTCTTATTTGCCGCCTGATAAGTCATGGCCTTTGATTTTTGGATCTTGGGGGTTGGTCCAAGTTTAAGCTGATCCCATCCATCTTTCCCTTTAAGAACATCCATATGTTTCTCAGAGATTTTTCCATGCCAAGTATGAACAAGGACTGTTAAAGTGAATGAAGCTACTTTTAATCACTGGAAGGTAGACGAAGAGGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTGCGGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGATTGA

mRNA sequence

ATGGATTTTGATCAATCGTCCGGTCGAAATTTTTCACTGGCGGATGCTGTTCAAGAATATAGAAATGACAAGAGGCATGAGCTGGATGAGTCAACGACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATGTCAGACGAAGAGGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTGCGGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGATTGA

Coding sequence (CDS)

ATGGATTTTGATCAATCGTCCGGTCGAAATTTTTCACTGGCGGATGCTGTTCAAGAATATAGAAATGACAAGAGGCATGAGCTGGATGAGTCAACGACTGTGTCGGGCTGCCTAGTTTCAAGTTCCCTTTCAATTCATGTCAGACGAAGAGGGGAAACTGAAGAAGATATGAAGATGAAAGCAGGTTCTAGAATTGAGAATTCCAAGACAAAATCCTCATGTAAAGAAGCTGCGGGATTTGTACAAGAAGGAAAAGGTAGGCTGTATATATTTGGTAGATGTGTTGCTATGCTTCTTTGCTGGCATGATTGA

Protein sequence

MDFDQSSGRNFSLADAVQEYRNDKRHELDESTTVSGCLVSSSLSIHVRRRGETEEDMKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD

Homology

[Close]

BLAST of CmaCh13G010380 vs. TrEMBL
Match: A0A0A0LTM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042190 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 54  EEDMKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           EEDMK+++GS IENSKTKSSCK A GFVQEGKGRLYIFGRCVAMLLCWHD
Sbjct: 10  EEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 59

[Close]

BLAST of CmaCh13G010380 vs. TrEMBL
Match: U5GEU3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10280g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 57  MKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 74  MKMTSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 120

[Close]

BLAST of CmaCh13G010380 vs. TrEMBL
Match: A9PBK7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 57  MKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           MKM +G+ +  SK K SC+   G++++ KGRLYI  RCV ML+CWHD
Sbjct: 1   MKMMSGATMGESKKKISCRRLGGYLRQQKGRLYIIRRCVVMLVCWHD 47

[Close]

BLAST of CmaCh13G010380 vs. TAIR10
Match: AT1G67265.1 (AT1G67265.1 ROTUNDIFOLIA like 21)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-07
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 65  IENSKTKSSC-KEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           ++ +K K+ C K+  G+++E KGRLYI  RCV ML+CWHD
Sbjct: 1   MKGTKKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of CmaCh13G010380 vs. TAIR10
Match: AT1G68825.1 (AT1G68825.1 ROTUNDIFOLIA like 15)

HSP 1 Score: 47.8 bits (112), Expect = 4.8e-06
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 1


Query: 62  GSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           GS +  +K K   +   G V+E K +LYI  RCV MLLCWHD
Sbjct: 5   GSSVGGTKRKMWSRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of CmaCh13G010380 vs. NCBI nr
Match: gi|700209011|gb|KGN64107.1| (hypothetical protein Csa_1G042190 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 54  EEDMKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           EEDMK+++GS IENSKTKSSCK A GFVQEGKGRLYIFGRCVAMLLCWHD
Sbjct: 10  EEDMKIRSGSTIENSKTKSSCKGATGFVQEGKGRLYIFGRCVAMLLCWHD 59

[Close]

BLAST of CmaCh13G010380 vs. NCBI nr
Match: gi|743920739|ref|XP_011004423.1| (PREDICTED: uncharacterized protein LOC105110917 [Populus euphratica])

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 57  MKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 1   MKMMSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 47

[Close]

BLAST of CmaCh13G010380 vs. NCBI nr
Match: gi|566165888|ref|XP_006384216.1| (hypothetical protein POPTR_0004s10280g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 57  MKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           MKM + + +E SK K SC+   G++++ KGRLYI  RCV MLLCWHD
Sbjct: 74  MKMTSQATMEESKKKMSCRRLGGYLRQQKGRLYIIRRCVVMLLCWHD 120

[Close]

BLAST of CmaCh13G010380 vs. NCBI nr
Match: gi|118483734|gb|ABK93760.1| (unknown [Populus trichocarpa])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 57  MKMKAGSRIENSKTKSSCKEAAGFVQEGKGRLYIFGRCVAMLLCWHD 104
           MKM +G+ +  SK K SC+   G++++ KGRLYI  RCV ML+CWHD
Sbjct: 1   MKMMSGATMGESKKKISCRRLGGYLRQQKGRLYIIRRCVVMLVCWHD 47

The following BLAST results are available for this feature:

BLAST of CmaCh13G010380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G010380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM0_CUCSA	1.8e-17	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042190 PE=4 SV=1	[more]
U5GEU3_POPTR	6.4e-07	55.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10280g PE=4 SV=1	[more]
A9PBK7_POPTR	1.4e-06	53.19	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of CmaCh13G010380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67265.1	5.7e-07	52.50	ROTUNDIFOLIA like 21	[more]
AT1G68825.1	4.8e-06	50.00	ROTUNDIFOLIA like 15	[more]

BLAST of CmaCh13G010380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209011\|gb\|KGN64107.1\|	2.6e-17	88.00	hypothetical protein Csa_1G042190 [Cucumis sativus]	[more]
gi\|743920739\|ref\|XP_011004423.1\|	9.2e-07	55.32	PREDICTED: uncharacterized protein LOC105110917 [Populus euphratica]	[more]
gi\|566165888\|ref\|XP_006384216.1\|	9.2e-07	55.32	hypothetical protein POPTR_0004s10280g [Populus trichocarpa]	[more]
gi\|118483734\|gb\|ABK93760.1\|	2.0e-06	53.19	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G010380.1	CmaCh13G010380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 83..100 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G010380	Csa1G042190	Cucumber (Chinese Long) v2	cmacuB217
CmaCh13G010380	CmoCh13G010790	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G010380	Cla97C04G078130	Watermelon (97103) v2	cmawmbB233
CmaCh13G010380	Carg04802	Silver-seed gourd	carcmaB0540

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G010380	Silver-seed gourd	carcmaB0645
CmaCh13G010380	Cucumber (Gy14) v2	cgybcmaB073
CmaCh13G010380	Cucumber (Gy14) v2	cgybcmaB077
CmaCh13G010380	Cucumber (Gy14) v2	cgybcmaB595
CmaCh13G010380	Melon (DHL92) v3.6.1	cmamedB206
CmaCh13G010380	Melon (DHL92) v3.6.1	cmamedB214
CmaCh13G010380	Melon (DHL92) v3.6.1	cmamedB227
CmaCh13G010380	Silver-seed gourd	carcmaB0721
CmaCh13G010380	Silver-seed gourd	carcmaB0832
CmaCh13G010380	Cucumber (Chinese Long) v3	cmacucB0248
CmaCh13G010380	Cucumber (Chinese Long) v3	cmacucB0252
CmaCh13G010380	Watermelon (97103) v2	cmawmbB238
CmaCh13G010380	Watermelon (97103) v2	cmawmbB240
CmaCh13G010380	Wax gourd	cmawgoB0266
CmaCh13G010380	Wax gourd	cmawgoB0282
CmaCh13G010380	Cucurbita maxima (Rimu)	cmacmaB090
CmaCh13G010380	Cucurbita maxima (Rimu)	cmacmaB127
CmaCh13G010380	Cucurbita maxima (Rimu)	cmacmaB217
CmaCh13G010380	Cucumber (Gy14) v1	cgycmaB0264
CmaCh13G010380	Cucurbita moschata (Rifu)	cmacmoB209
CmaCh13G010380	Cucurbita moschata (Rifu)	cmacmoB215
CmaCh13G010380	Cucurbita moschata (Rifu)	cmacmoB224
CmaCh13G010380	Wild cucumber (PI 183967)	cmacpiB218
CmaCh13G010380	Wild cucumber (PI 183967)	cmacpiB223
CmaCh13G010380	Cucumber (Chinese Long) v2	cmacuB221
CmaCh13G010380	Melon (DHL92) v3.5.1	cmameB193
CmaCh13G010380	Melon (DHL92) v3.5.1	cmameB207
CmaCh13G010380	Watermelon (Charleston Gray)	cmawcgB202
CmaCh13G010380	Watermelon (Charleston Gray)	cmawcgB208
CmaCh13G010380	Watermelon (97103) v1	cmawmB206
CmaCh13G010380	Watermelon (97103) v1	cmawmB214
CmaCh13G010380	Cucurbita pepo (Zucchini)	cmacpeB213
CmaCh13G010380	Cucurbita pepo (Zucchini)	cmacpeB229
CmaCh13G010380	Cucurbita pepo (Zucchini)	cmacpeB234
CmaCh13G010380	Cucurbita pepo (Zucchini)	cmacpeB246
CmaCh13G010380	Bottle gourd (USVL1VR-Ls)	cmalsiB208
CmaCh13G010380	Bottle gourd (USVL1VR-Ls)	cmalsiB218