CmoCh13G003480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RAN GTPase 3
Location	Cmo_Chr13 : 4439229 .. 4443068 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAGGGGGTATTAGAGATCCGTTGGAGAATCAGAGAGATGAGTGTAGAAGGGTCCGAAGATGTAAGTGGTGAACAAAGTTTGTATATTAATAGCAATTGGCAGCTCAATTTTCTCTCGCCGCCGATCTCGTTTTTCTTCTTCATTTCCGGAACCGGAATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGTACGTGTTGGTATTGATGCTTTTGTCGTTTTCGATCTGATTCCTCAATTGTGTCGCTTTGGTTATGGGTTGGTTTGTGCTTAATCTGTTTCTCTAATTTGATGATGTCAACGCTGCTCTGCTTGGTTTCCCTTTTGATTTGGGACTTGCTGTGTTTAGCTTTGTATTGGATGTTGTTTTCTGTTCGTCGATTGATTGTGAGGTTTGAAACTTAATTGTGCTGTGTTCTCCAGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGTTAGTTATCTCTCTTTCTTTCTTTCCTTCTTTTTCTGGGAGTTTCTTGTTTCAAATCTTTAGATATTTAACTGTGCCACTTGTCTACTGAATTGAATGAGCTCTGTTCTGGTTTATGGATAGTATTTTACCTTTTCTTGGATCCATTTCAAGGAAAAGAATCTGCAATTATACCAGAGAATAGCGGGTGATCTGCTGCTATAAGCTTAATCTTAGTTCGAGTAAAAGGCGAAAACAATAACTAATAGAACTGGGAAGCTTCCATTCATGCTAAGCTTCCATTCATGCTTACTATGTATAGTCTATACTATTTAGTTTATCATTGTAACATGGCTTTGAATCTGAAAAGTTATCTATAAGTTATGCAACACTTATATATGCTCTTAGCTCAAGTGCTCTGCTTAAACTTAGAGAACATACACATAACATAGTACACTTATTCTATTGCTTAATGATAGTTATTCACTATCTGCTTTGTGTGTAATATGATGATCACTATTGAATCAACGTCATGTATTGTTCATTTCTATTATACATATATACCATAAGATTGGTACAGATGTTCGTTCCTTGTACTCTTTCGATTTAGATTTGTCCTTTTGTTTCTTATTAATTTCATCGAGTTTTTCTGAGTCTGAAGTTTCCCAAAAAAATTGCAGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGTCTTTTTACCTCTTGGTTCCATTCTAACTTAATACTACTTTTGAGTTTTGATGTAGGGATGTTTCTGTACTTCTGTTATTTGTGTTTGATGTCTTATGCAGCCGTTGGGTAAGACCGTTAGTGTGTTTAACCAAGCTGGTTAAGGTCATTACGTTTAGCAGTTGGAACTAGTCAGTTGGTTCGCTTCAGTTAGCTCTTTATAGTATAAATATTCATTGTTTTGGTTGTATGAAATTCATTCCCCTCAGCTACACCAATTTTCTAGTGAATAAGTAAGGGAGGCTTTTGAAATTCATCCCCCAAATGGGTCAGTATGCGGAACCACTGTTTGAAAGATATTTTAGAAACTTGGAGAGGATACTCCTATTCCTTTTGCAATTCATTATTGTTCTTTTCCTGGGGACCTAATATTCAATCAATTAAACCAGTCATATTGAAGTTGAATTATAATTCATGTTGGGAGTGAGAATTTGTAAAACCCATGATAGACAGCAAGTCACCCAAAAGTATAGTCGTGTAGAAAAAGGGAAAAAGGGAGACTGAGTGATATAAGTACGTGAGGATTGGCAGGCGTGTGCGTTATGATTATGTGGCCATATATTATGGTTAGTTATACTTTTTGTGTATGTTGAAGGCTGCTTATGGCAAAGAGGAGGCTATCTTTTTGCATTTTGCTCAATTGTAGCTCCTTCGGGCATAGTGGAGAGGAGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAACAGTTAATAGATAATTTGAGGCCTATCGATCCCTGAGTCACCAGGAAAGCTCACACTTCATGAAAGTAAACAAGACTTGGCCAGAAAGGTTATTGGTTAGTGGGACTGACCATTGTGTTAGAAGGTTGTAGATGTAATCTAAAAGAATTTTGGGTGGACAGCATAAAGTTTAAATGTGAATGCTCGAATTTTCTTGGATTAGTTGTGGTTTATTTTTGTCTTGCATAGTTGTAGGTTTTGTGAGAAGGAAATAACTTGAGCAAGACCGTAGTTGTTAAAATAATGCGGTCAGCCAGGTCTGACAGCAGCCAGCTCTAAACTGTTCCAACTTCATGATGTTTGTCGTGATTCAGCCTTCTAGTTTAACTTGATTGACTGCATAAGCTGAAATGGGGCCTCATCATCATGCCCCTAAATTTCCTGAGTCAATGAGGACATCGAACTTAAGGTTACGTGGCTATCATATTTTTCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGTGATAGAATAGTCATAAATTGCCTTCCAGAAAGTTCAAAATTAGACACTGTTCATCTCTAAGCTAAGAACATGACATAAAGATATAATATTCATCTTTTTTATATATTGTAAACAGTTCTCCGTCTCACAATCTTCGTGATGATCAACAATTTTTACAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGGTATGAAGCTTGCTTTTTAACTTGCTGCTAAATGTGTACGGAAATGTTTTAGTTTTACCATGGCATTTTCTCTTGCGTCACGGTGATCAAAGTGCATCTGATTAGATTGGGGGTCTTGAATTTACTTTTGACTGTGCTACTTCAAGTGGTGTTTCACCGTTAGTCAAAAGTTATTTAGCTGCTTGAATTGAACAATGTTTGGCCAGTGGCATTTAGCGACTGCTATAAGTGACAGAATTTAGATTCGAGTCTCTAGTCTCTTAGAATTTTGTTGTTACAACGGATGAATAGCGATGAGAATGAATGATGTAAGTGATGCTATGTTCCATCTTATGTGCAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTGTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCACCCTCATAAAAGGGCACCATAATAGGTTATCAGGTGTTTATCTAATGGCCCCAAGGGGTGGCTCCGTTGGCAGGGGCTTGGGGTCTGTTGTTATACCAGCTTAATGATCCAAAACTCAAGCCTTCGGGTGAGCTTAATACCAAAAACCCTTGATGTCGCCCGGATTCTGGCCTTGGGCGGGCATCGGTGCCCTTGGGTATAGAGGAACGAAGTTCTAACTCCCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGCAAAATTGCG

mRNA sequence

CGGAGGGGGTATTAGAGATCCGTTGGAGAATCAGAGAGATGAGTGTAGAAGGGTCCGAAGATGTAAGTGGTGAACAAAGTTTGTATATTAATAGCAATTGGCAGCTCAATTTTCTCTCGCCGCCGATCTCGTTTTTCTTCTTCATTTCCGGAACCGGAATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTGTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCACCCTCATAAAAGGGCACCATAATAGGTTATCAGGTGTTTATCTAATGGCCCCAAGGGGTGGCTCCGTTGGCAGGGGCTTGGGGTCTGTTGTTATACCAGCTTAATGATCCAAAACTCAAGCCTTCGGGTGAGCTTAATACCAAAAACCCTTGATGTCGCCCGGATTCTGGCCTTGGGCGGGCATCGGTGCCCTTGGGTATAGAGGAACGAAGTTCTAACTCCCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGCAAAATTGCG

Coding sequence (CDS)

ATGAGTGTAGAAGGGTCCGAAGATGTAAGTGGTGAACAAAGTTTGTATATTAATAGCAATTGGCAGCTCAATTTTCTCTCGCCGCCGATCTCGTTTTTCTTCTTCATTTCCGGAACCGGAATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAA

Homology

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BLAST of CmoCh13G003480 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 5.9e-116
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

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BLAST of CmoCh13G003480 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 6.5e-107
Identity = 192/210 (91.43%), Postives = 200/210 (95.24%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF++TA  IYKKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCC 251
           ESYGIKVGY  IPG SGG   +++Q GGCC
Sbjct: 181 ESYGIKVGY-AIPGQSGGAGSSSSQGGGCC 209

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BLAST of CmoCh13G003480 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 2.7e-105
Identity = 191/210 (90.95%), Postives = 200/210 (95.24%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF++TA  IYKKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCC 251
           ESYGIKVGY  +PG SGG  G+++Q GGCC
Sbjct: 181 ESYGIKVGY-VVPGQSGGA-GSSSQGGGCC 208

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BLAST of CmoCh13G003480 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.5e-103
Identity = 183/211 (86.73%), Postives = 197/211 (93.36%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ES GIK+GYG   G +GGRDGT +Q GGCCG
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

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BLAST of CmoCh13G003480 vs. Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-99
Identity = 184/213 (86.38%), Postives = 190/213 (89.20%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IYKKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYG-GIPGPSGGR--DGTTAQSGGCC 251
           ESYGIKVGYG G  GP   +  +G   +S  CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

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BLAST of CmoCh13G003480 vs. TrEMBL
Match: V4MRB1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025789mg PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 4.5e-115
Identity = 208/216 (96.30%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 36  ISGTGMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPI 95
           IS T MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPI
Sbjct: 95  ISSTSMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI 154

Query: 96  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 155
           KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM
Sbjct: 155 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 214

Query: 156 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGV 215
           LIGNKCDLAHRRAVSTEEGEQFA+EHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGV
Sbjct: 215 LIGNKCDLAHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 274

Query: 216 FDVSNESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           FDVSNESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 275 FDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 310

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BLAST of CmoCh13G003480 vs. TrEMBL
Match: A0A0A0LYF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172570 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 3.8e-114
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCC 251
           ESYGIKVGYGGIPGPSGGRDG TAQSGGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGATAQSGGCC 210

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BLAST of CmoCh13G003480 vs. TrEMBL
Match: R0F783_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005730mg PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.6e-114
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. TrEMBL
Match: D7MC22_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493160 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.6e-114
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. TrEMBL
Match: A0A087GQP7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G210200 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.6e-114
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 418.3 bits (1074), Expect = 3.3e-117
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 377.1 bits (967), Expect = 8.5e-105
Identity = 183/211 (86.73%), Postives = 197/211 (93.36%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ES GIK+GYG   G +GGRDGT +Q GGCCG
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A)

HSP 1 Score: 333.6 bits (854), Expect = 1.1e-91
Identity = 168/212 (79.25%), Postives = 184/212 (86.79%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAY FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ ITID+KPIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHLASWLE+ARQHA+ NMT MLIGNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAF++TAATIYK+IQDGV D +N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQS-GGCCG 252
           E        G  PGP GG+D +++Q   GCCG
Sbjct: 181 EP-------GITPGPFGGKDASSSQQRRGCCG 205

[Close]

BLAST of CmoCh13G003480 vs. TAIR10
Match: AT4G18430.1 (AT4G18430.1 RAB GTPase homolog A1E)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-49
Identity = 102/209 (48.80%), Postives = 130/209 (62.20%), Query Frame = 1


Query: 43  YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIWDT 102
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K IK Q+WDT
Sbjct: 10  YDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQLWDT 69

Query: 103 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 162
           AGQE +R+IT +YYRGA GALLVYDITR  TF ++  WL++ R H +AN+ IML+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGNKAD 129

Query: 163 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSNES 222
           L H RAV TEE   F++   + FME SA  A NVE+AF      IY+ +     D + + 
Sbjct: 130 LRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSRKALDGTGDP 189

Query: 223 YGIKVGYGGIPGPSGGRDGTTA-QSGGCC 251
             +  G        G +D  TA +S GCC
Sbjct: 190 MSLPKGQ---TIDIGNKDDVTAVKSSGCC 215

[Close]

BLAST of CmoCh13G003480 vs. TAIR10
Match: AT5G45750.1 (AT5G45750.1 RAB GTPase homolog A1C)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-49
Identity = 98/208 (47.12%), Postives = 131/208 (62.98%), Query Frame = 1


Query: 43  YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIWDT 102
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K IK QIWDT
Sbjct: 10  YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDT 69

Query: 103 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 162
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H + N+ +ML+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSD 129

Query: 163 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSNES 222
           L H  AV TE+ + FA++  L FME SA  A NVE AF +    I+  +     + ++ES
Sbjct: 130 LRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASES 189

Query: 223 YGIKVGYGGIPGPSGGRDGTTAQSGGCC 251
             +      I     G+D +  + GGCC
Sbjct: 190 ANVPSKGDKI---DIGKDVSAVKKGGCC 214

[Close]

BLAST of CmoCh13G003480 vs. NCBI nr
Match: gi|567221272|ref|XP_006414265.1| (hypothetical protein EUTSA_v10025789mg [Eutrema salsugineum])

HSP 1 Score: 422.2 bits (1084), Expect = 6.5e-115
Identity = 208/216 (96.30%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 36  ISGTGMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPI 95
           IS T MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPI
Sbjct: 95  ISSTSMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI 154

Query: 96  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 155
           KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM
Sbjct: 155 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 214

Query: 156 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGV 215
           LIGNKCDLAHRRAVSTEEGEQFA+EHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGV
Sbjct: 215 LIGNKCDLAHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 274

Query: 216 FDVSNESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           FDVSNESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 275 FDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 310

[Close]

BLAST of CmoCh13G003480 vs. NCBI nr
Match: gi|449443494|ref|XP_004139512.1| (PREDICTED: ras-related protein RABB1c [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 5.5e-114
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCC 251
           ESYGIKVGYGGIPGPSGGRDG TAQSGGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGATAQSGGCC 210

[Close]

BLAST of CmoCh13G003480 vs. NCBI nr
Match: gi|15235981|ref|NP_193450.1| (RAB GTPase homolog B1C [Arabidopsis thaliana])

HSP 1 Score: 418.3 bits (1074), Expect = 9.4e-114
Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+T+Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. NCBI nr
Match: gi|702319792|ref|XP_010052499.1| (PREDICTED: ras-related protein RABB1c [Eucalyptus grandis])

HSP 1 Score: 417.5 bits (1072), Expect = 1.6e-113
Identity = 206/211 (97.63%), Postives = 209/211 (99.05%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG  +QSGGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGVASQSGGCCG 211

[Close]

BLAST of CmoCh13G003480 vs. NCBI nr
Match: gi|567915337|ref|XP_006449982.1| (hypothetical protein CICLE_v10016687mg [Citrus clementina])

HSP 1 Score: 417.2 bits (1071), Expect = 2.1e-113
Identity = 205/211 (97.16%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 101 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 160
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 161 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSN 220
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 221 ESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 252
           ESYGIKVGYGGIPGPSGGRDG+++Q+GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCG 211

The following BLAST results are available for this feature:

BLAST of CmoCh13G003480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1C_ARATH	5.9e-116	97.63	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2B_MAIZE	6.5e-107	91.43	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB2A_MAIZE	2.7e-105	90.95	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1	[more]
RAB1B_ARATH	1.5e-103	86.73	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
YPTV4_VOLCA	1.3e-99	86.38	GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1	[more]

BLAST of CmoCh13G003480 vs. TrEMBL


Match Name	E-value	Identity	Description
V4MRB1_EUTSA	4.5e-115	96.30	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025789mg PE=4 SV=1	[more]
A0A0A0LYF8_CUCSA	3.8e-114	98.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172570 PE=4 SV=1	[more]
R0F783_9BRAS	6.6e-114	97.63	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005730mg PE=4 SV=1	[more]
D7MC22_ARALL	6.6e-114	97.63	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A087GQP7_ARAAL	6.6e-114	97.63	Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G210200 PE=4 SV=1	[more]

BLAST of CmoCh13G003480 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17170.1	3.3e-117	97.63	RAB GTPase homolog B1C	[more]
AT4G35860.1	8.5e-105	86.73	GTP-binding 2	[more]
AT4G17160.1	1.1e-91	79.25	RAB GTPase homolog B1A	[more]
AT4G18430.1	1.0e-49	48.80	RAB GTPase homolog A1E	[more]
AT5G45750.1	1.7e-49	47.12	RAB GTPase homolog A1C	[more]

BLAST of CmoCh13G003480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567221272\|ref\|XP_006414265.1\|	6.5e-115	96.30	hypothetical protein EUTSA_v10025789mg [Eutrema salsugineum]	[more]
gi\|449443494\|ref\|XP_004139512.1\|	5.5e-114	98.57	PREDICTED: ras-related protein RABB1c [Cucumis sativus]	[more]
gi\|15235981\|ref\|NP_193450.1\|	9.4e-114	97.63	RAB GTPase homolog B1C [Arabidopsis thaliana]	[more]
gi\|702319792\|ref\|XP_010052499.1\|	1.6e-113	97.63	PREDICTED: ras-related protein RABB1c [Eucalyptus grandis]	[more]
gi\|567915337\|ref\|XP_006449982.1\|	2.1e-113	97.16	hypothetical protein CICLE_v10016687mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0030100	regulation of endocytosis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005768	endosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003480.1	CmoCh13G003480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 48..208 score: 1.3
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 47..200 score: 1.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 41..226 score: 6.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 42..219 score: 3.91
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 88..110 score: 4.7E-42coord: 150..163 score: 4.7E-42coord: 47..68 score: 4.7E-42coord: 185..207 score: 4.7E-42coord: 70..86 score: 4.7
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 39..251 score: 4.1E
None	No IPR available	PANTHER	PTHR24073:SF545	RAS-RELATED PROTEIN RABB1C	coord: 39..251 score: 4.1E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 44..210 score: 7.3
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 49..210 score: 7.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 47..210 score: 7.1E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 52..251 score: 3.
None	No IPR available	PROFILE	PS51419	RAB	coord: 42..250 score: 35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G003480	CmaCh13G003270	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003480	CmaCh18G006260	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003480	Cla011016	Watermelon (97103) v1	cmowmB189
CmoCh13G003480	ClCG01G011390	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003480	CSPI01G15250	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003480	Lsi02G011760	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003480	Cp4.1LG10g12550	Cucurbita pepo (Zucchini)	cmocpeB189
CmoCh13G003480	Cp4.1LG20g06700	Cucurbita pepo (Zucchini)	cmocpeB204
CmoCh13G003480	Cla97C01G011040	Watermelon (97103) v2	cmowmbB192
CmoCh13G003480	Bhi08G000603	Wax gourd	cmowgoB0257
CmoCh13G003480	CsGy1G015030	Cucumber (Gy14) v2	cgybcmoB072
CmoCh13G003480	Carg24380	Silver-seed gourd	carcmoB0059
CmoCh13G003480	Carg27225	Silver-seed gourd	carcmoB0675

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G003480	CmoCh18G006130	Cucurbita moschata (Rifu)	cmocmoB167

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003480	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003480	Wax gourd	cmowgoB0270
CmoCh13G003480	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003480	Cucumber (Chinese Long) v2	cmocuB206