CmoCh12G007910 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G007910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRib small subunit 3
LocationCmo_Chr12 : 6620547 .. 6621080 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAAAGGATCAAACGCTTTGACTTTGTCTCCTGGGATCCCCCACAGTTTTGGTTTGAGAGCCGTGTGACGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTGAGTCTGCGTTGGTGAATAGAAGCCCCCCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTGACTCTATTTATTATTATGGTAAATCACTGTATCAAGATGTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGAGATTGACCTTTGCCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACAACGCTCAAAATCCAAACCCGGAAAGGATCAGGGCCGATGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGAGGATACAAAAGAAGAACGAAACAAAGTGAGAGGCCGGGAGGCAGAGAAAAGAATGGAGTCGATGATCAGGCTCGACGACTGA

mRNA sequence

ATGGGGCAAAGGATCAAACGCTTTGACTTTGTCTCCTGGGATCCCCCACAGTTTTGGTTTGAGAGCCGTGTGACGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTGAGTCTGCGTTGGTGAATAGAAGCCCCCCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTGACTCTATTTATTATTATGGTAAATCACTGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACAACGCTCAAAATCCAAACCCGGAAAGGATCAGGGCCGATGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGAGGATACAAAAGAAGAACGAAACAAAGTGAGAGGCCGGGAGGCAGAGAAAAGAATGGAGTCGATGATCAGGCTCGACGACTGA

Coding sequence (CDS)

ATGGGGCAAAGGATCAAACGCTTTGACTTTGTCTCCTGGGATCCCCCACAGTTTTGGTTTGAGAGCCGTGTGACGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTGAGTCTGCGTTGGTGAATAGAAGCCCCCCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTGACTCTATTTATTATTATGGTAAATCACTGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACAACGCTCAAAATCCAAACCCGGAAAGGATCAGGGCCGATGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGAGGATACAAAAGAAGAACGAAACAAAGTGAGAGGCCGGGAGGCAGAGAAAAGAATGGAGTCGATGATCAGGCTCGACGACTGA
Homology
[Close]
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-30
Identity = 70/113 (61.95%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 62  SIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRGLK 121
           S YYYGKSL                           CIILHFPK TFIHFFLPRRP  LK
Sbjct: 24  SDYYYGKSLYQDVNLRSYFSSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLK 83

Query: 122 QRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           +R KS+PGKD+GRWWAFGKVGPIGCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 84  RRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDR 136

[Close]
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-30
Identity = 70/113 (61.95%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 62  SIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRGLK 121
           S YYYGKSL                           CIILHFPK TFIHFFLPRRP  LK
Sbjct: 24  SDYYYGKSLYQDVNLRSYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLK 83

Query: 122 QRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           +R KS+PGKD+GRWWAFGKVGPIGCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 84  RRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDR 136

[Close]
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-29
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 1 

Query: 71  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEER 130
           CIILHFPK TFIHFFLPRRPR LK+  KS+PGK++ RWW FGKVGPIGCLHS++DT+EER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEER 119

Query: 131 NKVRGREAEKRMESMIRLDD 151
           N+V GR A KR+ES IRLDD
Sbjct: 120 NEVGGRGAGKRVES-IRLDD 138

[Close]
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-29
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 71  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEER 130
           CIILHFPK TFIHFFLPRRPR LK+R KS+P K++GRW AFGKVGPIGCLHSS+ T+EER
Sbjct: 59  CIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEER 118

Query: 131 NKVRGREAEKRMESMIRLDD 151
           N+VRGR A KR+ES IRLDD
Sbjct: 119 NEVRGRGAGKRVES-IRLDD 137

[Close]
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-29
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 1 

Query: 32  FGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPR 91
           F E++    V +    +   GS      +   +  G+  CIILHFPK TFIHFFLPRRPR
Sbjct: 23  FSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGR--CIILHFPKRTFIHFFLPRRPR 82

Query: 92  GLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD 151
            LK+R K++PGK++GRWW  FGK GPI CLHSS+DT+EERN+VRGR A KR+ES IRLDD
Sbjct: 83  RLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVES-IRLDD 139

[Close]
BLAST of CmoCh12G007910 vs. TrEMBL
Match: R4IUT2_VICFA (Uncharacterized protein OS=Vicia faba GN=rps3 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.3e-56
Identity = 119/178 (66.85%), Postives = 129/178 (72.47%), Query Frame = 1 

Query: 1   MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVA 60
           MGQRIKRFDFVS D PQ  FESRV GDYPARFGEHF SALVN SP   QERSG SHGGV 
Sbjct: 1   MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGEHFLSALVNGSPSIKQERSGYSHGGVT 60

Query: 61  IDSIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRG 120
           IDSIYYYGK +                           CI++HFPK TFIHFFLPRRPR 
Sbjct: 61  IDSIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRR 120

Query: 121 LKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD 151
           LK+R KS+PGK++GRWWAFGKVGPIGCLHSS   +EERN+VRGR A KR+ES IRLDD
Sbjct: 121 LKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKEEERNEVRGRRAGKRVES-IRLDD 177

[Close]
BLAST of CmoCh12G007910 vs. TrEMBL
Match: A0A141NB76_ORYMI (Ribosomal protein S3 OS=Oryza minuta GN=rps3 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.9e-45
Identity = 102/166 (61.45%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 10  FVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGK 69
           FV  DPPQ  FESRV GDY ARF EH          PP Q+RSGSSHG   IDSIYYYGK
Sbjct: 587 FVPRDPPQVGFESRVMGDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSGTIDSIYYYGK 646

Query: 70  SL---------------------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKP 129
           SL                           CIILHFPK TFIHFFLPRRP  LK+R KS+P
Sbjct: 647 SLYQDVNLRSYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRP 706

Query: 130 GKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GKD+GRWWAFGKVGPIGCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 707 GKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDR 752

[Close]
BLAST of CmoCh12G007910 vs. TrEMBL
Match: A0A0E0DCF3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 26  GDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL-------------- 85
           GDY ARF EH          PP Q+RSGSSHG V IDSIYYYGKSL              
Sbjct: 2   GDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYFSSIR 61

Query: 86  -------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPI 145
                        CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPI
Sbjct: 62  PPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPI 121

Query: 146 GCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 122 GCLHSSEGTEEERNEVRGRGAGKRVESIDR 151

[Close]
BLAST of CmoCh12G007910 vs. TrEMBL
Match: Q2QPL4_ORYSJ (Mitochondrial ribosomal protein S3, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g34070 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 26  GDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL-------------- 85
           GDY ARF EH          PP Q+RSGSSHG V IDSIYYYGKSL              
Sbjct: 2   GDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYFSSIR 61

Query: 86  -------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPI 145
                        CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPI
Sbjct: 62  PPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPI 121

Query: 146 GCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 122 GCLHSSEGTEEERNEVRGRGAGKRVESIDR 151

[Close]
BLAST of CmoCh12G007910 vs. TrEMBL
Match: Q2QPK8_ORYSJ (Mitochondrial ribosomal protein S3, putative OS=Oryza sativa subsp. japonica GN=LOC_Os12g34130 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 26  GDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL-------------- 85
           GDY ARF EH          PP Q+RSGSSHG V IDSIYYYGKSL              
Sbjct: 2   GDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYFSSIR 61

Query: 86  -------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPI 145
                        CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPI
Sbjct: 62  PPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPI 121

Query: 146 GCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 122 GCLHSSEGTEEERNEVRGRGAGKRVESIDR 151

[Close]
BLAST of CmoCh12G007910 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-31
Identity = 69/122 (56.56%), Postives = 86/122 (70.49%), Query Frame = 1 

Query: 30  ARFGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRR 89
           +RF E++    V +    +   GS      +   +  G+  CIILHFPK TFIHFFLPRR
Sbjct: 21  SRFSEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGR--CIILHFPKRTFIHFFLPRR 80

Query: 90  PRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRL 149
           PR LK+R K++PGK++GRWW  FGK GPI CLHSS+DT+EERN+VRGR A KR+ES IRL
Sbjct: 81  PRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVES-IRL 139

Query: 150 DD 151
           DD
Sbjct: 141 DD 139

[Close]
BLAST of CmoCh12G007910 vs. NCBI nr
Match: gi|442803159|gb|AGC78894.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 119/178 (66.85%), Postives = 129/178 (72.47%), Query Frame = 1 

Query: 1   MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVA 60
           MGQRIKRFDFVS D PQ  FESRV GDYPARFGEHF SALVN SP   QERSG SHGGV 
Sbjct: 1   MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGEHFLSALVNGSPSIKQERSGYSHGGVT 60

Query: 61  IDSIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRG 120
           IDSIYYYGK +                           CI++HFPK TFIHFFLPRRPR 
Sbjct: 61  IDSIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRR 120

Query: 121 LKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD 151
           LK+R KS+PGK++GRWWAFGKVGPIGCLHSS   +EERN+VRGR A KR+ES IRLDD
Sbjct: 121 LKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKEEERNEVRGRRAGKRVES-IRLDD 177

[Close]
BLAST of CmoCh12G007910 vs. NCBI nr
Match: gi|1016471133|ref|YP_009241985.1| (ribosomal protein S3 (mitochondrion) [Oryza minuta])

HSP 1 Score: 189.1 bits (479), Expect = 5.5e-45
Identity = 102/166 (61.45%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 10  FVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGK 69
           FV  DPPQ  FESRV GDY ARF EH          PP Q+RSGSSHG   IDSIYYYGK
Sbjct: 587 FVPRDPPQVGFESRVMGDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSGTIDSIYYYGK 646

Query: 70  SL---------------------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKP 129
           SL                           CIILHFPK TFIHFFLPRRP  LK+R KS+P
Sbjct: 647 SLYQDVNLRSYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRP 706

Query: 130 GKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GKD+GRWWAFGKVGPIGCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 707 GKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDR 752

[Close]
BLAST of CmoCh12G007910 vs. NCBI nr
Match: gi|77556439|gb|ABA99235.1| (Mitochondrial ribosomal protein S3, putative, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 171.8 bits (434), Expect = 9.2e-40
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 26  GDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL-------------- 85
           GDY ARF EH          PP Q+RSGSSHG V IDSIYYYGKSL              
Sbjct: 2   GDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYFSSIR 61

Query: 86  -------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPI 145
                        CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPI
Sbjct: 62  PPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPI 121

Query: 146 GCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 122 GCLHSSEGTEEERNEVRGRGAGKRVESIDR 151

[Close]
BLAST of CmoCh12G007910 vs. NCBI nr
Match: gi|77556488|gb|ABA99284.1| (Mitochondrial ribosomal protein S3, putative [Oryza sativa Japonica Group])

HSP 1 Score: 171.8 bits (434), Expect = 9.2e-40
Identity = 92/150 (61.33%), Postives = 100/150 (66.67%), Query Frame = 1 

Query: 26  GDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL-------------- 85
           GDY ARF EH          PP Q+RSGSSHG V IDSIYYYGKSL              
Sbjct: 2   GDYLARFREHVYVVCAGEWKPPPQKRSGSSHGSVTIDSIYYYGKSLYQDVNLRSYFSSIR 61

Query: 86  -------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPI 145
                        CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPI
Sbjct: 62  PPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPI 121

Query: 146 GCLHSSEDTKEERNKVRGREAEKRMESMIR 148
           GCLHSSE T+EERN+VRGR A KR+ES+ R
Sbjct: 122 GCLHSSEGTEEERNEVRGRGAGKRVESIDR 151

[Close]
BLAST of CmoCh12G007910 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-37
Identity = 75/80 (93.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 71  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEER 130
           CIILHFPKITFIHFFLPRRPRGLK+R+KSKPGKDQGRWWAFGKVGPIGCLHSS+DT+EER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 131 NKVRGREAEKRMESMIRLDD 151
           NKVRGREAEKR+ESMIRLDD
Sbjct: 120 NKVRGREAEKRVESMIRLDD 139

The following BLAST results are available for this feature:
BLAST of CmoCh12G007910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT03_MAIZE1.7e-3061.95Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1[more]
RT03_ORYSJ1.7e-3061.95Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3... [more]
RT03_OENBE5.6e-2976.25Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2[more]
RT03_PETHY7.3e-2978.75Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1[more]
RT03_ARATH9.5e-2956.67Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3[more]
BLAST of CmoCh12G007910 vs. TrEMBL
Match NameE-valueIdentityDescription
R4IUT2_VICFA8.3e-5666.85Uncharacterized protein OS=Vicia faba GN=rps3 PE=3 SV=1[more]
A0A141NB76_ORYMI3.9e-4561.45Ribosomal protein S3 OS=Oryza minuta GN=rps3 PE=3 SV=1[more]
A0A0E0DCF3_9ORYZ6.4e-4061.33Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1[more]
Q2QPL4_ORYSJ6.4e-4061.33Mitochondrial ribosomal protein S3, putative, expressed OS=Oryza sativa subsp. j... [more]
Q2QPK8_ORYSJ6.4e-4061.33Mitochondrial ribosomal protein S3, putative OS=Oryza sativa subsp. japonica GN=... [more]
BLAST of CmoCh12G007910 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00090.18.3e-3156.56ATMG00090.1 structural constituent of ribosome;protein binding[more]
BLAST of CmoCh12G007910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|442803159|gb|AGC78894.1|1.2e-5566.85hypothetical protein (mitochondrion) [Vicia faba][more]
gi|1016471133|ref|YP_009241985.1|5.5e-4561.45ribosomal protein S3 (mitochondrion) [Oryza minuta][more]
gi|77556439|gb|ABA99235.1|9.2e-4061.33Mitochondrial ribosomal protein S3, putative, expressed [Oryza sativa Japonica G... [more]
gi|77556488|gb|ABA99284.1|9.2e-4061.33Mitochondrial ribosomal protein S3, putative [Oryza sativa Japonica Group][more]
gi|295311706|ref|YP_003587365.1|3.3e-3793.75ribosomal protein S3 [Cucurbita pepo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007910.1CmoCh12G007910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G007910CmaCh12G007600Cucurbita maxima (Rimu)cmacmoB177
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G007910CmoCh13G003010Cucurbita moschata (Rifu)cmocmoB135
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G007910Cucumber (Chinese Long) v3cmocucB0172
CmoCh12G007910Watermelon (97103) v2cmowmbB145
CmoCh12G007910Wax gourdcmowgoB0214
CmoCh12G007910Cucumber (Gy14) v1cgycmoB0593
CmoCh12G007910Wild cucumber (PI 183967)cmocpiB148
CmoCh12G007910Cucumber (Chinese Long) v2cmocuB148
CmoCh12G007910Watermelon (Charleston Gray)cmowcgB138
CmoCh12G007910Watermelon (97103) v1cmowmB154
CmoCh12G007910Bottle gourd (USVL1VR-Ls)cmolsiB158
CmoCh12G007910Cucumber (Gy14) v2cgybcmoB054
CmoCh12G007910Melon (DHL92) v3.6.1cmomedB151