CmoCh12G002110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G002110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chloroplast tocopherol cyclase
Location	Cmo_Chr12 : 1379162 .. 1388503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGACGAGAGTGAACACAATAGACTTAATTTGTCTGCGAGTAGTTATTGATAGAGATTTATTTGTTCTTTTATCTCATCCAAATCTTAATATTGACCGGACCAAGGTGATCCTGCGACTGTGATTCAGTTTCTTCAGGCCCCTCGCAATTCATCCTTGCCATGCAGGCAGATTTTGATCCACAAAATTATATATAGTGCACGACTCTCGCCCGAATTCATCTTGTTCCATTTTTTGGCAATTGAGATGGATGCAACTGCTTGCAATCTACCGTTGTGTGGAATTCATCACTTCTACTCCAATTCAATGGAAGTTCAAGCTGGAAAGTCCATGTTCGCGGTGAAGGTTCCTCAATCTTTGAAGTCCAGCTCATTTCGTCATCGATGGGGTGGTTCTTCGAAGCTAAAGTTGAAATCAAGATCGAGAATCCGAGTATTGGCTTCCAGTTCGAACTCTGTGTATGAATCTTCTGCGTCGGCCAAAATTGAGAACGATGATGACGGAGGTCTTGTTTGCCCTCCTGGCTATCAGCCCACGCCAGCTAATCGCGAGCTGCGGACTCCTCACAGCGGGTAAAACGCTGTCTAAATTTTCCATTAACGAAGGTTCACATCTAGCATAAATGTCTTAGTTCCTAATTTCTTGTCAATGCTCACTTGAATGGTTGAGGCGGCTTCACGAATGGGTTGCATGTATCTTTGAACCCCTCATTGTTTTGTATCTGTGCACACTGTTATCTGTATGCATCTTCAATTAAATGCCCAGTGGTCACCATCAACATTCAGGTTCCGTCTCACGAATTGTTTGTTCATCCTCTGTTTTGTAACCAATAACCAACAAATGCTAGAGATACAACAAGTATTCAAAACAAGTTATGTATGGCTTAAAGGGAGCTTATCTCCTCTGATGTAGCAGAAGAAAAGCACCAATTAATGAGAACTATGAGCTGTGCTAAAAGATGGCATAGAAAAATGGAGCAAAAATTGAAGGAAATGTAGAATGAGAGAGCAAAAAATCAGTCGACTATGATTGGAGCCAGTGGAGGTGTGAGAATCCCAAATTGGTTGGGGAGGAGAACGAAACGCCCTTTATATGGGTGTGGAAACCTTTCCTCAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGTCTGAAAGGGAAAGCCCAAAGATGACAATATCTGCTAGCGGTGGCTGAGCTATCGAGGGAAATAGGGAGAAGGCTCCTGAAACGGTAATCAAGTGTGTGAAGATGAGTGAAAGAGAAATAGAAAGTTGTGGACTGAGAGCAGCGGGAGTGGAAGAGTTGGGGAAACTGGGAAGATGCTGGAGCTATTGTAAGAAAGAATGATGATCAAAGTTTAATATTTGTACCTTTAAAGATGAGTTAACTGGTCATAACTCACCAAACTTGAAGGATAAAAGGTTGTTAATGATTTTTTTCCCCTTTTTATCCTTCCTCACAAACAACCTCACATTCTTTGTTTATCAGTAGTTGAACTAGTTTGGGTGTTTCTTTGTTTAAAGGTGGAAGCATACAATGTTTAACTCGATCAGTTACAGTTTCTAGATTCCTTTTGGAGCATTTGAACCTGGTGTAACCTTATTTTTGTTATGTCATCTGAGGTGAATCGTTACTCTTCTTTAGATCATGGCTGCATCATGGTTAATCTCATGGTATATGGTTATGTGGCAATCAATGATTTACATTTTCCAATTTTCCGTACTTCGTATTGAATCAGGTATCACTTTGATGGGAGTACTCGGAAATTCTTTGAAGGTTGGTACTTCAAGGTATCGATTCCACAGAAGAGGCAGAGTTTCTGTTTCATGTACTCTGTGGAGAACCCTGCATTTCCTAAGAAATTAACGACACCCGAAATCGTACAACATGGACCCAGGTTTACAGGAGTTGGAGCACAGATTCTTGGTGCTTATGACAAATACATATGCCAATACTCTGAAGAGTCTCAAAACTTTTGGGGAAGTAAGTTTTGATATCAAACCTATCTTCTTTTCTTAGTTTTCCTTTACTATGCTTCCTTAGTGAGATCATTTCTTTTTAAAAATTGAGGTCTTATTTCATGACAAAAGTATGAGTGGATAAAAACTTCCATATATTTTGGTTGGATTGTAGCTCTTGTTGAGCATTGTGGAGAGGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAATAGTAAATTCATAATTCGAATTCCATCAACTTCATGTCCTTCGAATCTCAGAATACATTTTTAAACGAGGTCTCAACCTCTTTATACAGTCTATGGTTTTCAGATATATTATTCATGTATTTTTTTGAAAAATGACGCTAATGCTGGGTTTTTAATGCATAGGTAGGCATGAACTGAGTCTGGGCAACTGTTTTGCATCTAAAGGAGGGTTCAAGCCTCCAAACAAGGAAGTTCATCCAGAGGTTGAGATGCTTTCTTAGAATGTATTGTTTCATTTAATGTTGAGACTTGGTCTTTTCTTTCTCTCTCTTATAGTCTTATATAAGTTCAATTAATTCATGAGTGATTTGTGTATCTTTTTCGAGAGAAAATTTGTCAGACTGGAATCTCTTCTTGCTTCAACTATTATTGTTTCTGACAGAGGTTGTGAATGACTTTATATTATATTGTGGGCAACCGTTTTTAGGAGTTCAATAAAAAGGTCGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGTGCTCCCTCACTTTTACTTTATTGAGCTTTTAGTACTGTGTTGAGAATCTTTAACTTCAGTTTTTGACCTTAAGATAGCTTCAGTTAAAGTTGAATGCTAATATCTCATGTGGAGTATCCCCAAGGGGCAGCTCTGTGGGTGAAGGCTCGCAGTCTCTAAGGAACACTTATCTTACACTAATTCATCACTGCAGTCTCTACACTAATTCGTCCCCATTTTTTAGAGCTTTTGTGGCTTCTTTAGATCATATACATACTCCTAACACAGTTCAAGGAGCAAACTTTTATGTAAAGCCGCCACTCTAGAAGAATTACATTGTCTTGAAAAAAATAAATGTGAATCCTATGGGTGCAGTTGGATAAAGATGGATTTTTTCAACCAATCACAAACCAAATGGTAGTATAGAGCCATTCAAAACTTGTCTTATAGCCAAACTTTTGGAATCGACTATAAGGAAACATTTGTTCCTGTTGGGAAATGAAATTTTATTCAAGTACTTCTTGCTACAATAAATCTAGATTTATCATTAATTTAACTTGATGTAAAAAAATTCATTTTTTAATAGAGACCTAGTGAAGAAGTGATTATGAGCCTATATCTTGGATTTGAGGACATATATACAACGAAAGGTATGTAAACTGAAGAAATGTATGGATTAAAACAGTCATCTCAAGCTTAGTTCAAAAAGTTTACAAATGTATTGAAGTAAGATGACTATACTCAATATTAATCCAACCAAACCCTATTCATCAAGAATTTTTCACCAAGTAAGATTACTGTGTTCGGAGTATATGTTGATGTTATTATTTTTACAAGAAATGTTTTAGAGTAAATTATTTGGCTCAAGCAACTTCTTTCAAATAAATTTGAAATCAAGACTTGACCAGTAGGAAAGTTATTTACTTAACTCATACTTGTCCAAACATTAGTTTGGCTGTTAATGTGGGAATTAAGTCCATTCCTGAACAAACCTTCTAAAAGTCATATAGAAGTTTTGTATAGAATATTGAGATATTTCAGGAAAGAGCCTCATACTTTTAAAGACTATGAACCAATCTCTAGAGGTGTACACCAATGTAGCTTGGGGAGGTGCTCTTATTGACTGCAAGTCAACTTCAGGTTAGTGCTCGTATGTGTGGGGGAAACTTAGTAACTTGGTGCAGTAAGAAGCAACAGATTGTAGCTGAAAGTAGTGTTAAAGCTGAGTTGCAATCTAGCTCGAGGAATTTGGTTAAAGTGCCTACTCATCGAGCTCAAAGTTAGAATAGTAGGTATCATAGAGCTAATGTGTGATAATCAGTCTGTCATAGCTATTGAAAAAAATCTAATATTTCATGATCAAATGAAGTATGTTGAGATAGACTGCCACTTCATTACTGATAAGATTGAAAACAACACAATAAACCTAAGATATGTGCCTTCACAGCAGCAATTGAATTGGTCAAGCCTTGATGATTACGTTTCCAAGCTAGGAGTGACTAGCATATACCATCTAGCTCGAGGGGAGCATAGAAAATCAAGCTGTAAATTTAATTTTTTATTTATTGTCTTATATAATTGTGTAGCTGTATTTTCTCCTTCCTTTTTAGACTTGGGCTAATTACTGAATTGCTTATTTGGAGTTCTCTGATGGAAATCCTTCTTGTATAAATCTCATTCTATTTCATTCAATGAAAAATTGTTTTCATACATAGCTTCAATAACTAAGAGAAGAACTGCAGCATTTGGGCAGTGAAGCCTTCTTCCTTTTAAAGGACATACTCCTAAAATATTCAGGCTAGAATTGACACAACTATTCCTTCTCCCAGTGAAAAAGTTATGTATGAAGCTAATTGATGTTTGTCTTTTTCTGGAATTCTCATTCGACATGATTTCTTCCAGTAAAATGTAGAGGCTTTTCCTAACTTCTTCCTTTTGAGGTTGGGAAAGGCCACATGCACAAGCATCAATTTCTTTGTGTTTCGACATCAATACAACGCAATGTGGTACCAAATTGTCTTAATTCATGAAATTGCTCTCCCTTCAGGTTTAATCTATGAGTTCTATGTTTAAAGAACTTGTTAATAATTTTATAAAATAATCTTATTTGTTATTATGAGTTATGGTGTTTCCAATCTTTGAAGCTTCCCTGCTTACTGGGAAAAAAAGATTTAAGTTATTCACTCAAAAGGAGACTGGACTTCCTTGAACTAAATGTGTTTTAGGGCTTTAAATCAGTATATCAAGGAGCTCGAAATATTGGTTGTCAAATATTTCTTTGCATTAAAACAATTGTATCTCGGATTCCATCTTATTATTGGGACACTGTTTGACAATGTTCAATGACAGGACAAACTATTTGGAAACTGTAAAAACTGCTCGTTGGGAATACAGTACCCGCCCAGTTTATGGCTGGGGAAATGTTGGATCTAAGCAGAAGTCAACAGCTGGCTGGCTTGCAGCATTTCCAGTATTTGAACCTCATTGGCAAATATGCATGGCAGGAGGGTTATCCACAGGCATGTTCAATCTTTTAATCAGTTTACCTTGGAAATTTGTGTTTGACTTGGTGCATTACTTCTAATTATGAGGAATTCTATATTTAGCGCTGTCCTGGTGCTGGATTTATGGTGAAGAACGATAACTATATATTTTTATGGTATGAGGATTCTGTTATGGTTTCATCTGCATATAGACACGTACATGATACGTACCGATGTAAGTTTATGCATATGTCTATCATGAGAAATTCTATATTTAGCACTGTGCTGGTGCTGGATTGATGGTGAAGAATCGATAACTATATATTTTTATGGTATGAGGATTCTGTTATGGTCCTATATGCATATAGATATATATGATACGTACAGGTGTAAGTTTATGCATATGTCTATTTCGATAGGAAATAGAAACTTTCACTAAAAAGGAGAAAGAGAGAAAAGAACAACCTAAAGACCAAGGAGATGAAGATTCCCTGGCCTAAAAGAGGGATCCTACCAAACACTCTCTATTTATGCTATAAATAATTAGTATATTTATTTAGTTCTCTCTACGGGAACTTGTTCTTTTTCATATTTATGGTTTTAGTTCTGTTTGTGTCAGTTTTTTTGATAATTCATTTGGACTGGGTTGTGGCTTTCCTCTCTTTTATTTGTCTGTTTCATCTTCTTTTCTCCTCCTCCTTGGAGCTTGCACATCTTCTTAGATGAACGTATGCTGTGTAAATTAATATGTAATGGAAATATTGTTTCATATCATGCTGCGCTTTCACCCTAATTTTATTTTCTTGGTAAAAGTTAAAGTTCGGCATATTTCCTGAATTTCTCAATATGAATCTCAGGTTGGATTGAGTGGGAGGACGAAAGATTTGAGTTTGTAAATGCCCCTTCATACTCTGAAAAGAATTGGGGTGGCGGATTTCCCAGAAAATGGTTTTGGGTAATTTTTTTGGCTTTGTGAAGTAAGAAATTATTTGATTCTTTCTAATTCTACAAATTTGAAGTCAAGCACGCTATGCAACATGGCCTAGTAAAAAAATGAGGTTAAAAGAGGGTTGAGTTTTGGAGTTCTTAAATTTGGACAAGAAACCTAGCATCGTGAATCTTGTTAGAAAATTCATAGAAGGATGTCAATAAATTTAACTTTTAGAAATTGAGTTTGCTTTTGACCGGCCCATGCATAGAGGAGTTTCGTCTGTTTTTTACATTCATGAGGCTGTAAAAGATTACACCATCTGTATATTTAATGGGATGAAGTATGCTGTATTTTCTTGCATATTTACGTAGTATATTGCTGGACCTTGTTGCTCGACTGGCTCAAATATTGTTAAACCTTAGCTCCTTTTAACATGCTGCAGGCTCAGTGTAATGTTTTTGAAGGTGCTCGTGGAGAAGTTTCTCTTACGGCTGGTGGAGGTTTGAGACAACTTCCTGGATTGACGGAAACCTTTGAAAATGCTGCATTGGTAATATTATGTGGCTCCTCATTGCGATTTCACTCTCTTTACTCACTCTCATTCACACACACACGCACTGCATTGCTGTGAATGAAATGGTCTCCCCCAACACCCCAAATGCTGTGGACCTACGAACGTGATCCACTCTCTTTATACTTGGAGAGGGACGGTCTTACTTTGAATAGGATTGTTCTATAGGTTGTACAACTTTGTTCTAGAGTTCTCAAAGAGAAGGGGTGGGGGGAATGTGAGATCCCACATTGATTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGAAAATCTCTCTCTAGCAGACGTGTTTTAAAACCTTGAGGGGAAACCCGAGAGGGAAAGTCCAAAGAGGACAATATCCGCTAGTGGTGGGCTTGGGCTGTTATAATTGGTATCAAAGTTAGACGCAGGGCGATGTGCCAGCAAAGACGTTGAGCCCTGAAAGGAGTGGATTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCAAATGCGTTTTAAAACCTTGAGGGGAAGTCCAAAAGGGAAAACTCAAAGAGGACAATTTCTACTAGCGGTGGACTTGGGCCGTTACCGGCAAAGTCGTGGATGGATAGAATTATGCTCGGAAAGGTAGGAAATGTGGGAGTTGGGTGGACATCTTAACCAACAATGATATTTGTGATATTTTAATTGTTGCAGGTTGGAGTCCACTATGATGGAATTTTTTATGAATTCGTGCCATGGAATGGAACTGTTAACTGGGAAATAAGTTCTTGGGGCTATTGGTATATTGCTGCCGAAAATGCAACGCACAAGGTAAATTGTGGATCTCTTTGTTCCAGTCACTGCCCTTCTTTGAGCAATTATAAGATTTCCATCTGATGCATGCAAAAGACTTGATTCTGTTAAAATACAGTCTTTTAGCAAGTAAATAGTAATGTTAAAGGCATACTAACAACGTCAATTGATTAAGATACGCTACACTAAAGAGGTTTAAATTCTTCACCCCTGTGTTTACTCTAAAAAGAATAATGATAAAGCATATCAAAATAGTCTAAAAATCCTTTAAAGCGTTTCCTTTGAAACCCAGAAAATTATGCAAAAGTGAAGATTTTCTTCAAGTATTTTAGCTCGTCTTTGCACAGATTGAATTAGAAGCCAAAACAGACGAGCCTGGTTCACCGTTACGTGCTCCTACAACGGAACGTGGGCTTGACACTGCTTGCAAAGATACTTGTTTTGGTATATTGAAATTGCAAATGTGGGAACGAAGATTTGATGGTAGCAAGGGCAAGGTGACAGTCTTATATTAACTTTTTTCCATTACTCATTGCTTCCATTTGGCTTGCACTTAATCATTATGTACAATTCAAGGGCTAAGTATGTTTCTTTCTAGATTATAGATTATAGATTATTGAATGTTGAATGTTGAAATAGGTTCAAAAAAATTGAAAATTTAGGGATCTATTAGATACAAAATTCAAAGTTTAAGGATCTACGGTACCATTTTTAAGTTTTAAAGATTCATTAGATGTAAAGTTAAAGAACCTTTTTAAGTTTTAAAGATTCATTAGATGTAAAGTTAAAGAACCTTTTTAAGTTTTAAAGATTCATTAGATGTAAAGTTAAAGGACCTGTTAGGCATCTTTTAAATATTAGATACAAACTTAAGGGTCGAGCATTTTTTTTAATAACGTTATCATAAATGTCTCCATATAGGCATGCATGTATACAAGCATAAAATGTAGTCAGTGACATTACCACCCTATGATCTGATCATTCCTTAAGAGGTCTTCATACTAGTTATAAATCCCGATAGTGATTAAAATATCGTGTTAGTATTGGCATAGATTATTCTCTGCAGAATATTTCCCGAACTCTTAGTGGTATACGACAATTGTTCAGGTTAACCTGCTCTTCATTTTTAATAGTTATATCAGTACAATTCTTGATTTGCAGATTGTATTGGATGTCACAAGTAACATGGCGGCATTGGAAGTTGGAGGAGGGCCTTGGTTCAACACCTGGAAGGGAGAAACTACCACCCCAGAGATCCTCAAGCGTGCTCTTACAACACCTATTGATGTGGAACAAGCTTTTAACTTGCTTCCACTCTTCAAACCTCCTGGCTTGTAGACGACAATTACAACAATTACTGCACGTTGTGCTGTGGAAGGAATGAAACGAACCATCAAGGTCGTGCTGGTTCGGGCAACCTTCGTAGCCTATAGTTTAGTCCTCGAACTTCTAAAGTTTTCACGAACAATTTGCAGGGTAGAGCTACTTTTCTATGTTCGGGTTCAGCTCATTTTTAGTTAAAAACATGTGAAAAATAGTTTTTAATTGGAAAGTATATATAAACATCAACTCTCGTGGACCTTGAATGGTTGTTATTATAATTAGCTTGCAAAATAATTATAAAATCGTTTAGGAGGAGAATTCGAGGCCGGCAGAACACGCGGCGAGGTTTGTAATGACGGCGGCGGATACGTTGCCGGGAGGTGGCGGCGGAGAAAGCTGGGTTTCAAGTAATATTAATAAAGCTCATTATGATTATTATTATTTTTTATTTTATTCTACTTTGTTTGGTGTTGTAAGAGGTATAATCGTTGGGAAATTAATGAGGATTAGAGGGGG

mRNA sequence

GTAGGACGAGAGTGAACACAATAGACTTAATTTGTCTGCGAGTAGTTATTGATAGAGATTTATTTGTTCTTTTATCTCATCCAAATCTTAATATTGACCGGACCAAGGTGATCCTGCGACTGTGATTCAGTTTCTTCAGGCCCCTCGCAATTCATCCTTGCCATGCAGGCAGATTTTGATCCACAAAATTATATATAGTGCACGACTCTCGCCCGAATTCATCTTGTTCCATTTTTTGGCAATTGAGATGGATGCAACTGCTTGCAATCTACCGTTGTGTGGAATTCATCACTTCTACTCCAATTCAATGGAAGTTCAAGCTGGAAAGTCCATGTTCGCGGTGAAGGTTCCTCAATCTTTGAAGTCCAGCTCATTTCGTCATCGATGGGGTGGTTCTTCGAAGCTAAAGTTGAAATCAAGATCGAGAATCCGAGTATTGGCTTCCAGTTCGAACTCTGTGTATGAATCTTCTGCGTCGGCCAAAATTGAGAACGATGATGACGGAGGTCTTGTTTGCCCTCCTGGCTATCAGCCCACGCCAGCTAATCGCGAGCTGCGGACTCCTCACAGCGGGTATCACTTTGATGGGAGTACTCGGAAATTCTTTGAAGGTTGGTACTTCAAGGTATCGATTCCACAGAAGAGGCAGAGTTTCTGTTTCATGTACTCTGTGGAGAACCCTGCATTTCCTAAGAAATTAACGACACCCGAAATCGTACAACATGGACCCAGGTTTACAGGAGTTGGAGCACAGATTCTTGGTGCTTATGACAAATACATATGCCAATACTCTGAAGAGTCTCAAAACTTTTGGGGAAGTAGGCATGAACTGAGTCTGGGCAACTGTTTTGCATCTAAAGGAGGGTTCAAGCCTCCAAACAAGGAAGTTCATCCAGAGGAGTTCAATAAAAAGGTCGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGACAAACTATTTGGAAACTGTAAAAACTGCTCGTTGGGAATACAGTACCCGCCCAGTTTATGGCTGGGGAAATGTTGGATCTAAGCAGAAGTCAACAGCTGGCTGGCTTGCAGCATTTCCAGTATTTGAACCTCATTGGCAAATATGCATGGCAGGAGGGTTATCCACAGGCATGTTCAATCTTTTAATCAGTTTACCTTGGAAATTTGTGTTTGACTTGCGCTGTCCTGGTGCTGGATTTATGGTGAAGAACGATAACTATATATTTTTATGGTATGAGGATTCTGTTATGGTTTCATCTGCATATAGACACGTACATGATACGTACCGATCACTGTGCTGGTGCTGGATTGATGGTGAAGAATCGATAACTATATATTTTTATGGTTGGATTGAGTGGGAGGACGAAAGATTTGAGTTTGTAAATGCCCCTTCATACTCTGAAAAGAATTGGGGTGGCGGATTTCCCAGAAAATGGTTTTGGGCTCAGTGTAATGTTTTTGAAGGTGCTCGTGGAGAAGTTTCTCTTACGGCTGGTGGAGGTTTGAGACAACTTCCTGGATTGACGGAAACCTTTGAAAATGCTGCATTGGTTGGAGTCCACTATGATGGAATTTTTTATGAATTCGTGCCATGGAATGGAACTGTTAACTGGGAAATAAGTTCTTGGGGCTATTGGTATATTGCTGCCGAAAATGCAACGCACAAGCTCGTCTTTGCACAGATTGAATTAGAAGCCAAAACAGACGAGCCTGGTTCACCGTTACGTGCTCCTACAACGGAACGTGGGCTTGACACTGCTTGCAAAGATACTTGTTTTGGTATATTGAAATTGCAAATGTGGGAACGAAGATTTGATGGTAGCAAGGGCAAGATTGTATTGGATGTCACAAGTAACATGGCGGCATTGGAAGTTGGAGGAGGGCCTTGGTTCAACACCTGGAAGGGAGAAACTACCACCCCAGAGATCCTCAAGCGTGCTCTTACAACACCTATTGATGTGGAACAAGCTTTTAACTTGCTTCCACTCTTCAAACCTCCTGGCTTGTAGACGACAATTACAACAATTACTGCACGTTGTGCTGTGGAAGGAATGAAACGAACCATCAAGGTCGTGCTGGTTCGGGCAACCTTCGTAGCCTATAGTTTAGTCCTCGAACTTCTAAAGTTTTCACGAACAATTTGCAGGGTAGAGCTACTTTTCTATGTTCGGGTTCAGCTCATTTTTAGTTAAAAACATGTGAAAAATAGTTTTTAATTGGAAAGTATATATAAACATCAACTCTCGTGGACCTTGAATGGTTGTTATTATAATTAGCTTGCAAAATAATTATAAAATCGTTTAGGAGGAGAATTCGAGGCCGGCAGAACACGCGGCGAGGTTTGTAATGACGGCGGCGGATACGTTGCCGGGAGGTGGCGGCGGAGAAAGCTGGGTTTCAAGTAATATTAATAAAGCTCATTATGATTATTATTATTTTTTATTTTATTCTACTTTGTTTGGTGTTGTAAGAGGTATAATCGTTGGGAAATTAATGAGGATTAGAGGGGG

Coding sequence (CDS)

ATGGATGCAACTGCTTGCAATCTACCGTTGTGTGGAATTCATCACTTCTACTCCAATTCAATGGAAGTTCAAGCTGGAAAGTCCATGTTCGCGGTGAAGGTTCCTCAATCTTTGAAGTCCAGCTCATTTCGTCATCGATGGGGTGGTTCTTCGAAGCTAAAGTTGAAATCAAGATCGAGAATCCGAGTATTGGCTTCCAGTTCGAACTCTGTGTATGAATCTTCTGCGTCGGCCAAAATTGAGAACGATGATGACGGAGGTCTTGTTTGCCCTCCTGGCTATCAGCCCACGCCAGCTAATCGCGAGCTGCGGACTCCTCACAGCGGGTATCACTTTGATGGGAGTACTCGGAAATTCTTTGAAGGTTGGTACTTCAAGGTATCGATTCCACAGAAGAGGCAGAGTTTCTGTTTCATGTACTCTGTGGAGAACCCTGCATTTCCTAAGAAATTAACGACACCCGAAATCGTACAACATGGACCCAGGTTTACAGGAGTTGGAGCACAGATTCTTGGTGCTTATGACAAATACATATGCCAATACTCTGAAGAGTCTCAAAACTTTTGGGGAAGTAGGCATGAACTGAGTCTGGGCAACTGTTTTGCATCTAAAGGAGGGTTCAAGCCTCCAAACAAGGAAGTTCATCCAGAGGAGTTCAATAAAAAGGTCGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGACAAACTATTTGGAAACTGTAAAAACTGCTCGTTGGGAATACAGTACCCGCCCAGTTTATGGCTGGGGAAATGTTGGATCTAAGCAGAAGTCAACAGCTGGCTGGCTTGCAGCATTTCCAGTATTTGAACCTCATTGGCAAATATGCATGGCAGGAGGGTTATCCACAGGCATGTTCAATCTTTTAATCAGTTTACCTTGGAAATTTGTGTTTGACTTGCGCTGTCCTGGTGCTGGATTTATGGTGAAGAACGATAACTATATATTTTTATGGTATGAGGATTCTGTTATGGTTTCATCTGCATATAGACACGTACATGATACGTACCGATCACTGTGCTGGTGCTGGATTGATGGTGAAGAATCGATAACTATATATTTTTATGGTTGGATTGAGTGGGAGGACGAAAGATTTGAGTTTGTAAATGCCCCTTCATACTCTGAAAAGAATTGGGGTGGCGGATTTCCCAGAAAATGGTTTTGGGCTCAGTGTAATGTTTTTGAAGGTGCTCGTGGAGAAGTTTCTCTTACGGCTGGTGGAGGTTTGAGACAACTTCCTGGATTGACGGAAACCTTTGAAAATGCTGCATTGGTTGGAGTCCACTATGATGGAATTTTTTATGAATTCGTGCCATGGAATGGAACTGTTAACTGGGAAATAAGTTCTTGGGGCTATTGGTATATTGCTGCCGAAAATGCAACGCACAAGCTCGTCTTTGCACAGATTGAATTAGAAGCCAAAACAGACGAGCCTGGTTCACCGTTACGTGCTCCTACAACGGAACGTGGGCTTGACACTGCTTGCAAAGATACTTGTTTTGGTATATTGAAATTGCAAATGTGGGAACGAAGATTTGATGGTAGCAAGGGCAAGATTGTATTGGATGTCACAAGTAACATGGCGGCATTGGAAGTTGGAGGAGGGCCTTGGTTCAACACCTGGAAGGGAGAAACTACCACCCCAGAGATCCTCAAGCGTGCTCTTACAACACCTATTGATGTGGAACAAGCTTTTAACTTGCTTCCACTCTTCAAACCTCCTGGCTTGTAG

Homology

[Close]

BLAST of CmoCh12G002110 vs. Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=2 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.8e-100
Identity = 166/231 (71.86%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 70  SVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSI 129
           S+   SAS    N +   +   P Y PT  NRELRTPHSGYHFDG+ RKFFEGWYF+VSI
Sbjct: 42  SISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSI 101

Query: 130 PQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFW 189
           P+KR+SFCFMYSVENPAF + L+  E+  +GPRFTGVGAQILGA DKY+CQY ++S NFW
Sbjct: 102 PEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFW 161

Query: 190 GSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLET 249
           G RHEL LGN F++  G K PNKEV PEEFN++V EGFQ TP WHQG I DDGRT+Y ET
Sbjct: 162 GDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAET 221

Query: 250 VKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           VK+ARWEYSTRPVYGWG+VG+KQKSTAGW AAFPVFEPHWQICMAGGLSTG
Sbjct: 222 VKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTG 272

[Close]

BLAST of CmoCh12G002110 vs. Swiss-Prot
Match: TOCC_ORYSJ (Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.0e-94
Identity = 156/212 (73.58%), Postives = 175/212 (82.55%), Query Frame = 1


Query: 89  VCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQKRQSFCFMYSVENPAFP 148
           V  P Y PTP +R LRTPHSGYH+DG+ R FFEGWYFKVSIP+ RQSFCFMYSVENP F 
Sbjct: 46  VAAPVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFR 105

Query: 149 KKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGSRHELSLGNCFASKGGFK 208
             ++  + V HG RFTGVGAQILGA DKYICQ++E+S NFWGSRHEL LGN F    G  
Sbjct: 106 DGMSDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGST 165

Query: 209 PPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKTARWEYSTRPVYGWGNV 268
           PP  EV P+EF+ +V+EGFQVTP+WHQGFIRDDGR+ Y+  V+TARWEYSTRPVYGWG+V
Sbjct: 166 PPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDV 225

Query: 269 GSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
            SKQKSTAGWLAAFP FEPHWQICMAGGLSTG
Sbjct: 226 TSKQKSTAGWLAAFPFFEPHWQICMAGGLSTG 257

[Close]

BLAST of CmoCh12G002110 vs. Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.8e-92
Identity = 155/230 (67.39%), Postives = 180/230 (78.26%), Query Frame = 1


Query: 71  VYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIP 130
           V   +AS+ + +         P Y PTP +R LRTPHSGYHFDG+ R FFEGWYFKVSIP
Sbjct: 32  VVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARPFFEGWYFKVSIP 91

Query: 131 QKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWG 190
           + RQSFCFMYSVENP F   ++  + + + PRFTGVGAQILGA DKYICQ+SE+S NFWG
Sbjct: 92  ECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYICQFSEKSNNFWG 151

Query: 191 SRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETV 250
           SRHEL LGN F S     PP  EV P++F+++V+EG QVTP+WHQGFIRDDGR+NY+  V
Sbjct: 152 SRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFIRDDGRSNYVPNV 211

Query: 251 KTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           +TARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLSTG
Sbjct: 212 QTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTG 261

[Close]

BLAST of CmoCh12G002110 vs. TrEMBL
Match: A0A0A0LLK5_CUCSA (Tocopherol cyclase OS=Cucumis sativus GN=Csa_2G374670 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 1.5e-156
Identity = 269/302 (89.07%), Postives = 281/302 (93.05%), Query Frame = 1


Query: 1   MDATACNLPLCGIHHFYSNSMEVQAGKSMFAVKVPQSLKSSS-FRHRWGGSSKLKLKSRS 60
           M+ATA NLPLCGIHH     +E Q+GK MF +++PQSLKSSS FR R GGSSKL+LKSRS
Sbjct: 1   MEATAWNLPLCGIHHCSFKLVEAQSGKPMFGLELPQSLKSSSSFRLRSGGSSKLELKSRS 60

Query: 61  R-IRVLASSSNSVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRK 120
             IRVLASSSNSVYES AS+KIE DDDGGLVCPPGY+PTPANRELRTPHSGYHFDGSTRK
Sbjct: 61  TSIRVLASSSNSVYESPASSKIEKDDDGGLVCPPGYRPTPANRELRTPHSGYHFDGSTRK 120

Query: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYI 180
           FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLT  +I QHGPRFTGVGAQILGAYDKYI
Sbjct: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTAVDIAQHGPRFTGVGAQILGAYDKYI 180

Query: 181 CQYSEESQNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFI 240
           CQYSEESQNFWGSRHELSLGN FA+KGGFKPPNKEV PEEFNKKVVEGFQVTPLWHQGFI
Sbjct: 181 CQYSEESQNFWGSRHELSLGNSFATKGGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQGFI 240

Query: 241 RDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300
           RDDGRTNYLETVKTARWEYS+RPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS
Sbjct: 241 RDDGRTNYLETVKTARWEYSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300

[Close]

BLAST of CmoCh12G002110 vs. TrEMBL
Match: X2D409_9ROSI (Tocopherol cyclase (Fragment) OS=Juglans regia PE=2 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.1e-108
Identity = 182/229 (79.48%), Postives = 199/229 (86.90%), Query Frame = 1


Query: 72  YESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQ 131
           YESS++ + +   +      P Y PTP NRELRTPHSGYHFDGS RKFFEGWYFKVSIP+
Sbjct: 7   YESSSTVQGDIQKESSGSVSPAYVPTPPNRELRTPHSGYHFDGSARKFFEGWYFKVSIPE 66

Query: 132 KRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGS 191
           +RQSFCFMYSVENPAFPKKLT  E+ Q GPRFTGVGAQILGA DKYICQYSEESQ FWGS
Sbjct: 67  RRQSFCFMYSVENPAFPKKLTALEVAQRGPRFTGVGAQILGANDKYICQYSEESQYFWGS 126

Query: 192 RHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVK 251
           RHEL LGN F  +   KPP KEV P+EFNK+V+EGFQV+PLWHQGFIRDDGR+NY++TVK
Sbjct: 127 RHELILGNTFVGEKESKPPYKEVPPQEFNKRVLEGFQVSPLWHQGFIRDDGRSNYVDTVK 186

Query: 252 TARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           TARWEYSTRP+YGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG
Sbjct: 187 TARWEYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 235

[Close]

BLAST of CmoCh12G002110 vs. TrEMBL
Match: A0A061GK03_THECC (Tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) isoform 1 OS=Theobroma cacao GN=TCM_037170 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 3.3e-108
Identity = 192/288 (66.67%), Postives = 223/288 (77.43%), Query Frame = 1


Query: 13  IHHFYSNSMEVQAGKSMFAVKVPQSLKSSSFRHRWGGSSKLKLKSRSRIRVLASSSNSVY 72
           +HHF S  +  +   S   VK  QS   + F  R  G   L++  RS  R++A SS +  
Sbjct: 11  LHHFSSCCIGFRPLNSKPTVKFSQSSTFNGFSPR--GLRPLRVGFRSNSRIIACSSVAEP 70

Query: 73  ESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQK 132
           E+  S+     +   +   P Y PTPANR  RTPHSGYHFDG+TR+FFEGWYFKV+IP++
Sbjct: 71  ETGTSSPAA--ESSAVSVNPVYVPTPANRNARTPHSGYHFDGTTRQFFEGWYFKVAIPEQ 130

Query: 133 RQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGSR 192
           RQSFCFMYSVENPAF +KLT  E++QHGPRFTGVGAQILGAYDKYICQY+EESQNFWGSR
Sbjct: 131 RQSFCFMYSVENPAFRRKLTPLEMLQHGPRFTGVGAQILGAYDKYICQYTEESQNFWGSR 190

Query: 193 HELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKT 252
           HEL LGN F +    +PP+KEV P+EFN+KV+EGFQV+PLWHQGFIRDDGRT Y   VKT
Sbjct: 191 HELILGNTFLANKDSRPPSKEVPPQEFNRKVLEGFQVSPLWHQGFIRDDGRTTYANIVKT 250

Query: 253 ARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           ARWEYSTRP+YGWGNVGSKQKSTAGWLAA P+FEPHWQICMAGGLSTG
Sbjct: 251 ARWEYSTRPIYGWGNVGSKQKSTAGWLAALPIFEPHWQICMAGGLSTG 294

[Close]

BLAST of CmoCh12G002110 vs. TrEMBL
Match: A0A061GRJ2_THECC (Tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) isoform 2 OS=Theobroma cacao GN=TCM_037170 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 3.3e-108
Identity = 192/288 (66.67%), Postives = 223/288 (77.43%), Query Frame = 1


Query: 13  IHHFYSNSMEVQAGKSMFAVKVPQSLKSSSFRHRWGGSSKLKLKSRSRIRVLASSSNSVY 72
           +HHF S  +  +   S   VK  QS   + F  R  G   L++  RS  R++A SS +  
Sbjct: 11  LHHFSSCCIGFRPLNSKPTVKFSQSSTFNGFSPR--GLRPLRVGFRSNSRIIACSSVAEP 70

Query: 73  ESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQK 132
           E+  S+     +   +   P Y PTPANR  RTPHSGYHFDG+TR+FFEGWYFKV+IP++
Sbjct: 71  ETGTSSPAA--ESSAVSVNPVYVPTPANRNARTPHSGYHFDGTTRQFFEGWYFKVAIPEQ 130

Query: 133 RQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGSR 192
           RQSFCFMYSVENPAF +KLT  E++QHGPRFTGVGAQILGAYDKYICQY+EESQNFWGSR
Sbjct: 131 RQSFCFMYSVENPAFRRKLTPLEMLQHGPRFTGVGAQILGAYDKYICQYTEESQNFWGSR 190

Query: 193 HELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKT 252
           HEL LGN F +    +PP+KEV P+EFN+KV+EGFQV+PLWHQGFIRDDGRT Y   VKT
Sbjct: 191 HELILGNTFLANKDSRPPSKEVPPQEFNRKVLEGFQVSPLWHQGFIRDDGRTTYANIVKT 250

Query: 253 ARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           ARWEYSTRP+YGWGNVGSKQKSTAGWLAA P+FEPHWQICMAGGLSTG
Sbjct: 251 ARWEYSTRPIYGWGNVGSKQKSTAGWLAALPIFEPHWQICMAGGLSTG 294

[Close]

BLAST of CmoCh12G002110 vs. TrEMBL
Match: D7SUC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03600 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.3e-107
Identity = 191/268 (71.27%), Postives = 217/268 (80.97%), Query Frame = 1


Query: 41  SSFRHRWGGSS--------KLKLKSRSRIRVLASSSNSVYESSASAKIENDDDGGLVCPP 100
           S FR  W   S        KL+L+  S+I  L S+S S    S++A+    +  G V P 
Sbjct: 21  SHFRVSWNPRSIGSPCRPLKLRLRRSSQIFALNSTSTSEGNRSSAAESGETESLGSVSPI 80

Query: 101 GYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLT 160
            Y PTP+NRELRTPHSGYHFDGS R+FFEGWYFKVSIP+++QSFCFMYSVENPAF KKL 
Sbjct: 81  -YVPTPSNRELRTPHSGYHFDGSPRQFFEGWYFKVSIPEQKQSFCFMYSVENPAFQKKLG 140

Query: 161 TPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGSRHELSLGNCFASKGGFKPPNK 220
           T E +Q+GPRFTGVGAQILGA DKYICQ+SEES NFWG RHEL LG+ F  +   +PPNK
Sbjct: 141 TFEELQYGPRFTGVGAQILGADDKYICQFSEESTNFWGCRHELMLGHTFVGRKDLRPPNK 200

Query: 221 EVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQ 280
           EV PEEFN++V+EGFQVTPLWHQGFIRDDGR+NY++TVKTARWEYSTRP+YGWGNVGSKQ
Sbjct: 201 EVPPEEFNRRVIEGFQVTPLWHQGFIRDDGRSNYVDTVKTARWEYSTRPIYGWGNVGSKQ 260

Query: 281 KSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           KSTAGWLAAFPVFEPHWQICMAGGLSTG
Sbjct: 261 KSTAGWLAAFPVFEPHWQICMAGGLSTG 287

[Close]

BLAST of CmoCh12G002110 vs. TAIR10
Match: AT4G32770.1 (AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1))

HSP 1 Score: 367.5 bits (942), Expect = 1.6e-101
Identity = 166/231 (71.86%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 70  SVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSI 129
           S+   SAS    N +   +   P Y PT  NRELRTPHSGYHFDG+ RKFFEGWYF+VSI
Sbjct: 42  SISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSI 101

Query: 130 PQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFW 189
           P+KR+SFCFMYSVENPAF + L+  E+  +GPRFTGVGAQILGA DKY+CQY ++S NFW
Sbjct: 102 PEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFW 161

Query: 190 GSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLET 249
           G RHEL LGN F++  G K PNKEV PEEFN++V EGFQ TP WHQG I DDGRT+Y ET
Sbjct: 162 GDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAET 221

Query: 250 VKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           VK+ARWEYSTRPVYGWG+VG+KQKSTAGW AAFPVFEPHWQICMAGGLSTG
Sbjct: 222 VKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTG 272

[Close]

BLAST of CmoCh12G002110 vs. NCBI nr
Match: gi|659088516|ref|XP_008445023.1| (PREDICTED: tocopherol cyclase, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 572.8 bits (1475), Expect = 7.0e-160
Identity = 273/302 (90.40%), Postives = 283/302 (93.71%), Query Frame = 1


Query: 1   MDATACNLPLCGIHHFYSNSMEVQAGKSMFAVKVPQSLKSSS-FRHRWGGSSKLKLKSRS 60
           M+ATACNLPLCGIHH  S  +E QAG+ MF V++P SLKSSS FR RWGGSSKL+LKSRS
Sbjct: 1   MEATACNLPLCGIHHCSSRLVEAQAGRPMFGVELPLSLKSSSSFRLRWGGSSKLELKSRS 60

Query: 61  R-IRVLASSSNSVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRK 120
             IRVLASSSNSVYESSAS KIE DDDGGLVCPPGY+PTPANRELRTPHSGYHFDGSTRK
Sbjct: 61  TSIRVLASSSNSVYESSASLKIEKDDDGGLVCPPGYRPTPANRELRTPHSGYHFDGSTRK 120

Query: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYI 180
           FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLT  +I QHGPRFTGVGAQILGAYDKYI
Sbjct: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTAVDIAQHGPRFTGVGAQILGAYDKYI 180

Query: 181 CQYSEESQNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFI 240
           CQYSEESQNFWGSRHELSLGN FA+KGGFKPPNKEV PEEFNKKVVEGFQVTPLWHQGFI
Sbjct: 181 CQYSEESQNFWGSRHELSLGNSFATKGGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQGFI 240

Query: 241 RDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300
           RDDGRTNYLETVKTARWEYS+RPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS
Sbjct: 241 RDDGRTNYLETVKTARWEYSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300

[Close]

BLAST of CmoCh12G002110 vs. NCBI nr
Match: gi|659088514|ref|XP_008445022.1| (PREDICTED: tocopherol cyclase, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 572.8 bits (1475), Expect = 7.0e-160
Identity = 273/302 (90.40%), Postives = 283/302 (93.71%), Query Frame = 1


Query: 1   MDATACNLPLCGIHHFYSNSMEVQAGKSMFAVKVPQSLKSSS-FRHRWGGSSKLKLKSRS 60
           M+ATACNLPLCGIHH  S  +E QAG+ MF V++P SLKSSS FR RWGGSSKL+LKSRS
Sbjct: 1   MEATACNLPLCGIHHCSSRLVEAQAGRPMFGVELPLSLKSSSSFRLRWGGSSKLELKSRS 60

Query: 61  R-IRVLASSSNSVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRK 120
             IRVLASSSNSVYESSAS KIE DDDGGLVCPPGY+PTPANRELRTPHSGYHFDGSTRK
Sbjct: 61  TSIRVLASSSNSVYESSASLKIEKDDDGGLVCPPGYRPTPANRELRTPHSGYHFDGSTRK 120

Query: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYI 180
           FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLT  +I QHGPRFTGVGAQILGAYDKYI
Sbjct: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTAVDIAQHGPRFTGVGAQILGAYDKYI 180

Query: 181 CQYSEESQNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFI 240
           CQYSEESQNFWGSRHELSLGN FA+KGGFKPPNKEV PEEFNKKVVEGFQVTPLWHQGFI
Sbjct: 181 CQYSEESQNFWGSRHELSLGNSFATKGGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQGFI 240

Query: 241 RDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300
           RDDGRTNYLETVKTARWEYS+RPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS
Sbjct: 241 RDDGRTNYLETVKTARWEYSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300

[Close]

BLAST of CmoCh12G002110 vs. NCBI nr
Match: gi|778672072|ref|XP_011649737.1| (PREDICTED: tocopherol cyclase, chloroplastic [Cucumis sativus])

HSP 1 Score: 561.2 bits (1445), Expect = 2.1e-156
Identity = 269/302 (89.07%), Postives = 281/302 (93.05%), Query Frame = 1


Query: 1   MDATACNLPLCGIHHFYSNSMEVQAGKSMFAVKVPQSLKSSS-FRHRWGGSSKLKLKSRS 60
           M+ATA NLPLCGIHH     +E Q+GK MF +++PQSLKSSS FR R GGSSKL+LKSRS
Sbjct: 1   MEATAWNLPLCGIHHCSFKLVEAQSGKPMFGLELPQSLKSSSSFRLRSGGSSKLELKSRS 60

Query: 61  R-IRVLASSSNSVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRK 120
             IRVLASSSNSVYES AS+KIE DDDGGLVCPPGY+PTPANRELRTPHSGYHFDGSTRK
Sbjct: 61  TSIRVLASSSNSVYESPASSKIEKDDDGGLVCPPGYRPTPANRELRTPHSGYHFDGSTRK 120

Query: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYI 180
           FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLT  +I QHGPRFTGVGAQILGAYDKYI
Sbjct: 121 FFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTAVDIAQHGPRFTGVGAQILGAYDKYI 180

Query: 181 CQYSEESQNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFI 240
           CQYSEESQNFWGSRHELSLGN FA+KGGFKPPNKEV PEEFNKKVVEGFQVTPLWHQGFI
Sbjct: 181 CQYSEESQNFWGSRHELSLGNSFATKGGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQGFI 240

Query: 241 RDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300
           RDDGRTNYLETVKTARWEYS+RPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS
Sbjct: 241 RDDGRTNYLETVKTARWEYSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLS 300

[Close]

BLAST of CmoCh12G002110 vs. NCBI nr
Match: gi|576317990|gb|AHH29648.1| (tocopherol cyclase, partial [Juglans regia])

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 182/229 (79.48%), Postives = 199/229 (86.90%), Query Frame = 1


Query: 72  YESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQ 131
           YESS++ + +   +      P Y PTP NRELRTPHSGYHFDGS RKFFEGWYFKVSIP+
Sbjct: 7   YESSSTVQGDIQKESSGSVSPAYVPTPPNRELRTPHSGYHFDGSARKFFEGWYFKVSIPE 66

Query: 132 KRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGS 191
           +RQSFCFMYSVENPAFPKKLT  E+ Q GPRFTGVGAQILGA DKYICQYSEESQ FWGS
Sbjct: 67  RRQSFCFMYSVENPAFPKKLTALEVAQRGPRFTGVGAQILGANDKYICQYSEESQYFWGS 126

Query: 192 RHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVK 251
           RHEL LGN F  +   KPP KEV P+EFNK+V+EGFQV+PLWHQGFIRDDGR+NY++TVK
Sbjct: 127 RHELILGNTFVGEKESKPPYKEVPPQEFNKRVLEGFQVSPLWHQGFIRDDGRSNYVDTVK 186

Query: 252 TARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 301
           TARWEYSTRP+YGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG
Sbjct: 187 TARWEYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTG 235

[Close]

BLAST of CmoCh12G002110 vs. NCBI nr
Match: gi|1009177866|ref|XP_015870209.1| (PREDICTED: tocopherol cyclase, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 401.0 bits (1029), Expect = 3.7e-108
Identity = 202/296 (68.24%), Postives = 226/296 (76.35%), Query Frame = 1


Query: 10  LCGIHHFYSN-SMEVQAGKSMFAVKVPQSLKSSSFRHRWGGSSKLKLKSRSRIRVLASSS 69
           L  +HHF  N    +    S   +  P   K SS   R G   +LKL   + +R  AS S
Sbjct: 8   LAELHHFSPNLGFPISNPNSSCTLSCPS--KPSSIATRKG---RLKLGFPTNLR--ASVS 67

Query: 70  NSVYESS---ASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYF 129
           NS+ E+     S+ I  D +      P Y PTP NRELRTPHSGYHFDGS RKFFEGWYF
Sbjct: 68  NSLSETQQYGTSSTIGGDKESVGSVNPVYIPTPPNRELRTPHSGYHFDGSVRKFFEGWYF 127

Query: 130 KVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEES 189
           KVSIP++RQSFCFMYSVENPAF  KLT  E+ QHGPRFTGVGAQILGA DKYICQY+EES
Sbjct: 128 KVSIPERRQSFCFMYSVENPAFRNKLTPLEVAQHGPRFTGVGAQILGADDKYICQYTEES 187

Query: 190 QNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTN 249
           QNFWGSRHEL LGN F  +   KPPNKEV P+EFN++V EGFQVTPLWHQGFIRDDGR++
Sbjct: 188 QNFWGSRHELILGNTFIPQKQSKPPNKEVPPQEFNRRVSEGFQVTPLWHQGFIRDDGRSD 247

Query: 250 YLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGM 302
           Y+ETVKTARWEYSTRPVYGWG+VGS+QKSTAGWLAAFPVFEPHWQICMAGGLSTG+
Sbjct: 248 YVETVKTARWEYSTRPVYGWGDVGSQQKSTAGWLAAFPVFEPHWQICMAGGLSTGI 296

The following BLAST results are available for this feature:

BLAST of CmoCh12G002110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOCC_ARATH	2.8e-100	71.86	Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=2 SV=1	[more]
TOCC_ORYSJ	1.0e-94	73.58	Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VT...	[more]
TOCC_MAIZE	2.8e-92	67.39	Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1	[more]

BLAST of CmoCh12G002110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK5_CUCSA	1.5e-156	89.07	Tocopherol cyclase OS=Cucumis sativus GN=Csa_2G374670 PE=4 SV=1	[more]
X2D409_9ROSI	1.1e-108	79.48	Tocopherol cyclase (Fragment) OS=Juglans regia PE=2 SV=1	[more]
A0A061GK03_THECC	3.3e-108	66.67	Tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export ...	[more]
A0A061GRJ2_THECC	3.3e-108	66.67	Tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export ...	[more]
D7SUC0_VITVI	1.3e-107	71.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03600 PE=4 SV=...	[more]

BLAST of CmoCh12G002110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32770.1	1.6e-101	71.86	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / suc...	[more]

BLAST of CmoCh12G002110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088516\|ref\|XP_008445023.1\|	7.0e-160	90.40	PREDICTED: tocopherol cyclase, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659088514\|ref\|XP_008445022.1\|	7.0e-160	90.40	PREDICTED: tocopherol cyclase, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|778672072\|ref\|XP_011649737.1\|	2.1e-156	89.07	PREDICTED: tocopherol cyclase, chloroplastic [Cucumis sativus]	[more]
gi\|576317990\|gb\|AHH29648.1\|	1.6e-108	79.48	tocopherol cyclase, partial [Juglans regia]	[more]
gi\|1009177866\|ref\|XP_015870209.1\|	3.7e-108	68.24	PREDICTED: tocopherol cyclase, chloroplastic-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025893	Tocopherol_cyclase

Vocabulary: **Molecular Function**
Term	Definition
GO:0009976	tocopherol cyclase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0016122	xanthophyll metabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010189	vitamin E biosynthetic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0009915	phloem sucrose loading
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0009976	tocopherol cyclase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G002110.1	CmoCh12G002110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025893	Tocopherol cyclase	PFAM	PF14249	Tocopherol_cycl	coord: 117..303 score: 5.0E-64coord: 372..550 score: 7.8
None	No IPR available	unknown	Coil	Coil	coord: 473..493 scor
None	No IPR available	PANTHER	PTHR35309	FAMILY NOT NAMED	coord: 50..299 score: 0.0coord: 372..592 score:
None	No IPR available	PANTHER	PTHR35309:SF2	TOCOPHEROL CYCLASE, CHLOROPLASTIC	coord: 50..299 score: 0.0coord: 372..592 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G002110	Cucsa.161370	Cucumber (Gy14) v1	cgycmoB0448
CmoCh12G002110	CmaCh12G002570	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G002110	Cla022218	Watermelon (97103) v1	cmowmB134
CmoCh12G002110	Csa2G374670	Cucumber (Chinese Long) v2	cmocuB149
CmoCh12G002110	MELO3C011150	Melon (DHL92) v3.5.1	cmomeB151
CmoCh12G002110	ClCG08G012300	Watermelon (Charleston Gray)	cmowcgB161
CmoCh12G002110	CSPI02G22340	Wild cucumber (PI 183967)	cmocpiB150
CmoCh12G002110	Lsi08G010910	Bottle gourd (USVL1VR-Ls)	cmolsiB175
CmoCh12G002110	Cp4.1LG07g02280	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G002110	MELO3C011150.2	Melon (DHL92) v3.6.1	cmomedB167
CmoCh12G002110	CsaV3_2G030970	Cucumber (Chinese Long) v3	cmocucB0176
CmoCh12G002110	Cla97C08G155480	Watermelon (97103) v2	cmowmbB178
CmoCh12G002110	Bhi04G000691	Wax gourd	cmowgoB0205
CmoCh12G002110	CsGy2G022100	Cucumber (Gy14) v2	cgybcmoB160
CmoCh12G002110	Carg03848	Silver-seed gourd	carcmoB1310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G002110	Cucumber (Chinese Long) v3	cmocucB0195
CmoCh12G002110	Watermelon (97103) v2	cmowmbB151
CmoCh12G002110	Wax gourd	cmowgoB0218
CmoCh12G002110	Cucurbita moschata (Rifu)	cmocmoB151
CmoCh12G002110	Cucumber (Gy14) v1	cgycmoB0854
CmoCh12G002110	Cucurbita maxima (Rimu)	cmacmoB767
CmoCh12G002110	Wild cucumber (PI 183967)	cmocpiB167
CmoCh12G002110	Cucumber (Chinese Long) v2	cmocuB164
CmoCh12G002110	Melon (DHL92) v3.5.1	cmomeB159
CmoCh12G002110	Watermelon (Charleston Gray)	cmowcgB129
CmoCh12G002110	Watermelon (97103) v1	cmowmB161
CmoCh12G002110	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G002110	Bottle gourd (USVL1VR-Ls)	cmolsiB159
CmoCh12G002110	Cucumber (Gy14) v2	cgybcmoB274
CmoCh12G002110	Melon (DHL92) v3.6.1	cmomedB175
CmoCh12G002110	Silver-seed gourd	carcmoB0078