CmoCh11G016480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G016480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (1.3.5.1)
LocationCmo_Chr11 : 11716737 .. 11719663 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCCACTCTTCCTTCTTCCTACTCCAGATAAGTTCTCTGTTTCTCTCTCTCTCTCCATTTCTCTCTCTTCGAGGCACAACAATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCGCAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTGAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGTCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATCCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTAATTTCCCCACTTTTGTTCTTCGTTTATTCTTTGATTCTCTGTTTGTTAGAAATGAATAGAAAACAGGGTCTGTTTAGAGGGATTAAGAAGCTACTTTTGAAGGATGTATGTGGGTGTTCATGCTTATTCCTGAACTTTTGGAAGATTCAGAATCGTATTTATTAAGTTTCATTTTGTTGGATTGAAAGTTGGCAGCAATAGTTTGGTAATTTAGGTACTCTACTTGAGGGCTTAAGTGCGTTTTGAGGAGCTAGAAAACGTGTAAATCAAAAGCATTAAAATGGTCTTTTATTGAAGACTTCAAAGGGAAAGAAAAGTTAACAACGAATGAAGAGAGCTTATCAAAAGAAGGGAAATTTTGTATATGGAAATGAGAGGAGGAAGAACAGTCGTGGGGGTATCAAAAGGAATTGAAGAAACTGGAGAACTTATTGAGGTGTGTTCAGATCCCATTTGTAGGCCTGGAGGTTGGGCACAGCATATGTCGAGGTGTGTGTAGGTCGGGGATCGTTCTTAGTACGGTCCTACAATTAGCATATTTGAACAGCCCTTCCGGTACTAAACAAATCAGTAGTTTCTTATTTCACACAACTCTTGCCTCATCAAGGATTAGTCTGGTTATGTCCTCTCAGTTCCTAGAAGGTGCTTTCGGTCTCCTACTTGGAAAATAAGCCCTTGCGTGGTAGGACATTTATGATTTGATCGGATGTCTATTGGATAGAGAATCAAGTAATTTCATTTGGTTGTTTTATCTATGTTCGACAAAGACTTGGATGCCTTGGTAGACTTAATCTGAAACTCATTTGTTTGCTTTTAGTTTCTTTGTGGGTTTGAACGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTTTCCCTAGCATACGTGTTTTAAAACCTTGAGGGGAAGTCTGGAAGGGTAAACCCAAAGAAGACAATATTTATTGGCGTGGAGGATGAGCGAAAAGTTTTTGCTGATTTTGCATGAAAGAGTTTTTGATCCGCAACAATTACTCAAGAACATGATAGTAAGCCAAATTCTGAATATGATATGCTTTCTACAACAATCAAGGGCTCAGCCTTTTGTAGATGACAACTCACGAGACTTTTCTTCAACATTTTACTGACGTCCTACCGTTGAGGATTGTTGGGAGAGGAGTCCCACGTGACTAATTAAGGGGTTGATCATGAGTTTATAAGTAAGGAACACTATCTACATTATGAGGCCTTTTGGGGAAATCTAAAGTAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCACGAGAGCTTAATGGTGAAGTTTTAAGGTTGCCTAAAATATCTTTGTTCTCATATATAATTCATCCCTTCATAATTTTTGTTTGTTTTTCTCAAGATTTCACAAGTTCATGTGGTGTCTTATGTAATTGCATGATTTATTTGTTCCTTTCTTTCACCTCACAACTTCCTATCTATAACCATGGCATTGCAAAAAGATTGACACAGATGACTAATGGCTATGATTAAATTGATTACAAACTCAGTTTTACGTAAATTTTCTTCCTCTTTTTTAAATTTTTATCAAGGACACAATTTTTTAATTACAAAACTGTCCCCATTTCTCCCCTTTGTACATGCAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCGTGGGCTGAGCCGAAGTTTCGAGGTACACGAAACACAATAATGTTCTTTTTCATTCAGTTATGGAATATCTTGTGAGAACTCATGAGCAATGTGATTTTGATCGAATAACTTGTGGATCATTGACTTTCCACACATTCTGTACTTAAGATTTGATCTTTAGTATTTATCTGTCTCCAAATAAATGTTGACAGAAACCTCCTGGCTTCTCGAGTTGTCGTACCACGATCATCCTTTATTCTTTTTATTTGATAAAAAAAACTATGCTCCGATTTCCTGGTTCGTTCGATCACCTTCCTTTGTCTAAACTGCTATAGTTTAACCATCCATCTTGTAACGGCCCAGGCCCACCGCTAGCAGATATTATTCTCTTTTGGTTTTTCCTTTCAAC

mRNA sequence

AAAGCCACTCTTCCTTCTTCCTACTCCAGATAAGTTCTCTGTTTCTCTCTCTCTCTCCATTTCTCTCTCTTCGAGGCACAACAATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCGCAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTGAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGTCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATCCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCGTGGGCTGAGCCGAAGTTTCGAGGTACACGAAACACAATAATGTTCTTTTTCATTCAGTTATGGAATATCTTGTGAGAACTCATGAGCAATGTGATTTTGATCGAATAACTTGTGGATCATTGACTTTCCACACATTCTGTACTTAAGATTTGATCTTTAGTATTTATCTGTCTCCAAATAAATGTTGACAGAAACCTCCTGGCTTCTCGAGTTGTCGTACCACGATCATCCTTTATTCTTTTTATTTGATAAAAAAAACTATGCTCCGATTTCCTGGTTCGTTCGATCACCTTCCTTTGTCTAAACTGCTATAGTTTAACCATCCATCTTGTAACGGCCCAGGCCCACCGCTAGCAGATATTATTCTCTTTTGGTTTTTCCTTTCAAC

Coding sequence (CDS)

ATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCGCAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTGAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGTCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATCCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCGTGGGCTGA
Homology
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BLAST of CmoCh11G016480 vs. Swiss-Prot
Match: SDHB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 453.4 bits (1165), Expect = 1.8e-126
Identity = 217/280 (77.50%), Postives = 242/280 (86.43%), Query Frame = 1 

Query: 1   MATGILRRAISRVSA--TPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 60
           MA G++ R +   S+  +  +R +  R  ++ + AQ         ++LKTF IYRWNPD+
Sbjct: 1   MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query: 61  PSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLA 120
           P KPEL++YKIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGLA
Sbjct: 61  PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query: 121 CLTKIPS-DPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQS 180
           CLTKI S    +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVPGKEILQS
Sbjct: 121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query: 181 KQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEA 240
           K+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEA
Sbjct: 181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query: 241 INDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           I+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ  G
Sbjct: 241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQKSG 280

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BLAST of CmoCh11G016480 vs. Swiss-Prot
Match: SDHB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 448.0 bits (1151), Expect = 7.7e-125
Identity = 215/278 (77.34%), Postives = 237/278 (85.25%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQ---KVEQKAAVSSTLKTFAIYRWNPD 60
           MA+G++ R +    +   +    I A  +  GA+   K        S LKTF IYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 61  SPSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 120
           +P KPEL+ Y+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 121 ACLTKIPSDPS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           ACLTKI  + S +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVP KEILQ
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           AI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

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BLAST of CmoCh11G016480 vs. Swiss-Prot
Match: SDHB1_ORYSJ (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH2-1 PE=1 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.9e-115
Identity = 202/279 (72.40%), Postives = 226/279 (81.00%), Query Frame = 1 

Query: 2   ATGILRRAISRVSATPP---SRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 61
           A  +LRR+ +  +   P   SR +  + H+S         KA  ++  KTF+IYRW+PDS
Sbjct: 3   AAALLRRSPAARALLSPALSSRLVASKPHSSSPAPPPPPSKAGANT--KTFSIYRWDPDS 62

Query: 62  PS-KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 121
           PS KP L++YK+DL +CGPMVLD L+KIKNE DP+LTFRRSCREGICGSCAMNIDG NGL
Sbjct: 63  PSTKPHLKDYKVDLSDCGPMVLDVLLKIKNEQDPSLTFRRSCREGICGSCAMNIDGDNGL 122

Query: 122 ACLTKIPSDPS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 181
           ACLTKI S  S STI+PLPHMFVIKDLVVDMTNFYNQYKS+EPWLKRK  P  PGKEI Q
Sbjct: 123 ACLTKISSASSASTISPLPHMFVIKDLVVDMTNFYNQYKSVEPWLKRKDAPPQPGKEIPQ 182

Query: 182 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 241
           +K DRAKLDGMYECILCACCSTSCPSYWWNPE YLGPAALLHANRWI DSRD+FTKERL+
Sbjct: 183 TKADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAALLHANRWIQDSRDQFTKERLD 242

Query: 242 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL 276
           +INDEFKLYRCHTI NC  ACPKGLNP K I  IK+LQL
Sbjct: 243 SINDEFKLYRCHTIKNCTHACPKGLNPAKHIDTIKKLQL 279

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BLAST of CmoCh11G016480 vs. Swiss-Prot
Match: SDHB_CHICK (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.4e-94
Identity = 167/268 (62.31%), Postives = 198/268 (73.88%), Query Frame = 1 

Query: 18  PSRFLRI---------RAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS-KPELEEY 77
           P+RFLR            H    GAQ     AA +S +K F+IYRW+PD P  KP ++ Y
Sbjct: 15  PARFLRAGLRPVRGLEAVHGICRGAQTA---AAATSRIKKFSIYRWDPDKPGDKPRMQTY 74

Query: 78  KIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSDP 137
           ++DL +CGPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G N LAC  KI  D 
Sbjct: 75  EVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDL 134

Query: 138 SST--ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQDRAKLD 197
           S T  I PLPHM+V+KDLV D++NFY QYKSIEP+LK+K E     ++ LQS +DR KLD
Sbjct: 135 SKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLD 194

Query: 198 GMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAINDEFKLY 257
           G+YECILCACCSTSCPSYWWN + YLGPA L+ A RW+ DSRD++T+ERL  + D F LY
Sbjct: 195 GLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLY 254

Query: 258 RCHTILNCARACPKGLNPGKQIQNIKRL 274
           RCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 255 RCHTIMNCTRTCPKGLNPGKAIAEIKKM 279

[Close]
BLAST of CmoCh11G016480 vs. Swiss-Prot
Match: SDHB_RAT (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2)

HSP 1 Score: 345.1 bits (884), Expect = 7.0e-94
Identity = 160/243 (65.84%), Postives = 191/243 (78.60%), Query Frame = 1 

Query: 34  QKVEQKAAVSSTLKTFAIYRWNPDSPS-KPELEEYKIDLKECGPMVLDALIKIKNEIDPT 93
           ++ +  AA +  +KTFAIYRW+PD    KP ++ YK+DL +CGPMVLDALIKIKNEID T
Sbjct: 29  REAQTAAAAAPRIKTFAIYRWDPDKAGDKPRMQTYKVDLNKCGPMVLDALIKIKNEIDST 88

Query: 94  LTFRRSCREGICGSCAMNIDGCNGLACLTKIPSDPS--STITPLPHMFVIKDLVVDMTNF 153
           LTFRRSCREGICGSCAMNI+G N LAC  +I +D    S I PLPHM+VIKDLV D++NF
Sbjct: 89  LTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLGKVSKIYPLPHMYVIKDLVPDLSNF 148

Query: 154 YNQYKSIEPWLKRKSEPSVPGKEILQSKQDRAKLDGMYECILCACCSTSCPSYWWNPESY 213
           Y QYKSIEP+LK+K E     ++ LQS +DR KLDG+YECILCACCSTSCPSYWWN + Y
Sbjct: 149 YAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKY 208

Query: 214 LGPAALLHANRWISDSRDEFTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNI 273
           LGPA L+ A RW+ DSRDEFT+ERL  + D F LYRCHTI+NC + CPKGLNPGK I  I
Sbjct: 209 LGPAVLMQAYRWMIDSRDEFTEERLAKLQDPFSLYRCHTIMNCTQTCPKGLNPGKAIAEI 268

[Close]
BLAST of CmoCh11G016480 vs. TrEMBL
Match: A0A0A0LBZ3_CUCSA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucumis sativus GN=Csa_3G595230 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 1.3e-150
Identity = 259/277 (93.50%), Postives = 268/277 (96.75%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRA+SRVSA+ PSRFLRIRAHASEA AQ+V+QKAA SS LKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRALSRVSASSPSRFLRIRAHASEAQAQQVDQKAAASSHLKTFAIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKI S  SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKISSGDSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERL+AIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           EFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQLVG 277

[Close]
BLAST of CmoCh11G016480 vs. TrEMBL
Match: E5GCD7_CUCME (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 2.2e-150
Identity = 257/277 (92.78%), Postives = 267/277 (96.39%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRR +SRVSA+ PSRF+RIRAHASEA AQ+VEQKA  SS LKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRVLSRVSASSPSRFVRIRAHASEAEAQQVEQKATASSNLKTFAIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS  SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKIPSGDSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQL+G
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKSLQLLG 277

[Close]
BLAST of CmoCh11G016480 vs. TrEMBL
Match: A0A067LPB8_JATCU (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Jatropha curcas GN=JCGZ_10199 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 3.4e-140
Identity = 241/281 (85.77%), Postives = 260/281 (92.53%), Query Frame = 1 

Query: 1   MATGILRRAIS--RVSATPP--SRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNP 60
           MATG++RR +S  RVS++ P  +RF+  R HASEA AQKVE KA  S+ LKTF IYRWNP
Sbjct: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQKVEPKATSSTNLKTFQIYRWNP 60

Query: 61  DSPSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120
           D+P+KP+L++Y+IDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG
Sbjct: 61  DNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120

Query: 121 LACLTKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           LACLTKIPS  SSTITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRK+ P VPGKEILQ
Sbjct: 121 LACLTKIPSGNSSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+T ERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTNERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           AINDEFKLYRCHTILNCARACPKGLNPGKQI NIKRL+LVG
Sbjct: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 281

[Close]
BLAST of CmoCh11G016480 vs. TrEMBL
Match: W9S8I7_9ROSA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Morus notabilis GN=L484_017682 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 3.2e-138
Identity = 236/274 (86.13%), Postives = 254/274 (92.70%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVS+T  S+F+ +R  ASEA AQ+VE KA  S+ LKTF+IYRWNPD   
Sbjct: 1   MATGILRRAISRVSSTQASKFVPLRFLASEAEAQQVEPKAQGSTNLKTFSIYRWNPDKSG 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+ Y+IDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQNYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS  S+ ITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRKS PSVPGKE+LQSK+D
Sbjct: 121 TKIPSGSSTMITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKSPPSVPGKEVLQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDE+T+ERLE+IND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTEERLESIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           EFKLYRCHTILNCA ACPKGLNPG+QIQNIK+LQ
Sbjct: 241 EFKLYRCHTILNCASACPKGLNPGRQIQNIKKLQ 274

[Close]
BLAST of CmoCh11G016480 vs. TrEMBL
Match: A0A068V550_COFCA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Coffea canephora GN=GSCOC_T00015836001 PE=3 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 6.7e-136
Identity = 234/280 (83.57%), Postives = 255/280 (91.07%), Query Frame = 1 

Query: 1   MATGILRRAISRV-SATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSP 60
           MATG++RRAI+RV S+ P ++ +  RAHASEA AQ+ E +A  + +LKTF IYRWNPD+P
Sbjct: 1   MATGLVRRAIARVQSSAPAAKLVITRAHASEAEAQQAEPQAKKTHSLKTFQIYRWNPDNP 60

Query: 61  SKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLAC 120
            KPEL++Y IDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLAC
Sbjct: 61  QKPELKDYHIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLAC 120

Query: 121 LTKIPSDPSS--TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQS 180
           LTKI SD SS  TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKS P  PGKEI QS
Sbjct: 121 LTKIDSDGSSATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSSPPTPGKEIPQS 180

Query: 181 KQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEA 240
           K DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDE+TKERL+A
Sbjct: 181 KNDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDA 240

Query: 241 INDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           +NDEFKLYRCHTILNCARACPKGLNPGKQIQNIK+L+L+G
Sbjct: 241 VNDEFKLYRCHTILNCARACPKGLNPGKQIQNIKKLELLG 280

[Close]
BLAST of CmoCh11G016480 vs. TAIR10
Match: AT5G40650.1 (AT5G40650.1 succinate dehydrogenase 2-2)

HSP 1 Score: 453.4 bits (1165), Expect = 1.0e-127
Identity = 217/280 (77.50%), Postives = 242/280 (86.43%), Query Frame = 1 

Query: 1   MATGILRRAISRVSA--TPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 60
           MA G++ R +   S+  +  +R +  R  ++ + AQ         ++LKTF IYRWNPD+
Sbjct: 1   MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query: 61  PSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLA 120
           P KPEL++YKIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGLA
Sbjct: 61  PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query: 121 CLTKIPS-DPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQS 180
           CLTKI S    +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVPGKEILQS
Sbjct: 121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query: 181 KQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEA 240
           K+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEA
Sbjct: 181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query: 241 INDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           I+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ  G
Sbjct: 241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQKSG 280

[Close]
BLAST of CmoCh11G016480 vs. TAIR10
Match: AT3G27380.1 (AT3G27380.1 succinate dehydrogenase 2-1)

HSP 1 Score: 448.0 bits (1151), Expect = 4.3e-126
Identity = 215/278 (77.34%), Postives = 237/278 (85.25%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQ---KVEQKAAVSSTLKTFAIYRWNPD 60
           MA+G++ R +    +   +    I A  +  GA+   K        S LKTF IYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 61  SPSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 120
           +P KPEL+ Y+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 121 ACLTKIPSDPS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           ACLTKI  + S +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVP KEILQ
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           AI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

[Close]
BLAST of CmoCh11G016480 vs. TAIR10
Match: AT5G65165.1 (AT5G65165.1 succinate dehydrogenase 2-3)

HSP 1 Score: 315.5 bits (807), Expect = 3.3e-86
Identity = 152/244 (62.30%), Postives = 180/244 (73.77%), Query Frame = 1 

Query: 37  EQKAAVSSTLKTFAIYRWNPDSP-SKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTF 96
           E++       K F IYRWNPD P SKP L+ + +DL  CGPMVLD L KIK E D +L++
Sbjct: 57  EKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSY 116

Query: 97  RRSCREGICGSCAMNIDGCNGLACLTKIPSDPS--STITPLPHMFVIKDLVVDMTNFYNQ 156
           RRSCREGICGSC+MNIDG N +ACL  I  + S  + ITPLPHM+VIKDLVVD+TNFY Q
Sbjct: 117 RRSCREGICGSCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQ 176

Query: 157 YKSIEPWLKRKSEPSVPGKEILQSKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGP 216
           YKS+EPWLK +  P   G+E  QS +DR KLDG+YECILCACC+TSCPSYWWNPE + GP
Sbjct: 177 YKSMEPWLKTRKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGP 236

Query: 217 AALLHANRWISDSRDEFTKERLEAIND-EFKLYRCHTILNCARACPKGLNPGKQIQNIKR 276
           AALL A RWISDSRDE+ +ERL+AI + E K+YRC  I NC   CPKGLNP   I  +K 
Sbjct: 237 AALLQAYRWISDSRDEYREERLQAITESETKVYRCRAIKNCTATCPKGLNPASAILKMKS 296

[Close]
BLAST of CmoCh11G016480 vs. NCBI nr
Match: gi|449455896|ref|XP_004145686.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 540.4 bits (1391), Expect = 1.8e-150
Identity = 259/277 (93.50%), Postives = 268/277 (96.75%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRA+SRVSA+ PSRFLRIRAHASEA AQ+V+QKAA SS LKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRALSRVSASSPSRFLRIRAHASEAQAQQVDQKAAASSHLKTFAIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKI S  SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKISSGDSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERL+AIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           EFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQLVG 277

[Close]
BLAST of CmoCh11G016480 vs. NCBI nr
Match: gi|659098224|ref|XP_008450036.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 539.7 bits (1389), Expect = 3.1e-150
Identity = 257/277 (92.78%), Postives = 267/277 (96.39%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRR +SRVSA+ PSRF+RIRAHASEA AQ+VEQKA  SS LKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRVLSRVSASSPSRFVRIRAHASEAEAQQVEQKATASSNLKTFAIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS  SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKIPSGDSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQL+G
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKSLQLLG 277

[Close]
BLAST of CmoCh11G016480 vs. NCBI nr
Match: gi|802539511|ref|XP_012071382.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 505.8 bits (1301), Expect = 4.9e-140
Identity = 241/281 (85.77%), Postives = 260/281 (92.53%), Query Frame = 1 

Query: 1   MATGILRRAIS--RVSATPP--SRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNP 60
           MATG++RR +S  RVS++ P  +RF+  R HASEA AQKVE KA  S+ LKTF IYRWNP
Sbjct: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQKVEPKATSSTNLKTFQIYRWNP 60

Query: 61  DSPSKPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120
           D+P+KP+L++Y+IDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG
Sbjct: 61  DNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120

Query: 121 LACLTKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           LACLTKIPS  SSTITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRK+ P VPGKEILQ
Sbjct: 121 LACLTKIPSGNSSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+T ERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTNERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLVG 278
           AINDEFKLYRCHTILNCARACPKGLNPGKQI NIKRL+LVG
Sbjct: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 281

[Close]
BLAST of CmoCh11G016480 vs. NCBI nr
Match: gi|1021501923|ref|XP_016194164.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 505.8 bits (1301), Expect = 4.9e-140
Identity = 238/274 (86.86%), Postives = 257/274 (93.80%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATG+LRR++SRV ++P S+   IRAHASE  AQ+V+ KA  +ST+KTF IYRWNPDSPS
Sbjct: 1   MATGLLRRSLSRVPSSPASKLALIRAHASEPEAQQVDAKARGTSTMKTFQIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+ Y+I+LKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKNYEINLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS   STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+ P+VPGKEILQSK+D
Sbjct: 121 TKIPSSNVSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPTVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           R+KLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RSKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQ
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKSLQ 274

[Close]
BLAST of CmoCh11G016480 vs. NCBI nr
Match: gi|1012194180|ref|XP_015971399.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 505.4 bits (1300), Expect = 6.5e-140
Identity = 237/274 (86.50%), Postives = 258/274 (94.16%), Query Frame = 1 

Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATG+LRR++SRV ++P S+   IRAHASE  +Q+V+ KA  +ST+KTF IYRWNPDSPS
Sbjct: 1   MATGLLRRSLSRVPSSPASKLALIRAHASEPESQQVDAKARGTSTMKTFQIYRWNPDSPS 60

Query: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+ Y+I+LKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKNYEINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS  +STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+ PSVPGKEILQSK+D
Sbjct: 121 TKIPSSNASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPSVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           R+KLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RSKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQ
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKSLQ 274

The following BLAST results are available for this feature:
BLAST of CmoCh11G016480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDHB2_ARATH1.8e-12677.50Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ara... [more]
SDHB1_ARATH7.7e-12577.34Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ara... [more]
SDHB1_ORYSJ1.9e-11572.40Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ory... [more]
SDHB_CHICK5.4e-9462.31Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallu... [more]
SDHB_RAT7.0e-9465.84Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattu... [more]
BLAST of CmoCh11G016480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBZ3_CUCSA1.3e-15093.50Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucum... [more]
E5GCD7_CUCME2.2e-15092.78Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucum... [more]
A0A067LPB8_JATCU3.4e-14085.77Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Jatro... [more]
W9S8I7_9ROSA3.2e-13886.13Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Morus... [more]
A0A068V550_COFCA6.7e-13683.57Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Coffe... [more]
BLAST of CmoCh11G016480 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40650.11.0e-12777.50 succinate dehydrogenase 2-2[more]
AT3G27380.14.3e-12677.34 succinate dehydrogenase 2-1[more]
AT5G65165.13.3e-8662.30 succinate dehydrogenase 2-3[more]
BLAST of CmoCh11G016480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455896|ref|XP_004145686.1|1.8e-15093.50PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|659098224|ref|XP_008450036.1|3.1e-15092.78PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|802539511|ref|XP_012071382.1|4.9e-14085.77PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|1021501923|ref|XP_016194164.1|4.9e-14086.86PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|1012194180|ref|XP_015971399.1|6.5e-14086.50PREDICTED: succinate dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR004489Succ_DH/fum_Rdtase_Fe-S
IPR0060582Fe2S_fd_BS
IPR009051Helical_ferredxn
IPR012675Beta-grasp_dom_sf
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS
IPR025192Succ_DH/fum_Rdtase_N
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0051536iron-sulfur cluster binding
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0006099tricarboxylic acid cycle
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0022900 electron transport chain
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G016480.1CmoCh11G016480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPROFILEPS510852FE2S_FER_2coord: 60..137
score: 9
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainunknownSSF542922Fe-2S ferredoxin-likecoord: 45..146
score: 9.04
IPR004489Succinate dehydrogenase/fumarate reductase iron-sulphur proteinTIGRFAMsTIGR00384TIGR00384coord: 51..271
score: 2.0
IPR0060582Fe-2S ferredoxin, iron-sulphur binding sitePROSITEPS001972FE2S_FER_1coord: 99..107
scor
IPR009051Alpha-helical ferredoxinunknownSSF46548alpha-helical ferredoxincoord: 147..273
score: 1.92
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 42..146
score: 6.2
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROFILEPS513794FE4S_FER_2coord: 180..210
score: 7
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 190..201
scor
IPR025192Succinate dehydogenase/fumarate reductase N-terminalPFAMPF13085Fer2_3coord: 48..152
score: 8.4
NoneNo IPR availableGENE3DG3DSA:1.10.1060.10coord: 147..274
score: 7.0
NoneNo IPR availablePANTHERPTHR11921SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEINcoord: 2..273
score: 1.3E
NoneNo IPR availablePANTHERPTHR11921:SF29SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIALcoord: 2..273
score: 1.3E
NoneNo IPR availablePFAMPF13534Fer4_17coord: 189..262
score: 5.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G016480Cucsa.156220Cucumber (Gy14) v1cgycmoB0429
CmoCh11G016480CmaCh11G014700Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G016480CmaCh14G006870Cucurbita maxima (Rimu)cmacmoB243
CmoCh11G016480Csa3G595230Cucumber (Chinese Long) v2cmocuB110
CmoCh11G016480MELO3C014824Melon (DHL92) v3.5.1cmomeB129
CmoCh11G016480ClCG05G013010Watermelon (Charleston Gray)cmowcgB112
CmoCh11G016480CSPI03G26010Wild cucumber (PI 183967)cmocpiB112
CmoCh11G016480Lsi05G004740Bottle gourd (USVL1VR-Ls)cmolsiB117
CmoCh11G016480Cp4.1LG03g07090Cucurbita pepo (Zucchini)cmocpeB124
CmoCh11G016480Cp4.1LG04g05620Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G016480MELO3C014824.2Melon (DHL92) v3.6.1cmomedB137
CmoCh11G016480CsaV3_3G027530Cucumber (Chinese Long) v3cmocucB0126
CmoCh11G016480Cla97C05G094580Watermelon (97103) v2cmowmbB114
CmoCh11G016480Bhi01G001558Wax gourdcmowgoB0105
CmoCh11G016480CsGy3G024360Cucumber (Gy14) v2cgybcmoB264
CmoCh11G016480Carg09692Silver-seed gourdcarcmoB0589
CmoCh11G016480Carg15592Silver-seed gourdcarcmoB0502
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh11G016480CmoCh14G007030Cucurbita moschata (Rifu)cmocmoB092
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G016480Cucumber (Chinese Long) v3cmocucB0094
CmoCh11G016480Cucumber (Chinese Long) v3cmocucB0141
CmoCh11G016480Watermelon (97103) v2cmowmbB124
CmoCh11G016480Watermelon (97103) v2cmowmbB138
CmoCh11G016480Wax gourdcmowgoB0097
CmoCh11G016480Cucurbita moschata (Rifu)cmocmoB042
CmoCh11G016480Cucurbita moschata (Rifu)cmocmoB079
CmoCh11G016480Cucurbita moschata (Rifu)cmocmoB122
CmoCh11G016480Cucumber (Gy14) v1cgycmoB0539
CmoCh11G016480Cucurbita maxima (Rimu)cmacmoB072
CmoCh11G016480Cucurbita maxima (Rimu)cmacmoB116
CmoCh11G016480Cucurbita maxima (Rimu)cmacmoB677
CmoCh11G016480Wild cucumber (PI 183967)cmocpiB088
CmoCh11G016480Wild cucumber (PI 183967)cmocpiB123
CmoCh11G016480Cucumber (Chinese Long) v2cmocuB085
CmoCh11G016480Cucumber (Chinese Long) v2cmocuB121
CmoCh11G016480Melon (DHL92) v3.5.1cmomeB075
CmoCh11G016480Melon (DHL92) v3.5.1cmomeB113
CmoCh11G016480Watermelon (Charleston Gray)cmowcgB074
CmoCh11G016480Watermelon (Charleston Gray)cmowcgB120
CmoCh11G016480Watermelon (97103) v1cmowmB073
CmoCh11G016480Watermelon (97103) v1cmowmB129
CmoCh11G016480Cucurbita pepo (Zucchini)cmocpeB111
CmoCh11G016480Cucurbita pepo (Zucchini)cmocpeB131
CmoCh11G016480Bottle gourd (USVL1VR-Ls)cmolsiB099
CmoCh11G016480Bottle gourd (USVL1VR-Ls)cmolsiB133
CmoCh11G016480Cucumber (Gy14) v2cgybcmoB032
CmoCh11G016480Cucumber (Gy14) v2cgybcmoB558
CmoCh11G016480Melon (DHL92) v3.6.1cmomedB120
CmoCh11G016480Silver-seed gourdcarcmoB0495
CmoCh11G016480Silver-seed gourdcarcmoB0934
CmoCh11G016480Silver-seed gourdcarcmoB1404