CmoCh11G016470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G016470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRPM1-interacting protein 4 (RIN4) family protein
LocationCmo_Chr11 : 11713454 .. 11715936 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCAACGCCCAATTCTCTTCTTCCTTCTCTCTCGCTCTCTCAGTTTCGTTCTCTGTGCAGAAAGCTTTGTTAATGTATTTTAATGGCATCGGTAAGATTCTCTCTGACTCTTCTCTCTGACTCTTCTCTCTTTTTCAATCGATTTGTGTCTGTTCTGTTTGCATCTTTCTGTATTTTGTATCCTGTTTGATCTAATTCATTGAACGCATGCCTCTCTTATTCTTCTTCTCGAGAATTTGCAATTTTCATTGGGAATTGTTGTTGTAAATCGTAATTTCACGTGTAATGAACGGAAAACAATGTGGCTATGGTAAGAAATGGTGAATTTATAGATTGATGTTCTGTTTGCATCTTTATGTATTTTGAATCCTGTTTGTATGCCTCTCCTCTTCTTCTCGAGATTTTGCAATTTTCGTTGGAATTGTTGTTGTAAATCATAATTTCATCTATAACGAAGGGAAAACAATGTGGCTATGGTAAGAAATGGTAAATTTACATATCGATATTTTGTTTGCATCTTTATGTGTTTTGATCTAGTTCATTGAACATATGCCTCGCCTCTTCTTCTCGAGATTTTGCATTTTTCGTTGGAATTGTTGTTGTAAATCATAATTTCATCTGTAACGAAGGGAAAACAATGTGGCTATGGTAAGAAATGGTGAATTTACAAATTGATGTTCTGTTTGCATCTTTATGTATTTTGAATCCTGTTTGATCTAGTTTATTGAACATATGTCTCTCCTCTTCTTCTCGAGATTTTGCAATTTTCGTTGGAATTGTCGTTGTAAATCATAATTTCACCTGTAACGAAGGGAAAACAATGTGGCTATGGTAAGAAATGGTAAATTTACATATCGATATTTTGTTTGCATCTTTATGTGTTTTGATCTAGTTCATTGAACATATGCCTCTCTTCATCTTCTCGAGATTTACAATTTTCATTGGGAATTGTTGATATAAATCATAATCTTAGCTGTAACGAAGGGAAAACAATGTGGCTACGGTAAGAAATGGTAAACTTACGTAATGATGTTCTGTTTGCAACTTTTTTTTATTTGCAATCCTGTTTGATCCAATCCATTGACACATGCCTCTCCTCTTCTTCTCGAGATTTTGCAATTTTCATTGAGAATTGTTGTAATAAATCATAATTTTACCTGTACCAAAGGGAAAACAATGTGGCTACGGTAAGAAATGGTAAATTTACAAATCGATGTTCAGGCGTAGCTAACGACTTTTGGTTTTAGAAAGTAGCATTTGCTTGAATCGTTTAAGAATCGGCGTTAGGGATTTCAAATTGTTGGGATTGGTATTTACCTGTATTGAATGTAAGTTGTATCCTACCGTAGAAAACTATCGATTCGTGATGGAATTCATAAATCTTGTTATCAACGAAGAAGTTCTGAATTCTGATATATATGTTTCTAACGTCTATAGCAGGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCTTCAGCCGAAGGCTTCACAGTAATATTTAGCAAAGCTAGAAATGAGAAGAAGTCAAATGAGGCTTCTGGGAACATAGCAGCTAAAAACAATGCACCAGAACCGGAAGAGAATTATCAGTATTCTCCCATGGTAAGCAATATCATGAACTAATTTGTCAATTTAAGCATACCTCAACGAATTAAACCATCTCCATCTCTTTGAACTTAAGTAAATATCAAACCATCTCCATCTCTTTGAACTTAAGTAAATATCGTTAATCAGATCTTTCTTCTCATATTCTGGTTAGAATTTACTACAAATTCTTGTGTTTTGGATGCAGAAAGTATTCTCTCTTGGTAAGCAATATCACGAACTAAATTGTCAATCTGAGTATAATTCAACGAATTAAATCACCCCCACCTCTTTGATCTTAAGAAAATATCGTTAACTAGATCTTTCTTCTCATATTCTGGTTGGAATTTACTGCAAATTCTTGTGTTTTGGATGCAGAAAATTTTCTCCCATGGTAAGCAATATCACGAACTAAATTGTGAATCTGAGCATAACTCAACGAATTAAATCATCCCCACCTCTTTGAACTTGAAGAAAATATGGTTAACTAGTCGGAATTTACTGCAAATTCTCGTGTTTTTGGATGCAGAAAAAATGGTTTTGCTGTCTCTGAAACTGATAGGGAGCGATGGTGGTGGTGACAACAGACATGGTGAAAGAAGGGTAAAGATTTTCCTGATTTGTGAGGGAAATGCAGAATCAAGTAGGGATGTGATGGTTTACTTCCTTTCTCTCTGTTAAGTTTCGCTCTAATAGAAACTTCAGTTTGTTCATCTCATGTCATGGATGTTGTTGGTTGCAACTTCACCATTCACAAGATTTCTAAACTATTATGTATTTTTCATCTTCTAACTAAAGTAACTGCACATATTGTCTGTCAAAAACAAACTATAAGCATCATTATTGTAACGTTTATGACCTTCTTGAGAGCGGAAG

mRNA sequence

CTTCCAACGCCCAATTCTCTTCTTCCTTCTCTCTCGCTCTCTCAGTTTCGTTCTCTGTGCAGAAAGCTTTGTTAATGTATTTTAATGGCATCGCAGGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCTTCAGCCGAAGGCTTCACAGTAATATTTAGCAAAGCTAGAAATGAGAAGAAGTCAAATGAGGCTTCTGGGAACATAGCAGCTAAAAACAATGCACCAGAACCGGAAGAGAATTATCAGTATTCTCCCATGAAAAAATGGTTTTGCTGTCTCTGAAACTGATAGGGAGCGATGGTGGTGGTGACAACAGACATGGTGAAAGAAGGGTAAAGATTTTCCTGATTTGTGAGGGAAATGCAGAATCAAGTAGGGATGTGATGGTTTACTTCCTTTCTCTCTGTTAAGTTTCGCTCTAATAGAAACTTCAGTTTGTTCATCTCATGTCATGGATGTTGTTGGTTGCAACTTCACCATTCACAAGATTTCTAAACTATTATGTATTTTTCATCTTCTAACTAAAGTAACTGCACATATTGTCTGTCAAAAACAAACTATAAGCATCATTATTGTAACGTTTATGACCTTCTTGAGAGCGGAAG

Coding sequence (CDS)

ATGGCATCGCAGGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCTTCAGCCGAAGGCTTCACAGTAATATTTAGCAAAGCTAGAAATGAGAAGAAGTCAAATGAGGCTTCTGGGAACATAGCAGCTAAAAACAATGCACCAGAACCGGAAGAGAATTATCAGTATTCTCCCATGAAAAAATGGTTTTGCTGTCTCTGA
Homology
[Close]
BLAST of CmoCh11G016470 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-06
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 3   SQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQY 62
           S +K   +PKFG+WD NNP+SA+G+T IF+K R E+ S     N++  +  P  + +   
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSS---GANVSGSSRTPTHQSS--R 200

Query: 63  SPMKKWFCC 72
           +P     CC
Sbjct: 201 NPNNTSSCC 204

[Close]
BLAST of CmoCh11G016470 vs. TrEMBL
Match: A0A0A0LDP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G595220 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQY 62
          + DKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEA GN AAK+N    EENYQY
Sbjct: 2  ASDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQY 61

Query: 63 SPMKKWFCC 72
          SPMKKWFCC
Sbjct: 62 SPMKKWFCC 70

[Close]
BLAST of CmoCh11G016470 vs. TrEMBL
Match: B9SLS6_RICCO (NOI, putative OS=Ricinus communis GN=RCOM_0530960 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-22
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAA---KNNAPEPE 60
          M++QDKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSN A G  AA    NN  +P+
Sbjct: 1  MSTQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNAAGGAGAASQRNNNLHKPD 60

Query: 61 ENYQYSPMKKWFCC 72
          +NYQ    KKWFCC
Sbjct: 61 DNYQDPTAKKWFCC 74

[Close]
BLAST of CmoCh11G016470 vs. TrEMBL
Match: D7SHC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10000 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-21
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAA---KNNAPEPE 60
          MASQD+GRPLPKFGEWDVNNPASAEGFTVIF+KAR+EKK+N A+GN+A+     N  +  
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTN-AAGNVASPRRNGNGYKQN 60

Query: 61 ENYQYSPMKKWFCC 72
          E+Y YSP +KWFCC
Sbjct: 61 EDYHYSPKRKWFCC 73

[Close]
BLAST of CmoCh11G016470 vs. TrEMBL
Match: V4UDT4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017698mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-20
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIA----AKNNAPEPEEN 63
          Q KGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSN A+  +A     +N A  P+E 
Sbjct: 5  QGKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNVANAAVARPPSQRNVARVPDEQ 64

Query: 64 YQYSPMKKWFCC 72
          YQ++P KKWFCC
Sbjct: 65 YQHTPTKKWFCC 76

[Close]
BLAST of CmoCh11G016470 vs. TrEMBL
Match: F6GX64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00160 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-19
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSN-EASGNIAAKN-NAPEPEE 60
          MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKK+N  A+G   A+N +  + + 
Sbjct: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKTNGAAAGGGGAQNIDNHKQDP 60

Query: 61 NYQYSPMKKWFCC 72
          N+  +P+K+WFCC
Sbjct: 61 NFPDTPLKRWFCC 73

[Close]
BLAST of CmoCh11G016470 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-17
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQYSP 64
          DKGRPLPKFGEWDVN+P+SAEGFTVIF+KARNEKK    S +                 P
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKP 62

Query: 65 MKKWFCCL 73
           KKWFCC+
Sbjct: 63 AKKWFCCI 70

[Close]
BLAST of CmoCh11G016470 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 79.7 bits (195), Expect = 8.0e-16
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQY 62
          +++KG+PLPKFGEWDVNNPASAEGFTVIFSKA +EKK+ +ASG  A  N+   P+ N   
Sbjct: 2  AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASG--AGPNSLVSPQRNQNS 61

Query: 63 -----------SPMKKWFC 71
                         KWFC
Sbjct: 62 DQNNNHSSQNPKAKNKWFC 78

[Close]
BLAST of CmoCh11G016470 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-15
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQYS 63
          Q + RPLPKFGEWDVN+PASAEGFTVIF+KAR++KK+N ASG  A++          Q  
Sbjct: 9  QQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTN-ASGRAASQR---RDNNKSQDE 68

Query: 64 PMKKWFCC 72
          P KK FCC
Sbjct: 69 PTKKRFCC 72

[Close]
BLAST of CmoCh11G016470 vs. TAIR10
Match: AT4G35655.1 (AT4G35655.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 8.9e-15
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENY 60
          MAS    RPLPKFGEWDVN+PA+AEGFTVIFSKA  +KK+  +S      + AP   +  
Sbjct: 1  MASNSDARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTGRSS------SKAPSQRKQD 60

Query: 61 QYSPMKKWFC 71
             P KKW C
Sbjct: 61 GVKPTKKWLC 64

[Close]
BLAST of CmoCh11G016470 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGN 47
          +DKGRPLPKFGEWDVN+PASAEGFTVIF+KAR+EKK+    G+
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]
BLAST of CmoCh11G016470 vs. NCBI nr
Match: gi|659098226|ref|XP_008450037.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-29
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENY 60
          MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEA GN AAK+N    EENY
Sbjct: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENY 60

Query: 61 QYSPMKKWFCC 72
          QYSPMKKWFCC
Sbjct: 61 QYSPMKKWFCC 71

[Close]
BLAST of CmoCh11G016470 vs. NCBI nr
Match: gi|659098228|ref|XP_008450038.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQY 62
          + DKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEA GN AAK+N    EENYQY
Sbjct: 2  ASDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQY 61

Query: 63 SPMKKWFCC 72
          SPMKKWFCC
Sbjct: 62 SPMKKWFCC 70

[Close]
BLAST of CmoCh11G016470 vs. NCBI nr
Match: gi|255572008|ref|XP_002526945.1| (PREDICTED: RPM1-interacting protein 4 [Ricinus communis])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAA---KNNAPEPE 60
          M++QDKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSN A G  AA    NN  +P+
Sbjct: 1  MSTQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNAAGGAGAASQRNNNLHKPD 60

Query: 61 ENYQYSPMKKWFCC 72
          +NYQ    KKWFCC
Sbjct: 61 DNYQDPTAKKWFCC 74

[Close]
BLAST of CmoCh11G016470 vs. NCBI nr
Match: gi|985436533|ref|XP_015383126.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Citrus sinensis])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-21
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIA----AKNNAPEP 60
          MA+Q KGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSN A+  +A     +N A  P
Sbjct: 1  MATQGKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNVANAAVARPPSQRNVARVP 60

Query: 61 EENYQYSPMKKWFCC 72
          +E YQ++P KKWFCC
Sbjct: 61 DEQYQHTPTKKWFCC 75

[Close]
BLAST of CmoCh11G016470 vs. NCBI nr
Match: gi|225456785|ref|XP_002277247.1| (PREDICTED: RPM1-interacting protein 4 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-21
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAA---KNNAPEPE 60
          MASQD+GRPLPKFGEWDVNNPASAEGFTVIF+KAR+EKK+N A+GN+A+     N  +  
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTN-AAGNVASPRRNGNGYKQN 60

Query: 61 ENYQYSPMKKWFCC 72
          E+Y YSP +KWFCC
Sbjct: 61 EDYHYSPKRKWFCC 73

The following BLAST results are available for this feature:
BLAST of CmoCh11G016470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIN4_ARATH5.4e-0637.68RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1[more]
BLAST of CmoCh11G016470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDP9_CUCSA3.9e-2785.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G595220 PE=4 SV=1[more]
B9SLS6_RICCO8.4e-2272.97NOI, putative OS=Ricinus communis GN=RCOM_0530960 PE=4 SV=1[more]
D7SHC3_VITVI1.9e-2170.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10000 PE=4 SV=... [more]
V4UDT4_9ROSI2.7e-2070.83Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017698mg PE=4 SV=1[more]
F6GX64_VITVI5.1e-1968.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00160 PE=4 SV=... [more]
BLAST of CmoCh11G016470 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04410.12.5e-1758.82 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G63270.18.0e-1653.16 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G40645.11.8e-1560.29 RPM1-interacting protein 4 (RIN4) family protein[more]
AT4G35655.18.9e-1554.29 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G55850.21.3e-1376.74 RPM1-interacting protein 4 (RIN4) family protein[more]
BLAST of CmoCh11G016470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098226|ref|XP_008450037.1|4.6e-2988.73PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo][more]
gi|659098228|ref|XP_008450038.1|5.6e-2785.51PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo][more]
gi|255572008|ref|XP_002526945.1|1.2e-2172.97PREDICTED: RPM1-interacting protein 4 [Ricinus communis][more]
gi|985436533|ref|XP_015383126.1|2.1e-2170.67PREDICTED: RPM1-interacting protein 4 isoform X2 [Citrus sinensis][more]
gi|225456785|ref|XP_002277247.1|2.7e-2170.27PREDICTED: RPM1-interacting protein 4 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008233 peptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G016470.1CmoCh11G016470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 5..40
score: 1.3
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 1..71
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G016470Cucsa.156230Cucumber (Gy14) v1cgycmoB0429
CmoCh11G016470CmaCh11G014710Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G016470CmaCh14G006880Cucurbita maxima (Rimu)cmacmoB243
CmoCh11G016470Csa3G595220Cucumber (Chinese Long) v2cmocuB110
CmoCh11G016470ClCG05G013020Watermelon (Charleston Gray)cmowcgB112
CmoCh11G016470CSPI03G26000Wild cucumber (PI 183967)cmocpiB112
CmoCh11G016470Lsi05G004750Bottle gourd (USVL1VR-Ls)cmolsiB117
CmoCh11G016470Cp4.1LG03g07170Cucurbita pepo (Zucchini)cmocpeB124
CmoCh11G016470Cp4.1LG04g05600Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G016470CsaV3_3G027510Cucumber (Chinese Long) v3cmocucB0126
CmoCh11G016470Cla97C05G094590Watermelon (97103) v2cmowmbB114
CmoCh11G016470Bhi01G001559Wax gourdcmowgoB0105
CmoCh11G016470CsGy3G024350Cucumber (Gy14) v2cgybcmoB264
CmoCh11G016470Carg15591Silver-seed gourdcarcmoB0502
CmoCh11G016470Carg09691Silver-seed gourdcarcmoB0589
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G016470Cucurbita pepo (Zucchini)cmocpeB111
CmoCh11G016470Cucurbita pepo (Zucchini)cmocpeB131
CmoCh11G016470Bottle gourd (USVL1VR-Ls)cmolsiB099
CmoCh11G016470Bottle gourd (USVL1VR-Ls)cmolsiB133
CmoCh11G016470Cucumber (Gy14) v2cgybcmoB032
CmoCh11G016470Cucumber (Gy14) v2cgybcmoB558
CmoCh11G016470Melon (DHL92) v3.6.1cmomedB120
CmoCh11G016470Melon (DHL92) v3.6.1cmomedB137
CmoCh11G016470Silver-seed gourdcarcmoB0495
CmoCh11G016470Silver-seed gourdcarcmoB0934
CmoCh11G016470Silver-seed gourdcarcmoB1404
CmoCh11G016470Cucumber (Chinese Long) v3cmocucB0094
CmoCh11G016470Cucumber (Chinese Long) v3cmocucB0141
CmoCh11G016470Watermelon (97103) v2cmowmbB124
CmoCh11G016470Watermelon (97103) v2cmowmbB138
CmoCh11G016470Wax gourdcmowgoB0097
CmoCh11G016470Cucurbita moschata (Rifu)cmocmoB042
CmoCh11G016470Cucurbita moschata (Rifu)cmocmoB079
CmoCh11G016470Cucurbita moschata (Rifu)cmocmoB092
CmoCh11G016470Cucurbita moschata (Rifu)cmocmoB122
CmoCh11G016470Cucumber (Gy14) v1cgycmoB0539
CmoCh11G016470Cucurbita maxima (Rimu)cmacmoB072
CmoCh11G016470Cucurbita maxima (Rimu)cmacmoB116
CmoCh11G016470Cucurbita maxima (Rimu)cmacmoB677
CmoCh11G016470Wild cucumber (PI 183967)cmocpiB088
CmoCh11G016470Wild cucumber (PI 183967)cmocpiB123
CmoCh11G016470Cucumber (Chinese Long) v2cmocuB085
CmoCh11G016470Cucumber (Chinese Long) v2cmocuB121
CmoCh11G016470Melon (DHL92) v3.5.1cmomeB075
CmoCh11G016470Melon (DHL92) v3.5.1cmomeB113
CmoCh11G016470Melon (DHL92) v3.5.1cmomeB129
CmoCh11G016470Watermelon (Charleston Gray)cmowcgB074
CmoCh11G016470Watermelon (Charleston Gray)cmowcgB120
CmoCh11G016470Watermelon (97103) v1cmowmB073
CmoCh11G016470Watermelon (97103) v1cmowmB129