Carg09691 (gene) Silver-seed gourd

NameCarg09691
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRPM1-interacting protein 4
LocationCucurbita_argyrosperma_scaffold_023 : 359967 .. 360891 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGGTAAGATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTCCTTCTTTCATCTATTCCTCTTTTCTGTATGCATCTTTGCATCCCTGTTCGTTCATCGATCGAGTTTGATCGAACTGTTTGTATGGAGATTCTGCAACTTTTACCTGTAATGAATGAAAAATATGTAGCCATTGTATTGTAAGACATGGTAAATGTGTAAATCTATGTCATTTGCTCGTATCGATCGAGCGAGCAATGAGACGAGACAACCATTGAAACTTTCAGATATAAATCTATGATCTTACCTATGATGTTTTGTATCATTTTTTTGTGGTAAAACATTCAATATATAATCATGAATTACCTTCCCTTTGTTTCTCCCTGCCATGCTTGCTGCATTGTTTGATTCCCCCCAACAGCAGAAGGATTTCATTGCTTAAATAGAAATGCATGGCTAGAGAGATCTTGTAATAGTCTAAACCCACCGATAGTAGATATTGTCCAGTTTGGACTTTTCCTTTTGAAAACGCCTTTGTTAAGGAGAGGTTTCCACCATCCTCGTTCCAACTGAGGTGGGATCTCACAGATCTACACATAAAAATGGAACATTCTATGCAACAGAGAAGTGCATTTAAAGAACCGACAAACACGAGACTTCACAAGTATAGTTTGTCAATGAAGATCTGAATTCTGATATATGTATGTTTCTAATGATGTCTATAGCAGGATAGAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAACCCGGCCTCCGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGACGAGAAGAAGTCAAATGAGGCTCCGGGGAACACAGCAGCAAAAAACAATGCATCCAGACCAGAAGAGAATTATCAATATTCCCCCATGGTAAGTAATCTCATTTACTAA

mRNA sequence

ATGGCTTCGGATAGAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAACCCGGCCTCCGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGACGAGAAGAAGTCAAATGAGGCTCCGGGGAACACAGCAGCAAAAAACAATGCATCCAGACCAGAAGAGAATTATCAATATTCCCCCATGGTAAGTAATCTCATTTACTAA

Coding sequence (CDS)

ATGGCTTCGGATAGAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAACCCGGCCTCCGCCGAAGGCTTTACAGTAATATTTAGCAAAGCTAGAGACGAGAAGAAGTCAAATGAGGCTCCGGGGAACACAGCAGCAAAAAACAATGCATCCAGACCAGAAGAGAATTATCAATATTCCCCCATGGTAAGTAATCTCATTTACTAA

Protein sequence

MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQYSPMVSNLIY
BLAST of Carg09691 vs. NCBI nr
Match: KGN58221.1 (hypothetical protein Csa_3G595220 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.9e-26
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQ 60
          MASD+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAK+N SR EENYQ
Sbjct: 1  MASDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 60

Query: 61 YSPM 65
          YSPM
Sbjct: 61 YSPM 64

BLAST of Carg09691 vs. NCBI nr
Match: XP_021669049.1 (RPM1-interacting protein 4-like [Hevea brasiliensis])

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAA---KNNASRPEENYQ 61
          D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN   G  AA    NN  +PEENYQ
Sbjct: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNATGGAGAASQRNNNLHKPEENYQ 64

BLAST of Carg09691 vs. NCBI nr
Match: PQM40163.1 (hypothetical protein Pyn_24221 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQ 60
          MASD GRPLPKFGEWDVNNPASAEGFTVIF+KARD+K SN APG       +S+PE N Q
Sbjct: 1  MASDIGRPLPKFGEWDVNNPASAEGFTVIFTKARDQKMSNGAPGTGTP---SSKPEPNSQ 60

Query: 61 YSP 64
          Y P
Sbjct: 61 YPP 60

BLAST of Carg09691 vs. NCBI nr
Match: OAY47896.1 (hypothetical protein MANES_06G114300 [Manihot esculenta])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNN---ASRPEE 60
          MASD+GRPLPKFGEWDVNNPASAEGFTVIF+KARDEKK+  +P   + K N    +   +
Sbjct: 1  MASDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTKNSPKTMSPKRNDAVRNNNND 60

Query: 61 NYQYSPMVSNLI 70
          +YQ +P +S+L+
Sbjct: 61 SYQTAPKLSHLV 72

BLAST of Carg09691 vs. NCBI nr
Match: XP_002277247.1 (PREDICTED: RPM1-interacting protein 4 [Vitis vinifera] >CBI14882.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 2  ASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAA---KNNASRPEEN 61
          + DRGRPLPKFGEWDVNNPASAEGFTVIF+KARDEKK+N A GN A+     N  +  E+
Sbjct: 3  SQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTN-AAGNVASPRRNGNGYKQNED 62

Query: 62 YQYSP 64
          Y YSP
Sbjct: 63 YHYSP 66

BLAST of Carg09691 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-15
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEEN 59
          MA ++G+PLPKFGEWDVNNPASAEGFTVIFSKA DEKK+ +A G  A  N+   P+ N
Sbjct: 1  MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASG--AGPNSLVSPQRN 56

BLAST of Carg09691 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-15
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 0

Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 46
          D+GRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

BLAST of Carg09691 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 3  SDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKK---SNEAPG 45
          +D+GRPLPKFGEWDVN+P+SAEGFTVIF+KAR+EKK    +++PG
Sbjct: 2  ADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPG 46

BLAST of Carg09691 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 7  RPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAK---NNASRPE 57
          RPLPKFGEWDVN+PASAEGFTVIF+KARD+KK+N A G  A++   NN S+ E
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTN-ASGRAASQRRDNNKSQDE 64

BLAST of Carg09691 vs. TAIR10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKS 40
          +R RPLPKFGEWD  NP SAEGFTVIF+KARD+KK+
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

BLAST of Carg09691 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-14
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0

Query: 3  SDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGN 46
          SD+GRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+   PG+
Sbjct: 2  SDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

BLAST of Carg09691 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-05
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 9   LPKFGEWDVNNPASAEGFTVIFSKARDEKKS--NEAPGNTAAKNNASRPEEN 59
           +PKFG+WD NNP+SA+G+T IF+K R+E+ S  N +  +    + +SR   N
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNN 199

BLAST of Carg09691 vs. TrEMBL
Match: tr|A0A0A0LDP9|A0A0A0LDP9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G595220 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-26
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQ 60
          MASD+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAK+N SR EENYQ
Sbjct: 1  MASDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 60

Query: 61 YSPM 65
          YSPM
Sbjct: 61 YSPM 64

BLAST of Carg09691 vs. TrEMBL
Match: tr|A0A2C9VQ22|A0A2C9VQ22_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G114300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNN---ASRPEE 60
          MASD+GRPLPKFGEWDVNNPASAEGFTVIF+KARDEKK+  +P   + K N    +   +
Sbjct: 1  MASDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTKNSPKTMSPKRNDAVRNNNND 60

Query: 61 NYQYSPMVSNLI 70
          +YQ +P +S+L+
Sbjct: 61 SYQTAPKLSHLV 72

BLAST of Carg09691 vs. TrEMBL
Match: tr|M5WY28|M5WY28_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021458mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQ 60
          M  D GRPLPKFGEWDVNNPASAEGFTVIF+KARD+K SN APG       +S+PE N Q
Sbjct: 1  MGQDIGRPLPKFGEWDVNNPASAEGFTVIFTKARDQKMSNGAPGTGTP---SSKPEPNSQ 60

Query: 61 YSP 64
          Y P
Sbjct: 61 YPP 60

BLAST of Carg09691 vs. TrEMBL
Match: tr|D7SHC3|D7SHC3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g10000 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 2  ASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAA---KNNASRPEEN 61
          + DRGRPLPKFGEWDVNNPASAEGFTVIF+KARDEKK+N A GN A+     N  +  E+
Sbjct: 3  SQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTN-AAGNVASPRRNGNGYKQNED 62

Query: 62 YQYSP 64
          Y YSP
Sbjct: 63 YHYSP 66

BLAST of Carg09691 vs. TrEMBL
Match: tr|A0A2I4GL40|A0A2I4GL40_9ROSI (RPM1-interacting protein 4-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109008836 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNT 47
          MASD+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN+   NT
Sbjct: 1  MASDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNKGTYNT 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN58221.18.9e-2693.75hypothetical protein Csa_3G595220 [Cucumis sativus][more]
XP_021669049.16.4e-1678.33RPM1-interacting protein 4-like [Hevea brasiliensis][more]
PQM40163.11.9e-1573.02hypothetical protein Pyn_24221 [Prunus yedoensis var. nudiflora][more]
OAY47896.12.4e-1561.11hypothetical protein MANES_06G114300 [Manihot esculenta][more]
XP_002277247.11.6e-1469.23PREDICTED: RPM1-interacting protein 4 [Vitis vinifera] >CBI14882.3 unnamed prote... [more]
Match NameE-valueIdentityDescription
AT5G63270.11.3e-1567.24RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G55850.26.6e-1580.95RPM1-interacting protein 4 (RIN4) family protein[more]
AT2G04410.14.7e-1371.11RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G40645.14.7e-1369.81RPM1-interacting protein 4 (RIN4) family protein[more]
AT3G48450.11.5e-1177.78RPM1-interacting protein 4 (RIN4) family protein[more]
Match NameE-valueIdentityDescription
sp|O22633|NOI4_ARATH4.1e-1481.40Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1[more]
sp|Q8GYN5|RIN4_ARATH7.7e-0544.23RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LDP9|A0A0A0LDP9_CUCSA5.9e-2693.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G595220 PE=4 SV=1[more]
tr|A0A2C9VQ22|A0A2C9VQ22_MANES1.6e-1561.11Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G114300 PE=4 SV=... [more]
tr|M5WY28|M5WY28_PRUPE1.0e-1469.84Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021458mg PE=4 SV=1[more]
tr|D7SHC3|D7SHC3_VITVI1.0e-1469.23Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g10000 PE=4 SV=... [more]
tr|A0A2I4GL40|A0A2I4GL40_9ROSI1.4e-1489.13RPM1-interacting protein 4-like isoform X2 OS=Juglans regia OX=51240 GN=LOC10900... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09691-RACarg09691-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 4..39
e-value: 1.4E-22
score: 78.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..59
NoneNo IPR availablePANTHERPTHR33159:SF2RPM1-INTERACTING PROTEIN 4 RIN4 FAMILY PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 1..56

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09691Carg15591Silver-seed gourdcarcarB397