CmoCh11G012950 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	GATA transcription factor 15, putative
Location	Cmo_Chr11 : 8804702 .. 8806347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTCTAGGGTTTTTCCTCCCTTTTCTTATCCCTTTTCTTATCCCTTCTCTCTCCCTCTCTTCCTCTGTCGGTTCCTCTCCCTCTCCCTCTTCTCTTTTTCCACTCACTAATGATCATCTTCACTTTTCCTCGCAATACCTCCAAATGGGTATGATGGAGGTCACACAAAAGGTTGGTTTCACAGCGCTTCATACTAATCTAATCCCCTCTTCTCTGTTTTCCACAACTGAGGGAGCAATCATTACATTAATTCCACTTCTCTTCTTCAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGGTCTCTCTTATCGCCCTTTTTCTTCTTTTTCCCTCTGTTTTCATCTTCTGTTTCATCTTCAGCTTCTTCTTAGTATGTCAGATTCATGGTTTCTTTCTGATTATTCATTTCTTCTGGGTTTTTTTTTTTCGTATCCAATATCGTTTTAGCTTTCTGTTCTGTTTCTGGTTATGTTCTTCTTAATTCTTGAAACTGGGTTTCTACTCTGTTCATGTACCTGTTCTTCTTCCACCATTTTGTTTCATTTCTACTCTGTTCTGTTTCAGATTCATGGTTTGTTTGATTTTTAGCTTCTGATATGGATTCATGTCCGTCTTTGGTTCTATTTGTATTGGGTTTCTCCACTATCTATCAAACCTATCTACCCATTTCCGCAACTGTTCTTAATGTTCATCTATTTTCTCATCAATACATTCATAGTTCTCTCTAGTTTTTTTTCTACTTATTCCTCGTATTTAGCTTCTAAAGAATGAAAAACTCAAAAAGAAAAACCTCTGTTCCCCTATATGGGATTTTTGCAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTAATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGAGGAAGAGGAGGAAGAAGGTATAGAAGTAGAAGAGTTCTAACAAATACTAATTACACCAACAACAGCAGCACCTCATTACCTGTGCTAGTTTGTCACTTTCTTTTGGATGAATCTCTAAATTAATGAGATGGAAGAAACCCAAAATAGTAGGAATTGGGTTTGTTTTCAAAAGGATAGTTCTAGGAAAATCAAGAACGGAGATTATTAGGAAATTCAAGATCATATTTTGTGCAGTTGTAGTATCCTTCTGTTCTTTAGTTCATGTCTGTAAATATATGTTGATCTTGAAGAACCACAGGTATTGTTTTCAAGCTTTCAATCATAGATTACTCGTATTAACCTTTGTACTTTCATGAATACATCTAATTTCATTCTTAACACATTGGC

mRNA sequence

ATGCCGTCTAGGGTTTTTCCTCCCTTTTCTTATCCCTTTTCTTATCCCTTCTCTCTCCCTCTCTTCCTCTGTCGGTTCCTCTCCCTCTCCCTCTTCTCTTTTTCCACTCACTAATGATCATCTTCACTTTTCCTCGCAATACCTCCAAATGGGTATGATGGAGGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTAATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGAGGAAGAGGAGGAAGAAGGTATAGAAGTAGAAGAGTTCTAACAAATACTAATTACACCAACAACAGCAGCACCTCATTACCTGTGCTAGTTTGTCACTTTCTTTTGGATGAATCTCTAAATTAATGAGATGGAAGAAACCCAAAATAGTAGGAATTGGGTTTGTTTTCAAAAGGATAGTTCTAGGAAAATCAAGAACGGAGATTATTAGGAAATTCAAGATCATATTTTGTGCAGTTGTAGTATCCTTCTGTTCTTTAGTTCATGTCTGTAAATATATGTTGATCTTGAAGAACCACAGGTATTGTTTTCAAGCTTTCAATCATAGATTACTCGTATTAACCTTTGTACTTTCATGAATACATCTAATTTCATTCTTAACACATTGGC

Coding sequence (CDS)

ATGGGTATGATGGAGGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTAATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA

Homology

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BLAST of CmoCh11G012950 vs. Swiss-Prot
Match: GAT16_ARATH (GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-18
Identity = 66/150 (44.00%), Postives = 78/150 (52.00%), Query Frame = 1


Query: 15  TQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNS 74
           T + D+  K C DC T+KTPLWRGGP GPKSLCNACGIR RK+R                
Sbjct: 29  TSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR---------------- 88

Query: 75  STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNA 134
                          G T  N       SG G    GE  SL+  +M       + ++  
Sbjct: 89  --------------RGGTEDNKKLKKSSSGGGNRKFGE--SLKQSLMD------LGIRKR 139

Query: 135 SSVQKQG-KLGEEEQAAVLLMALSCGSVFA 164
           S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 149 STVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CmoCh11G012950 vs. Swiss-Prot
Match: GAT15_ARATH (GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 62/144 (43.06%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPNSSTAMGA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  N +     
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP---- 100

Query: 83  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ 142
                                  GD         SL+ R +M    EV++ ++ +  Q++
Sbjct: 101 ---------------------KFGD---------SLKQR-LMELGREVMMQRSTAENQRR 149

Query: 143 GKLGEEEQAAVLLMALS-CGSVFA 164
            KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of CmoCh11G012950 vs. Swiss-Prot
Match: GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 1


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNSSTAMGA 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +       +K++   S     
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRM------RVMMPFRE--EVVVVQ 140
           ++    ++     IN      G  D ++D   C + R       + +  F +    V V 
Sbjct: 100 LNLDHRNAK-KYKINIVDD--GKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVM 159

Query: 141 NASSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 164
             S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 KRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of CmoCh11G012950 vs. Swiss-Prot
Match: GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 13 LRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERP 72
          +R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R 
Sbjct: 16 VRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRS 75

Query: 73 NSSTAMGAVSATTSSSSG 91
          + S A   ++  +SS  G
Sbjct: 76 HKSLASKKINLLSSSHGG 91

[Close]

BLAST of CmoCh11G012950 vs. Swiss-Prot
Match: GAT21_ARATH (GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 1


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR 59
           + C DCNTTKTPLWR GP GPKSLCNACGIR RK R
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 265

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BLAST of CmoCh11G012950 vs. TrEMBL
Match: A0A0A0M1G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569090 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 99/168 (58.93%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MG M+++QKGLLL         KCCVDC TTKTPLWRGGP GPKSLCNACGIRFRKRRIS
Sbjct: 1   MGFMDLSQKGLLLAD------TKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRIS 60

Query: 61  T----NRGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSL 120
           T     R   R+K   N S+A+  VSATT+SSSGTT   TT+S G   DG+E+ GEC SL
Sbjct: 61  TRGTNRRDKKREKVNDNHSSAVATVSATTTSSSGTTITTTTSSSG--VDGDENSGECGSL 120

Query: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEE-QAAVLLMALSCGSVFA 164
           RMR+MM   E+V+VV+     Q Q K+GEEE QAA+ L+ALS  S+ +
Sbjct: 121 RMRLMMSLEEDVMVVKK-QQWQWQRKVGEEEKQAAMSLIALSNDSLIS 159

[Close]

BLAST of CmoCh11G012950 vs. TrEMBL
Match: S8CCD2_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_10161 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-25
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 1


Query: 17  LQDQTN-KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNSS 76
           L D TN K CVDC T+KTPLWRGGPAGPKSLCNACGIR RK+R +   G  ++ ++P  S
Sbjct: 21  LSDGTNIKTCVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAL-MGVTKEDKKPKKS 80

Query: 77  TAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNAS 136
                 S  +SS S TT   TTTS  G G+    + +   L+     PF  +V + +  S
Sbjct: 81  ------SHHSSSHSSTTTTTTTTSSSGGGNSSSKIWD-HHLKNGRSWPFGRDVALQRPRS 140

Query: 137 SVQKQGKLGEEEQAAVLLMALSCGSVFA 164
           +  ++ KLGEEEQAAVLLMALSCGSV+A
Sbjct: 141 NTNRRRKLGEEEQAAVLLMALSCGSVYA 160

[Close]

BLAST of CmoCh11G012950 vs. TrEMBL
Match: A5BCR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042395 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 80/162 (49.38%), Postives = 97/162 (59.88%), Query Frame = 1


Query: 3   MMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTN 62
           MM++++K  L  ++  ++  KCC DC TTKTPLWRGGPAGPKSLCNACGIR+RKRR S+ 
Sbjct: 1   MMDLSKKESL--SEEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR-SSM 60

Query: 63  RGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMM 122
            G  +KKER NS                           GS D  E L +        +M
Sbjct: 61  VGVNKKKERMNS---------------------------GSHDLSETLKQS-------LM 120

Query: 123 PFREEVVVVQNASSVQKQG-KLGEEEQAAVLLMALSCGSVFA 164
               EV++ +  SSV+KQ  KLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 ALGNEVMMQRQRSSVKKQRRKLGEEEQAAVLLMALSCGSVFA 125

[Close]

BLAST of CmoCh11G012950 vs. TrEMBL
Match: A0A061F4J3_THECC (GATA transcription factor 15, putative OS=Theobroma cacao GN=TCM_026732 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-24
Identity = 79/177 (44.63%), Postives = 104/177 (58.76%), Query Frame = 1


Query: 1   MGMMEVTQKGLLLRTQLQDQTNK-CCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR- 60
           MG+M++ +K  L    +  + NK  C DC TTKTPLWRGGPAGPKSLCNACGIR+RK+R 
Sbjct: 1   MGVMDLREKKSLSEVVMMSENNKKFCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 60

Query: 61  --ISTNRGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSL 120
             +  N+G  +KKER  SS +    + T+S+S  TT +      G         G   S+
Sbjct: 61  AMLGLNKGPEKKKERSQSSHSSSTTTTTSSASVATTNVGDKKPSGQLN------GLSESV 120

Query: 121 RMRVMMPFREEVVVVQNASS-----------VQKQGKLGEEEQAAVLLMALSCGSVF 163
           +MR +     EV + +++SS            Q++ KLGEEEQAA  LMALSCGSVF
Sbjct: 121 KMR-LYALGSEVFLQRSSSSSLLSGVVKKQRCQRRRKLGEEEQAAFSLMALSCGSVF 170

[Close]

BLAST of CmoCh11G012950 vs. TrEMBL
Match: F6I4R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01520 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-24
Identity = 79/161 (49.07%), Postives = 96/161 (59.63%), Query Frame = 1


Query: 4   MEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNR 63
           M++++K  L  ++  ++  KCC DC TTKTPLWRGGPAGPKSLCNACGIR+RKRR S+  
Sbjct: 1   MDLSKKESL--SEEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR-SSMV 60

Query: 64  GYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMP 123
           G  +KKER NS                           GS D  E L +        +M 
Sbjct: 61  GVNKKKERMNS---------------------------GSHDLSETLKQS-------LMA 120

Query: 124 FREEVVVVQNASSVQKQG-KLGEEEQAAVLLMALSCGSVFA 164
              EV++ +  SSV+KQ  KLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 LGNEVMMQRQRSSVKKQRRKLGEEEQAAVLLMALSCGSVFA 124

[Close]

BLAST of CmoCh11G012950 vs. TAIR10
Match: AT5G49300.1 (AT5G49300.1 GATA transcription factor 16)

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-19
Identity = 66/150 (44.00%), Postives = 78/150 (52.00%), Query Frame = 1


Query: 15  TQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNS 74
           T + D+  K C DC T+KTPLWRGGP GPKSLCNACGIR RK+R                
Sbjct: 29  TSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR---------------- 88

Query: 75  STAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNA 134
                          G T  N       SG G    GE  SL+  +M       + ++  
Sbjct: 89  --------------RGGTEDNKKLKKSSSGGGNRKFGE--SLKQSLMD------LGIRKR 139

Query: 135 SSVQKQG-KLGEEEQAAVLLMALSCGSVFA 164
           S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 149 STVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CmoCh11G012950 vs. TAIR10
Match: AT3G06740.1 (AT3G06740.1 GATA transcription factor 15)

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-18
Identity = 62/144 (43.06%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPNSSTAMGA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  N +     
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP---- 100

Query: 83  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQ 142
                                  GD         SL+ R +M    EV++ ++ +  Q++
Sbjct: 101 ---------------------KFGD---------SLKQR-LMELGREVMMQRSTAENQRR 149

Query: 143 GKLGEEEQAAVLLMALS-CGSVFA 164
            KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of CmoCh11G012950 vs. TAIR10
Match: AT3G16870.1 (AT3G16870.1 GATA transcription factor 17)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 1


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNSSTAMGA 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +       +K++   S     
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  VSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRM------RVMMPFRE--EVVVVQ 140
           ++    ++     IN      G  D ++D   C + R       + +  F +    V V 
Sbjct: 100 LNLDHRNAK-KYKINIVDD--GKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVM 159

Query: 141 NASSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 164
             S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 KRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of CmoCh11G012950 vs. TAIR10
Match: AT4G16141.1 (AT4G16141.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 59/166 (35.54%), Postives = 84/166 (50.60%), Query Frame = 1


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR---ISTNRGYVRKKERPNSSTA 80
           T K CVDC T++TPLWRGGPAGPKSLCNACGI+ RK+R   +   +  ++ K + N++  
Sbjct: 35  TKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSKSNNN-- 94

Query: 81  MGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSV 140
           +G  S    +  G   +N   +    G  +   GE  +++ ++            N  +V
Sbjct: 95  LGLESRNVKTGKG-EPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNNNKKNV 154

Query: 141 QKQG------------------------KLGEEEQAAVLLMALSCG 160
           ++ G                        KLGEEE+AAVLLMALSCG
Sbjct: 155 KRVGRFLDFGFKVPAMKRSAVEKKRLWRKLGEEERAAVLLMALSCG 197

[Close]

BLAST of CmoCh11G012950 vs. TAIR10
Match: AT5G26930.1 (AT5G26930.1 GATA transcription factor 23)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-12
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 13 LRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERP 72
          +R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R 
Sbjct: 16 VRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRS 75

Query: 73 NSSTAMGAVSATTSSSSG 91
          + S A   ++  +SS  G
Sbjct: 76 HKSLASKKINLLSSSHGG 91

[Close]

BLAST of CmoCh11G012950 vs. NCBI nr
Match: gi|778662321|ref|XP_011659732.1| (PREDICTED: GATA transcription factor 16-like [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-36
Identity = 99/168 (58.93%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MG M+++QKGLLL         KCCVDC TTKTPLWRGGP GPKSLCNACGIRFRKRRIS
Sbjct: 1   MGFMDLSQKGLLLAD------TKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRIS 60

Query: 61  T----NRGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSL 120
           T     R   R+K   N S+A+  VSATT+SSSGTT   TT+S G   DG+E+ GEC SL
Sbjct: 61  TRGTNRRDKKREKVNDNHSSAVATVSATTTSSSGTTITTTTSSSG--VDGDENSGECGSL 120

Query: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEE-QAAVLLMALSCGSVFA 164
           RMR+MM   E+V+VV+     Q Q K+GEEE QAA+ L+ALS  S+ +
Sbjct: 121 RMRLMMSLEEDVMVVKK-QQWQWQRKVGEEEKQAAMSLIALSNDSLIS 159

[Close]

BLAST of CmoCh11G012950 vs. NCBI nr
Match: gi|659099413|ref|XP_008450587.1| (PREDICTED: GATA transcription factor 16-like isoform X2 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 99/170 (58.24%), Postives = 119/170 (70.00%), Query Frame = 1


Query: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRI- 60
           MG ++++QKGLLL         KCCVDC TTKTPLWRGGP GPKSLCNACGIRFRKR+I 
Sbjct: 21  MGFVDLSQKGLLLAD------TKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRKIF 80

Query: 61  --STNRG---YVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECR 120
              TNRG     R++ R N S+ +  VSATT+SSSGTT   TTTSG    DG+E+ GEC 
Sbjct: 81  TRRTNRGGRDKKRERVRDNHSSTVAIVSATTTSSSGTTTTTTTTSG---VDGDENSGECG 140

Query: 121 SLRMRVMMPFREEVVVVQNASSVQKQGKLGEEE-QAAVLLMALSCGSVFA 164
           S RM++MM   E+V+VV+     Q Q K+GEEE QAAV LMALS GS+ +
Sbjct: 141 SSRMKIMMGLEEDVMVVKK-HRWQWQRKVGEEEKQAAVSLMALSNGSLIS 180

[Close]

BLAST of CmoCh11G012950 vs. NCBI nr
Match: gi|659099411|ref|XP_008450586.1| (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 7.6e-32
Identity = 99/189 (52.38%), Postives = 119/189 (62.96%), Query Frame = 1


Query: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPK---------------- 60
           MG ++++QKGLLL         KCCVDC TTKTPLWRGGP GPK                
Sbjct: 21  MGFVDLSQKGLLLAD------TKCCVDCKTTKTPLWRGGPTGPKEIFISSIKQTSLPIWG 80

Query: 61  ---SLCNACGIRFRKRRISTNR----GYVRKKER--PNSSTAMGAVSATTSSSSGTTAIN 120
              SLCNACGIRFRKR+I T R    G  +K+ER   N S+ +  VSATT+SSSGTT   
Sbjct: 81  FLQSLCNACGIRFRKRKIFTRRTNRGGRDKKRERVRDNHSSTVAIVSATTTSSSGTTTTT 140

Query: 121 TTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQGKLGEEE-QAAVLLM 164
           TTTSG    DG+E+ GEC S RM++MM   E+V+VV+     Q Q K+GEEE QAAV LM
Sbjct: 141 TTTSGV---DGDENSGECGSSRMKIMMGLEEDVMVVKK-HRWQWQRKVGEEEKQAAVSLM 199

[Close]

BLAST of CmoCh11G012950 vs. NCBI nr
Match: gi|527195351|gb|EPS64619.1| (hypothetical protein M569_10161 [Genlisea aurea])

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 1


Query: 17  LQDQTN-KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPNSS 76
           L D TN K CVDC T+KTPLWRGGPAGPKSLCNACGIR RK+R +   G  ++ ++P  S
Sbjct: 21  LSDGTNIKTCVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAL-MGVTKEDKKPKKS 80

Query: 77  TAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNAS 136
                 S  +SS S TT   TTTS  G G+    + +   L+     PF  +V + +  S
Sbjct: 81  ------SHHSSSHSSTTTTTTTTSSSGGGNSSSKIWD-HHLKNGRSWPFGRDVALQRPRS 140

Query: 137 SVQKQGKLGEEEQAAVLLMALSCGSVFA 164
           +  ++ KLGEEEQAAVLLMALSCGSV+A
Sbjct: 141 NTNRRRKLGEEEQAAVLLMALSCGSVYA 160

[Close]

BLAST of CmoCh11G012950 vs. NCBI nr
Match: gi|731415804|ref|XP_002278369.2| (PREDICTED: GATA transcription factor 16-like [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 80/162 (49.38%), Postives = 97/162 (59.88%), Query Frame = 1


Query: 3   MMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTN 62
           MM++++K  L  ++  ++  KCC DC TTKTPLWRGGPAGPKSLCNACGIR+RKRR S+ 
Sbjct: 1   MMDLSKKESL--SEEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR-SSM 60

Query: 63  RGYVRKKERPNSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMM 122
            G  +KKER NS                           GS D  E L +        +M
Sbjct: 61  VGVNKKKERMNS---------------------------GSHDLSETLKQS-------LM 120

Query: 123 PFREEVVVVQNASSVQKQG-KLGEEEQAAVLLMALSCGSVFA 164
               EV++ +  SSV+KQ  KLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 ALGNEVMMQRQRSSVKKQRRKLGEEEQAAVLLMALSCGSVFA 125

The following BLAST results are available for this feature:

BLAST of CmoCh11G012950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GAT16_ARATH	8.2e-18	44.00	GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1	[more]
GAT15_ARATH	1.2e-16	43.06	GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2	[more]
GAT17_ARATH	2.2e-15	40.91	GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1	[more]
GAT23_ARATH	3.3e-11	48.72	GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2	[more]
GAT21_ARATH	4.4e-11	80.56	GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2	[more]

BLAST of CmoCh11G012950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1G9_CUCSA	3.6e-36	58.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569090 PE=4 SV=1	[more]
S8CCD2_9LAMI	2.8e-25	51.35	Uncharacterized protein OS=Genlisea aurea GN=M569_10161 PE=4 SV=1	[more]
A5BCR3_VITVI	1.1e-24	49.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042395 PE=4 SV=1	[more]
A0A061F4J3_THECC	3.1e-24	44.63	GATA transcription factor 15, putative OS=Theobroma cacao GN=TCM_026732 PE=4 SV=...	[more]
F6I4R1_VITVI	3.1e-24	49.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01520 PE=4 SV=...	[more]

BLAST of CmoCh11G012950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49300.1	4.6e-19	44.00	GATA transcription factor 16	[more]
AT3G06740.1	6.7e-18	43.06	GATA transcription factor 15	[more]
AT3G16870.1	1.3e-16	40.91	GATA transcription factor 17	[more]
AT4G16141.1	1.1e-15	35.54	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	1.9e-12	48.72	GATA transcription factor 23	[more]

BLAST of CmoCh11G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662321\|ref\|XP_011659732.1\|	5.1e-36	58.93	PREDICTED: GATA transcription factor 16-like [Cucumis sativus]	[more]
gi\|659099413\|ref\|XP_008450587.1\|	2.5e-35	58.24	PREDICTED: GATA transcription factor 16-like isoform X2 [Cucumis melo]	[more]
gi\|659099411\|ref\|XP_008450586.1\|	7.6e-32	52.38	PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo]	[more]
gi\|527195351\|gb\|EPS64619.1\|	4.1e-25	51.35	hypothetical protein M569_10161 [Genlisea aurea]	[more]
gi\|731415804\|ref\|XP_002278369.2\|	1.5e-24	49.38	PREDICTED: GATA transcription factor 16-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000679	Znf_GATA
IPR013088	Znf_NHR/GATA

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0008270	zinc ion binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012950.1	CmoCh11G012950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 25..58 score: 8.7
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 19..76 score: 4.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 25..50 scor
IPR000679	Zinc finger, GATA-type	PROFILE	PS50114	GATA_ZN_FINGER_2	coord: 19..55 score: 12
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	G3DSA:3.30.50.10		coord: 23..59 score: 6.0
None	No IPR available	PANTHER	PTHR10071	TRANSCRIPTION FACTOR GATA GATA BINDING FACTOR	coord: 18..72 score: 3.1E-22coord: 102..140 score: 3.1
None	No IPR available	PANTHER	PTHR10071:SF203	GATA TRANSCRIPTION FACTOR 15-RELATED	coord: 18..72 score: 3.1E-22coord: 102..140 score: 3.1
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 16..67 score: 1.24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G012950	CmaCh11G012380	Cucurbita maxima (Rimu)	cmacmoB115
CmoCh11G012950	Cla005181	Watermelon (97103) v1	cmowmB085
CmoCh11G012950	Csa1G569090	Cucumber (Chinese Long) v2	cmocuB100
CmoCh11G012950	ClCG03G017510	Watermelon (Charleston Gray)	cmowcgB100
CmoCh11G012950	CSPI01G26090	Wild cucumber (PI 183967)	cmocpiB102
CmoCh11G012950	Lsi06G000780	Bottle gourd (USVL1VR-Ls)	cmolsiB136
CmoCh11G012950	Cp4.1LG04g08520	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G012950	MELO3C015277.2	Melon (DHL92) v3.6.1	cmomedB122
CmoCh11G012950	CsaV3_1G038510	Cucumber (Chinese Long) v3	cmocucB0111
CmoCh11G012950	Cla97C03G067890	Watermelon (97103) v2	cmowmbB098
CmoCh11G012950	Bhi02G001793	Wax gourd	cmowgoB0157
CmoCh11G012950	CsGy1G025360	Cucumber (Gy14) v2	cgybcmoB048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012950	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G012950	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G012950	Wax gourd	cmowgoB0165
CmoCh11G012950	Cucurbita moschata (Rifu)	cmocmoB048
CmoCh11G012950	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G012950	Cucurbita maxima (Rimu)	cmacmoB079
CmoCh11G012950	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G012950	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G012950	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G012950	Watermelon (Charleston Gray)	cmowcgB102
CmoCh11G012950	Bottle gourd (USVL1VR-Ls)	cmolsiB122
CmoCh11G012950	Cucumber (Gy14) v2	cgybcmoB036