CmoCh11G012620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA glycosylase superfamily protein
Location	Cmo_Chr11 : 8059926 .. 8061430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGGTTCAATGCACTTCCTTTTCGGCAGCCGCCATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGGTATTCACTTGATCTTGAATGCAATTTCCAATTTCATACTGTACTATATCTTTCCCCATGGCACATAAACTTGATTTGCTTTCATTACAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

mRNA sequence

AGTCGGTTCAATGCACTTCCTTTTCGGCAGCCGCCATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

Coding sequence (CDS)

ATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

Homology

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BLAST of CmoCh11G012620 vs. Swiss-Prot
Match: MBD4L_ARATH (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4L PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-07
Identity = 80/251 (31.87%), Postives = 110/251 (43.82%), Query Frame = 1


Query: 195 DERVVSRHF--QESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDVNVTDQPIKRSRV 254
           D+ V   H   QE        R VS YFQ S + + +  E  D D   +       +++V
Sbjct: 126 DDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQS-KEGCDSDSVCSKEGCSKVQAKV 185

Query: 255 GQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKR---VRFVSRYFQNSEKNPEV 314
            +     +    S  D+      S  +S R  ++ G+ KR   VR VS YFQ S  + + 
Sbjct: 186 PRVSPYFQASTISQCDSDIV---SSSQSGRNYRK-GSSKRQVKVRRVSPYFQESTVSEQ- 245

Query: 315 EIEVSPPLQNSKTKQQGERIV--SRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRKPA 374
                 P Q  K  +   ++V  SR+F     Q  VN  Q+                   
Sbjct: 246 ------PNQAPKGLRNYFKVVKVSRYFHADGIQ--VNESQK------------------E 305

Query: 375 KERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVI 434
           K R VR      P   LS  +   + Y RK+ D+TW PP S   LLQ+DH +DPWRVLVI
Sbjct: 306 KSRNVRKTPIVSP--VLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVI 342

Query: 435 CMLLNRTTGQQ 439
           CMLLN+T+G Q
Sbjct: 366 CMLLNKTSGAQ 342

[Close]

BLAST of CmoCh11G012620 vs. TrEMBL
Match: A0A0A0KRW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 201/334 (60.18%), Postives = 244/334 (73.05%), Query Frame = 1


Query: 114 TVEDVQEVSPK--------TPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRV 173
           T+ D+Q   P         +P+SE     VHEPPILTLED+QN K   Q   +P LARRV
Sbjct: 63  TLHDLQTPEPSNHHNESLASPSSE-----VHEPPILTLEDLQNGKLPRQSPKQPSLARRV 122

Query: 174 LRFYRQFGFDEQIVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEI 233
           L FYR+FGFD++++Q T  SV NS+P Q   RVVSR+FQ S+S QQ +RIVSRYFQ S  
Sbjct: 123 LSFYREFGFDKKLLQATSHSVLNSVPAQEGTRVVSRYFQNSRSTQQSKRIVSRYFQESVK 182

Query: 234 ERAAHNEDEDEDEDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVK 293
           ER AH   EDE++  N+T+QP KRS      KRRRKDV   SDNSK    S+ K++R V+
Sbjct: 183 ERTAHY--EDENDGGNLTEQPSKRS-----SKRRRKDVTPGSDNSKTNHHSVGKTARSVQ 242

Query: 294 ESGTDKRVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNN 353
           +SGTD +VR VS YFQ+ EK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNN
Sbjct: 243 KSGTDTQVRIVSGYFQSYEKSLEMDREVSPSLQNSKSNQQEEKVVSRFFLKSGKQQAVNN 302

Query: 354 QQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWK 413
           Q+E  +  +QCAKSVKR+RKP  ERK +DK S+ +PRTTL+A ELFLEAYRRKS  DTWK
Sbjct: 303 QEEATEQLNQCAKSVKRLRKPVNERKEKDKTSSTKPRTTLTAAELFLEAYRRKSPYDTWK 362

Query: 414 PPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           PP SG RLLQ DHAYDPWRVLVICMLLNRT+GQQ
Sbjct: 363 PPTSGTRLLQHDHAYDPWRVLVICMLLNRTSGQQ 384

[Close]

BLAST of CmoCh11G012620 vs. TrEMBL
Match: V7D0M5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_L0001001g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 365 KPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRV 424
           KP + +    + S   +  LSA E + EAY+RK+ D TWKPP S   L+Q+DHA+DPWRV
Sbjct: 66  KPEENKSSCSEKSIEIKKNLSASEKWDEAYKRKTPDITWKPPRSATVLIQEDHAHDPWRV 125

Query: 425 LVICMLLNRTTGQQ 439
           LVICMLLNRT+G+Q
Sbjct: 126 LVICMLLNRTSGRQ 139

[Close]

BLAST of CmoCh11G012620 vs. TrEMBL
Match: V7D3X8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_L0001001g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 365 KPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRV 424
           KP + +    + S   +  LSA E + EAY+RK+ D TWKPP S   L+Q+DHA+DPWRV
Sbjct: 58  KPEENKSSCSEKSIEIKKNLSASEKWDEAYKRKTPDITWKPPRSATVLIQEDHAHDPWRV 117

Query: 425 LVICMLLNRTTGQQ 439
           LVICMLLNRT+G+Q
Sbjct: 118 LVICMLLNRTSGRQ 131

[Close]

BLAST of CmoCh11G012620 vs. TrEMBL
Match: B9RKX6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1564050 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 68/160 (42.50%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 297 SRYFQNSEKNPEVEIEV---SPPLQNSKTKQQGERI---------------VSRFFQKSE 356
           +R  +N + N  V I+V   SP    S  +Q+  +I               VS +FQK  
Sbjct: 355 TRNIENEKPNSRVHIQVRKVSPNFNLSIGQQECMKIKPLKPCERVGLTVRNVSPYFQK-- 414

Query: 357 EQEVVNNQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKS 416
               V  Q+E     S    + K  +K   E+K R    AR   TLSA E   EAYRRK+
Sbjct: 415 ----VPKQEEEEAADSNMIDN-KHGQKKLPEKKKRP---ARKSITLSAAEKRSEAYRRKT 474

Query: 417 SDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
            D+TWKPP S   LLQ+DHA DPWRVLVICMLLN TTG+Q
Sbjct: 475 PDNTWKPPRSDFGLLQEDHASDPWRVLVICMLLNCTTGKQ 504

[Close]

BLAST of CmoCh11G012620 vs. TrEMBL
Match: A0A151SQL7_CAJCA (Methyl-CpG-binding domain protein 4 OS=Cajanus cajan GN=KK1_003378 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 61/184 (33.15%), Postives = 94/184 (51.09%), Query Frame = 1


Query: 255 YRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYFQNSEKNPEVEIEVS 314
           ++KR   +    + N     +   K ++ + +      +R+VS YF N       +I V 
Sbjct: 91  FKKRAISNKLRENGNEATTSKIKSKKTKPIVQKNVAHGIRYVSPYFHNDNGK---KINVK 150

Query: 315 PPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRKPAKERKVRD 374
           P +++SK+    E I    F+ S E ++  N        S C++    I++         
Sbjct: 151 PLVKHSKS----ESIDLHAFENSAEDQLEVNT-------SSCSEESIEIKRK-------- 210

Query: 375 KVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRT 434
                    LSA E++ EAY+R++ D+TWKPP S   L+Q+DH +DPWRVLVICMLLNRT
Sbjct: 211 ---------LSALEIWDEAYKRRTPDNTWKPPRSATGLIQEDHIHDPWRVLVICMLLNRT 243

Query: 435 TGQQ 439
           TG+Q
Sbjct: 271 TGRQ 243

[Close]

BLAST of CmoCh11G012620 vs. TAIR10
Match: AT3G07930.3 (AT3G07930.3 DNA glycosylase superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-09
Identity = 80/251 (31.87%), Postives = 110/251 (43.82%), Query Frame = 1


Query: 195 DERVVSRHF--QESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDVNVTDQPIKRSRV 254
           D+ V   H   QE        R VS YFQ S + + +  E  D D   +       +++V
Sbjct: 126 DDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQS-KEGCDSDSVCSKEGCSKVQAKV 185

Query: 255 GQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKR---VRFVSRYFQNSEKNPEV 314
            +     +    S  D+      S  +S R  ++ G+ KR   VR VS YFQ S  + + 
Sbjct: 186 PRVSPYFQASTISQCDSDIV---SSSQSGRNYRK-GSSKRQVKVRRVSPYFQESTVSEQ- 245

Query: 315 EIEVSPPLQNSKTKQQGERIV--SRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRKPA 374
                 P Q  K  +   ++V  SR+F     Q  VN  Q+                   
Sbjct: 246 ------PNQAPKGLRNYFKVVKVSRYFHADGIQ--VNESQK------------------E 305

Query: 375 KERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVI 434
           K R VR      P   LS  +   + Y RK+ D+TW PP S   LLQ+DH +DPWRVLVI
Sbjct: 306 KSRNVRKTPIVSP--VLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVI 342

Query: 435 CMLLNRTTGQQ 439
           CMLLN+T+G Q
Sbjct: 366 CMLLNKTSGAQ 342

[Close]

BLAST of CmoCh11G012620 vs. NCBI nr
Match: gi|700197193|gb|KGN52370.1| (hypothetical protein Csa_5G630730 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 201/334 (60.18%), Postives = 244/334 (73.05%), Query Frame = 1


Query: 114 TVEDVQEVSPK--------TPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRV 173
           T+ D+Q   P         +P+SE     VHEPPILTLED+QN K   Q   +P LARRV
Sbjct: 63  TLHDLQTPEPSNHHNESLASPSSE-----VHEPPILTLEDLQNGKLPRQSPKQPSLARRV 122

Query: 174 LRFYRQFGFDEQIVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEI 233
           L FYR+FGFD++++Q T  SV NS+P Q   RVVSR+FQ S+S QQ +RIVSRYFQ S  
Sbjct: 123 LSFYREFGFDKKLLQATSHSVLNSVPAQEGTRVVSRYFQNSRSTQQSKRIVSRYFQESVK 182

Query: 234 ERAAHNEDEDEDEDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVK 293
           ER AH   EDE++  N+T+QP KRS      KRRRKDV   SDNSK    S+ K++R V+
Sbjct: 183 ERTAHY--EDENDGGNLTEQPSKRS-----SKRRRKDVTPGSDNSKTNHHSVGKTARSVQ 242

Query: 294 ESGTDKRVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNN 353
           +SGTD +VR VS YFQ+ EK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNN
Sbjct: 243 KSGTDTQVRIVSGYFQSYEKSLEMDREVSPSLQNSKSNQQEEKVVSRFFLKSGKQQAVNN 302

Query: 354 QQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWK 413
           Q+E  +  +QCAKSVKR+RKP  ERK +DK S+ +PRTTL+A ELFLEAYRRKS  DTWK
Sbjct: 303 QEEATEQLNQCAKSVKRLRKPVNERKEKDKTSSTKPRTTLTAAELFLEAYRRKSPYDTWK 362

Query: 414 PPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           PP SG RLLQ DHAYDPWRVLVICMLLNRT+GQQ
Sbjct: 363 PPTSGTRLLQHDHAYDPWRVLVICMLLNRTSGQQ 384

[Close]

BLAST of CmoCh11G012620 vs. NCBI nr
Match: gi|449449218|ref|XP_004142362.1| (PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 201/334 (60.18%), Postives = 244/334 (73.05%), Query Frame = 1


Query: 114 TVEDVQEVSPK--------TPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRV 173
           T+ D+Q   P         +P+SE     VHEPPILTLED+QN K   Q   +P LARRV
Sbjct: 63  TLHDLQTPEPSNHHNESLASPSSE-----VHEPPILTLEDLQNGKLPRQSPKQPSLARRV 122

Query: 174 LRFYRQFGFDEQIVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEI 233
           L FYR+FGFD++++Q T  SV NS+P Q   RVVSR+FQ S+S QQ +RIVSRYFQ S  
Sbjct: 123 LSFYREFGFDKKLLQATSHSVLNSVPAQEGTRVVSRYFQNSRSTQQSKRIVSRYFQESVK 182

Query: 234 ERAAHNEDEDEDEDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVK 293
           ER AH   EDE++  N+T+QP KRS      KRRRKDV   SDNSK    S+ K++R V+
Sbjct: 183 ERTAHY--EDENDGGNLTEQPSKRS-----SKRRRKDVTPGSDNSKTNHHSVGKTARSVQ 242

Query: 294 ESGTDKRVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNN 353
           +SGTD +VR VS YFQ+ EK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNN
Sbjct: 243 KSGTDTQVRIVSGYFQSYEKSLEMDREVSPSLQNSKSNQQEEKVVSRFFLKSGKQQAVNN 302

Query: 354 QQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWK 413
           Q+E  +  +QCAKSVKR+RKP  ERK +DK S+ +PRTTL+A ELFLEAYRRKS  DTWK
Sbjct: 303 QEEATEQLNQCAKSVKRLRKPVNERKEKDKTSSTKPRTTLTAAELFLEAYRRKSPYDTWK 362

Query: 414 PPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           PP SG RLLQ DHAYDPWRVLVICMLLNRT+GQQ
Sbjct: 363 PPTSGTRLLQHDHAYDPWRVLVICMLLNRTSGQQ 384

[Close]

BLAST of CmoCh11G012620 vs. NCBI nr
Match: gi|659121238|ref|XP_008460559.1| (PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 7.0e-91
Identity = 230/445 (51.69%), Postives = 280/445 (62.92%), Query Frame = 1


Query: 1   MTATTIMNPNLSPPSSSS--FPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDF 60
           M ATT +NPNL+PPS  S  +P  LFS                               +F
Sbjct: 1   MAATTSINPNLTPPS--SSSYPHDLFS-------------------------------EF 60

Query: 61  TQKRTTLMAQNSPISTLEVLQTSESNHQKTA----AGQEIPILCIEDLQDNPKRGSSTLT 120
             + T+      P         S+S HQ       + Q  PI  + DLQ        T  
Sbjct: 61  VFRGTSRSRFRFP--------PSKSAHQNPNPYQDSTQHSPISTLYDLQ--------TSE 120

Query: 121 VEDVQEVSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGF 180
             +    S  +P+SE +     EPPILTLED+QN K   Q   +P LARRVL FYR+FGF
Sbjct: 121 PNNHHNKSLASPSSEAD-----EPPILTLEDLQNGKLPLQSPKKPSLARRVLSFYREFGF 180

Query: 181 DEQIVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDE 240
           D++++Q T  SV NS PVQ   RVVSR+FQ S+S QQ ERIVSRYF+ S  ERAAH ED 
Sbjct: 181 DKKLLQATSHSVLNSEPVQEGTRVVSRYFQNSRSTQQRERIVSRYFKKSVKERAAHYED- 240

Query: 241 DEDEDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVR 300
            E++D N+T+QP KRS      KRRRKDV  SS NSK    S+ K+SR V++S TD R R
Sbjct: 241 -ENDDGNLTEQPSKRS-----SKRRRKDVDPSSVNSKTNHHSMGKTSRSVQKSRTDTRAR 300

Query: 301 FVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPS 360
            VS YFQ SEK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNNQ+E  +  +
Sbjct: 301 IVSGYFQYSEKSLEMDREVSPSLQNSKSNQQEEKMVSRFFLKSGKQQAVNNQEEATEQLN 360

Query: 361 QCAKSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLL 420
           QCAKSVKR+RKP  ERK ++K S+ +PRTTL+A ELFLEAYRRKS DDTWKPPPSG RLL
Sbjct: 361 QCAKSVKRVRKPVNERKQKNKTSSTKPRTTLTAAELFLEAYRRKSPDDTWKPPPSGTRLL 384

Query: 421 QQDHAYDPWRVLVICMLLNRTTGQQ 439
           Q DHAYDPWRVLVICMLLNRT+G+Q
Sbjct: 421 QHDHAYDPWRVLVICMLLNRTSGRQ 384

[Close]

BLAST of CmoCh11G012620 vs. NCBI nr
Match: gi|747057960|ref|XP_011075305.1| (PREDICTED: uncharacterized protein LOC105159804 [Sesamum indicum])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1


Query: 288  GTDKRVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQ 347
            G  K+V  VS YF      P+ E +V+P    +++K+   R +S +F  ++++E   N+ 
Sbjct: 890  GARKKVCVVSPYFAC----PDAEDKVTPKEGKTESKKLQVRKISPYFCSTQQEE--ENEN 949

Query: 348  EVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPP 407
             V   P+         +   + RK + K +  P   L+A +   EAY RK+ D+TWKPP 
Sbjct: 950  TVSLGPT---------KSEIQARKTKRKKAHTP--VLTAAQKRDEAYERKTPDNTWKPPR 1009

Query: 408  SGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
            S   LLQ+DHA+DPWRVLVICMLLN+TTG Q
Sbjct: 1010 SPFNLLQEDHAFDPWRVLVICMLLNQTTGLQ 1023

[Close]

BLAST of CmoCh11G012620 vs. NCBI nr
Match: gi|593731580|ref|XP_007163987.1| (hypothetical protein PHAVU_L0001001g [Phaseolus vulgaris])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 365 KPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRV 424
           KP + +    + S   +  LSA E + EAY+RK+ D TWKPP S   L+Q+DHA+DPWRV
Sbjct: 58  KPEENKSSCSEKSIEIKKNLSASEKWDEAYKRKTPDITWKPPRSATVLIQEDHAHDPWRV 117

Query: 425 LVICMLLNRTTGQQ 439
           LVICMLLNRT+G+Q
Sbjct: 118 LVICMLLNRTSGRQ 131

The following BLAST results are available for this feature:

BLAST of CmoCh11G012620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD4L_ARATH	1.3e-07	31.87	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4...	[more]

BLAST of CmoCh11G012620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRW9_CUCSA	1.2e-92	60.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1	[more]
V7D0M5_PHAVU	1.1e-13	55.41	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_L0001001g PE=4...	[more]
V7D3X8_PHAVU	1.1e-13	55.41	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_L0001001g PE=4 SV=1	[more]
B9RKX6_RICCO	1.8e-13	42.50	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1564050 PE=4 SV=1	[more]
A0A151SQL7_CAJCA	1.8e-13	33.15	Methyl-CpG-binding domain protein 4 OS=Cajanus cajan GN=KK1_003378 PE=4 SV=1	[more]

BLAST of CmoCh11G012620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07930.3	7.2e-09	31.87	DNA glycosylase superfamily protein	[more]

BLAST of CmoCh11G012620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197193\|gb\|KGN52370.1\|	1.7e-92	60.18	hypothetical protein Csa_5G630730 [Cucumis sativus]	[more]
gi\|449449218\|ref\|XP_004142362.1\|	1.7e-92	60.18	PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus]	[more]
gi\|659121238\|ref\|XP_008460559.1\|	7.0e-91	51.69	PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo]	[more]
gi\|747057960\|ref\|XP_011075305.1\|	1.8e-14	39.74	PREDICTED: uncharacterized protein LOC105159804 [Sesamum indicum]	[more]
gi\|593731580\|ref\|XP_007163987.1\|	1.5e-13	55.41	hypothetical protein PHAVU_L0001001g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011257	DNA_glycosylase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012620.1	CmoCh11G012620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011257	DNA glycosylase	GENE3D	G3DSA:1.10.340.30		coord: 396..438 score: 1.
None	No IPR available	PANTHER	PTHR15074	5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE	coord: 14..61 score: 3.6E-15coord: 377..438 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G012620	CmaCh11G011780	Cucurbita maxima (Rimu)	cmacmoB119
CmoCh11G012620	Cp4.1LG04g00110	Cucurbita pepo (Zucchini)	cmocpeB130
CmoCh11G012620	Carg17008	Silver-seed gourd	carcmoB0632

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012620	Cucurbita moschata (Rifu)	cmocmoB048
CmoCh11G012620	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G012620	Cucumber (Gy14) v1	cgycmoB0051
CmoCh11G012620	Cucurbita maxima (Rimu)	cmacmoB079
CmoCh11G012620	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G012620	Wild cucumber (PI 183967)	cmocpiB099
CmoCh11G012620	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G012620	Cucumber (Chinese Long) v2	cmocuB096
CmoCh11G012620	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G012620	Cucumber (Gy14) v2	cgybcmoB036
CmoCh11G012620	Cucumber (Gy14) v2	cgybcmoB049
CmoCh11G012620	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G012620	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G012620	Cucumber (Chinese Long) v3	cmocucB0109