Carg17008 (gene) Silver-seed gourd

Overview
NameCarg17008
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmethyl-CpG-binding domain protein 4-like protein
LocationCucurbita_argyrosperma_scaffold_061 : 1091110 .. 1094476 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAACTACAATCATGAACCCTAATCCCTCTCCTCCCTCCTCATCATTCCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTCACCCAAAAGAGGAGCAGTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAAGCAAATCATCAGAAGACAGCCGCATGGCACGAGATTCCGATTTTGTGTATTGAGGATCTTCAGGATGATCCGAAGCGTGAGATTTCCACATTAACCATAGAGGATGTCCAAGAAGTTTCACCCAAAACCCCAACTTCTGAAAGGGAAAGGGTTTCAGCGCATGAGCCTCCTATATTAACTCTAGAGGATCTTCAAAATGCAAAATCGGACCATCAACCGGCGATGAAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACTCCACCTCCTGTCCGAAATTCCATGCCAGTTCAACTTGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAACCCAGCAAGGAGAACGAATTGTATCACGCTACTTTCAACACTCGGAGATAGAACAAGCATCCCATAATGAGGATGAGGATGTCAATGCCACAGATCAACCAATTAAAAGATCAGGGGTCGGAGAATACAGAAAAAGGAGGAGGAAAGACGTAGCTCCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATTAGAAAATCCTCACGTTCTGTTAAAAAATCGGGAACGGATAAACGAGTGCGGATTGTTTCGCGCTATTTCCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTTCATTACAAAATTCAAAAACAAATCAACAAGGAGAGCGGGTAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAGCAAGAGGTTACACAGCAGCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGCCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGGTATTCACTTGATCTTGAATGCAATTTCCAGTTTCATACAGTACTATATCTTCCCCATGGCACATAAACTTGATTTGCTTTCACTACAGTTTTGCCACTCCACGACTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGAATCAAGTAAACAAGAAAAGTGGATAAATGTCGTCTCATTCAACCTTGTCAATTACCATATTCACTATTTCCTTTGAAGATATTCTGTTAGGTATCCAGAGTATTCTTTACCTATTGAATTATACTATAGTATTCTCCAATACTCACTTCCTTGACCAAATCAGCACTTTACCGTCAGCTGCCTTACCAACTCACATTCCCTGTGTCCCACGGTAATACGATATCCACAATACCTAGTTGTAGACCCACCCCTTACTTTGTTAAGTGAATACACCCTGAGAATTGGTGTCTATTAGTTTACAAAGCATTGTTTTGGGGTATTTGGAAAGATAGGAACCAAATTAATTGAAGTGGATGATAGGCTGAAACTATTTAGGCATCAAAGAGCTACTTTGTGGTGCCATTTCTAGTGAATTTTGGTATCATTCTTCGAGTCTGATTTACTGAACTTCGTTCTCTAGTTTTCTTTTGAACTCTTAAAGAAAATCTAAAAATTTGTGGTCCTGAGGGCTAGAAAGTATTAGATGAATGATACACATGCTCATATATATATATATATATATATATATATATATATATATATATATATATATATCTATATATATATGAAGTTCTTATACCTAACCTCTGGTTCTTAGTTGTGCCAGTCTATTGGAGTGATCATTTAGTTGGTCGTGCACGTATTTATGAATGGTTGGGGAAATAAACTCAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGTGTTTCTGTGTCAACTTTTTACTCATAATTGATCCTCTGTTTTCTGATTATGCACCCTTAGTCCTGTAGGTTTCATTTTTGCTGAAAATTTTCAGTTTGACTCAGTCTGCGAGTTCATTTTGAAAATTGCAGGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCACAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGCAAGTAATTTAGATCATCCTTTTAAACTCATTGATTTGTAGTTCTATCTCTTCCATGCTTATTGAGCTTGGGACGTGTGTCAAAATGAATTTGATTTGAGACAGGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAAGTATTACCTAAAGATCACATGCTTAATTATTACTGGGAGTTTCTCCACAGCATAAAACACCTGCTCTGATCTTATCTGAGACGACTGTAGATGGTTCGGCACGAGAGAAGCTGTAAATTTCCCGGTCTACTTAACATATATTTTTTGGTACGTTACTCTTTTGACATAATTTTGTTTTGTTTTGTTAATGTTGTTGTTGTTGTTGGAAGTCGGTGAGACCCTTATATCAACACATACTAGAAAGGGGAGAAATGGAAGCTCTCCTCCAATAGCTAATTAGGCTATAGCTTGTACTGTTGGGGGGGCTGAATGAAGTAGCGTGAGGGTCATGGTATGTTTTGAAAGGTCTGGGTAGCTTACTAGATGACTTGAGACTGTTTGTAGGGTAATTATGTTACTCCATGGGCTGTGCCTTCGCTTTTGAGGAACTAGTGCCAGCGAAGAATGAATCTGAGTTCGGATGGACTCCGACCTATCTTGCTTAATGTAAATATAAATATATTTTTAAAGAGATTTTCTGAAGTTCACTTCCAAGTTCCATATAAGAGGAGAAACTTTGTAAAGTACAATATGCATCTAAAGTTTCGATGAGTTTTATGAAATTCCAATGGGTTTAATGTGTCTAGCATTCGTTTGTTTTTGGACTAATTTATTTTATGTAATTTGAGGTATTTT

mRNA sequence

ATGACTGCAACTACAATCATGAACCCTAATCCCTCTCCTCCCTCCTCATCATTCCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTCACCCAAAAGAGGAGCAGTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAAGCAAATCATCAGAAGACAGCCGCATGGCACGAGATTCCGATTTTGTGTATTGAGGATCTTCAGGATGATCCGAAGCGTGAGATTTCCACATTAACCATAGAGGATGTCCAAGAAGTTTCACCCAAAACCCCAACTTCTGAAAGGGAAAGGGTTTCAGCGCATGAGCCTCCTATATTAACTCTAGAGGATCTTCAAAATGCAAAATCGGACCATCAACCGGCGATGAAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACTCCACCTCCTGTCCGAAATTCCATGCCAGTTCAACTTGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAACCCAGCAAGGAGAACGAATTGTATCACGCTACTTTCAACACTCGGAGATAGAACAAGCATCCCATAATGAGGATGAGGATGTCAATGCCACAGATCAACCAATTAAAAGATCAGGGGTCGGAGAATACAGAAAAAGGAGGAGGAAAGACGTAGCTCCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATTAGAAAATCCTCACGTTCTGTTAAAAAATCGGGAACGGATAAACGAGTGCGGATTGTTTCGCGCTATTTCCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTTCATTACAAAATTCAAAAACAAATCAACAAGGAGAGCGGGTAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAGCAAGAGGTTACACAGCAGCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGCCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCACAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGCAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAAGTATTACCTAAAGATCACATGCTTAATTATTACTGGGAGTTTCTCCACAGCATAAAACACCTGCTCTGATCTTATCTGAGACGACTGTAGATGGTTCGGCACGAGAGAAGCTGTAAATTTCCCGGTCTACTTAACATATATTTTTTGGTACGTTACTCTTTTGACATAATTTTGTTTTGTTTTGTTAATGTTGTTGTTGTTGTTGGAAGTCGGTGAGACCCTTATATCAACACATACTAGAAAGGGGAGAAATGGAAGCTCTCCTCCAATAGCTAATTAGGCTATAGCTTGTACTGTTGGGGGGGCTGAATGAAGTAGCGTGAGGGTCATGGTATGTTTTGAAAGGTCTGGGTAGCTTACTAGATGACTTGAGACTGTTTGTAGGGTAATTATGTTACTCCATGGGCTGTGCCTTCGCTTTTGAGGAACTAGTGCCAGCGAAGAATGAATCTGAGTTCGGATGGACTCCGACCTATCTTGCTTAATGTAAATATAAATATATTTTTAAAGAGATTTTCTGAAGTTCACTTCCAAGTTCCATATAAGAGGAGAAACTTTGTAAAGTACAATATGCATCTAAAGTTTCGATGAGTTTTATGAAATTCCAATGGGTTTAATGTGTCTAGCATTCGTTTGTTTTTGGACTAATTTATTTTATGTAATTTGAGGTATTTT

Coding sequence (CDS)

ATGACTGCAACTACAATCATGAACCCTAATCCCTCTCCTCCCTCCTCATCATTCCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTCACCCAAAAGAGGAGCAGTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAAGCAAATCATCAGAAGACAGCCGCATGGCACGAGATTCCGATTTTGTGTATTGAGGATCTTCAGGATGATCCGAAGCGTGAGATTTCCACATTAACCATAGAGGATGTCCAAGAAGTTTCACCCAAAACCCCAACTTCTGAAAGGGAAAGGGTTTCAGCGCATGAGCCTCCTATATTAACTCTAGAGGATCTTCAAAATGCAAAATCGGACCATCAACCGGCGATGAAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACTCCACCTCCTGTCCGAAATTCCATGCCAGTTCAACTTGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAACCCAGCAAGGAGAACGAATTGTATCACGCTACTTTCAACACTCGGAGATAGAACAAGCATCCCATAATGAGGATGAGGATGTCAATGCCACAGATCAACCAATTAAAAGATCAGGGGTCGGAGAATACAGAAAAAGGAGGAGGAAAGACGTAGCTCCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATTAGAAAATCCTCACGTTCTGTTAAAAAATCGGGAACGGATAAACGAGTGCGGATTGTTTCGCGCTATTTCCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTTCATTACAAAATTCAAAAACAAATCAACAAGGAGAGCGGGTAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAGCAAGAGGTTACACAGCAGCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGCCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCACAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGCAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAAGTATTACCTAAAGATCACATGCTTAATTATTACTGGGAGTTTCTCCACAGCATAAAACACCTGCTCTGA

Protein sequence

MTATTIMNPNPSPPSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQKRSSLMAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQEVSPKTPTSERERVSAHEPPILTLEDLQNAKSDHQPAMKPPLARRVLRFYRQFGFDEQIVQKTPPPVRNSMPVQLDERVVSRHFQESKSTQQGERIVSRYFQHSEIEQASHNEDEDVNATDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQNSEKNPEVEIEVSPSLQNSKTNQQGERVVSRFFQKSEEQEVVNNQQEVTQQPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL
Homology
[Close]
BLAST of Carg17008 vs. NCBI nr
Match: XP_022931728.1 (methyl-CpG-binding domain protein 4-like protein [Cucurbita moschata])

HSP 1 Score: 824.7 bits (2129), Expect = 1.8e-235
Identity = 470/542 (86.72%), Postives = 480/542 (88.56%), Query Frame = 0 

Query: 1   MTATTIMNPNPSPP-SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ 60
           MTATTIMNPN SPP SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ
Sbjct: 1   MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ 60

Query: 61  KRSSLMAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQE 120
           KR++LMAQNSPISTLEVLQTSE+NHQKTAA  EIPILCIEDLQD+PKR  STLT+EDVQE
Sbjct: 61  KRTTLMAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQE 120

Query: 121 VSPKTPTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIVQ 180
           VSPKTPTSE                   AKSDHQPA++PPLARRVLRFYRQFGFDEQIVQ
Sbjct: 121 VSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQ 180

Query: 181 KTPPPVRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNE----DEDV 240
           KTPP VRNSMPVQ DERVVSRHFQEXXXXXXXXXXXXXXXXXXXX  A+HNE        
Sbjct: 181 KTPPSVRNSMPVQRDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXERAAHNEXXXXXXXX 240

Query: 241 NATDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYF 300
             TDQPIKRS VG+YRKRRRKDVA SSDNSKAYQRSIRKSSR VK+SGTDKRVR VSRYF
Sbjct: 241 XXTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYF 300

Query: 301 QNSEKNPEVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSV 360
           QNSEKNPEVEIEVSP LQNSKT     XXXXXXXXXXXXX            PSQCAKSV
Sbjct: 301 QNSEKNPEVEIEVSPPLQNSKTKQQGEXXXXXXXXXXXXXEVVNNQQEVIQLPSQCAKSV 360

Query: 361 KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYD 420
           KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKS DDTWKPPPSGIRLLQQDHAYD
Sbjct: 361 KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYD 420

Query: 421 PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT 480
           PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT
Sbjct: 421 PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT 480

Query: 481 IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH 538
           IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH
Sbjct: 481 IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH 540

[Close]
BLAST of Carg17008 vs. NCBI nr
Match: XP_023529473.1 (methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 795.0 bits (2052), Expect = 1.5e-226
Identity = 486/540 (90.00%), Postives = 497/540 (92.04%), Query Frame = 0 

Query: 1   MTATTIMNPNPSPP-SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ 60
           M+ATTIMNPN SPP SSSFPDF           SSRFRFPPSKCPS+SN QNPTPEDFTQ
Sbjct: 1   MSATTIMNPNLSPPSSSSFPDFSVQ-------CSSRFRFPPSKCPSDSNPQNPTPEDFTQ 60

Query: 61  KRSSLMAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQE 120
           KR++LMAQNSPISTLEVLQTSE+NHQKTA  HEIPILCIEDLQD+PKR  STLT+EDVQ+
Sbjct: 61  KRTTLMAQNSPISTLEVLQTSESNHQKTAVGHEIPILCIEDLQDNPKRGTSTLTVEDVQQ 120

Query: 121 VSPKTPTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIVQ 180
           VSPKTP   XXXXXXXXXXXXXXXXXXXAKSDHQPA+KPPLARRVLRFYRQFGFDEQIVQ
Sbjct: 121 VSPKTPXXXXXXXXXXXXXXXXXXXXXXAKSDHQPAIKPPLARRVLRFYRQFGFDEQIVQ 180

Query: 181 KTPPPVRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHN--EDEDVNA 240
           KTPP VRNSMPVQ DERVVSRHFQ XXXXXXXXXXXXXXXXXXXXXXA+HN  EDEDVN 
Sbjct: 181 KTPPSVRNSMPVQRDERVVSRHFQXXXXXXXXXXXXXXXXXXXXXXXAAHNEDEDEDVNV 240

Query: 241 TDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQN 300
           TDQPIKRS VGEYRKRRRKDVA SSDNSKAYQRSIRKSSRSVKKSG DKRVRIVSRYFQN
Sbjct: 241 TDQPIKRSRVGEYRKRRRKDVASSSDNSKAYQRSIRKSSRSVKKSGKDKRVRIVSRYFQN 300

Query: 301 SEKNPEVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSVKR 360
           SEKNPEVEIEVSPSLQNS   XXXXXXXXXXXXXXXXXXXX         PSQCAKSVKR
Sbjct: 301 SEKNPEVEIEVSPSLQNSXXXXXXXXXXXXXXXXXXXXXXXNNQQEVIQLPSQCAKSVKR 360

Query: 361 IRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPW 420
           IRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKS DDTWKPPPSGIRLLQQDHAYDPW
Sbjct: 361 IRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPW 420

Query: 421 RVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQ 480
           RVLVICMLLNRTTGQQAK+VIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQ
Sbjct: 421 RVLVICMLLNRTTGQQAKDVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQ 480

Query: 481 RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 538
           RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL
Sbjct: 481 RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 533

[Close]
BLAST of Carg17008 vs. NCBI nr
Match: XP_022969557.1 (methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 729.6 bits (1882), Expect = 7.9e-207
Identity = 426/475 (89.68%), Postives = 432/475 (90.95%), Query Frame = 0 

Query: 65  MAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQEVSPKT 124
           MA NSPISTLEVLQTSEANHQKTAA HEIPILCIE LQDDPKREISTLT+EDVQEVSPKT
Sbjct: 1   MALNSPISTLEVLQTSEANHQKTAAGHEIPILCIEYLQDDPKREISTLTVEDVQEVSPKT 60

Query: 125 PTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIVQKTPPP 184
           PTSE                   AKSDHQPA+KPPLARRVLRF RQFGFDEQIVQKTPP 
Sbjct: 61  PTSERERVLAHEPPILTLEDLQNAKSDHQPAIKPPLARRVLRFCRQFGFDEQIVQKTPPS 120

Query: 185 VRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNEDE--DVNATDQPI 244
           VRNSMPVQ DERVVSRHFQEXXXXXXXXXXXXXXXXXXXXX A+HNEDE  DVN TDQP 
Sbjct: 121 VRNSMPVQRDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXRAAHNEDEDDDVNVTDQPF 180

Query: 245 KRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQNSEKNP 304
           KRS VG+YRKRRRKDVA SSDNSKAYQRSIRKSSRS+KKSGTDKRVRIVSRYFQNSEKNP
Sbjct: 181 KRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRSIKKSGTDKRVRIVSRYFQNSEKNP 240

Query: 305 EVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSVKRIRKPA 364
           EVEIEVSPSLQNSKT XXXXXXXXXXXXXXXXXXXX         PSQCAKSVKRIRKPA
Sbjct: 241 EVEIEVSPSLQNSKTXXXXXXXXXXXXXXXXXXXXXNNQQEVIQLPSQCAKSVKRIRKPA 300

Query: 365 KERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVI 424
           KERKVRDKVSA+PRTTLSADELFLEAYRRKS DDTWKPPPSGIRLLQQDHAYDPWRVLVI
Sbjct: 301 KERKVRDKVSAKPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVI 360

Query: 425 CMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEM 484
           CMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEM
Sbjct: 361 CMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEM 420

Query: 485 YLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 538
           YLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL
Sbjct: 421 YLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 475

[Close]
BLAST of Carg17008 vs. NCBI nr
Match: XP_022969561.1 (methyl-CpG-binding domain protein 4-like protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 514.2 bits (1323), Expect = 5.2e-142
Identity = 322/371 (86.79%), Postives = 328/371 (88.41%), Query Frame = 0 

Query: 65  MAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQEVSPKT 124
           MA NSPISTLEVLQTSEANHQKTAA HEIPILCIE LQDDPKREISTLT+EDVQEVSPKT
Sbjct: 1   MALNSPISTLEVLQTSEANHQKTAAGHEIPILCIEYLQDDPKREISTLTVEDVQEVSPKT 60

Query: 125 PTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIVQKTPPP 184
           PTSE                   AKSDHQPA+KPPLARRVLRF RQFGFDEQIVQKTPP 
Sbjct: 61  PTSERERVLAHEPPILTLEDLQNAKSDHQPAIKPPLARRVLRFCRQFGFDEQIVQKTPPS 120

Query: 185 VRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNEDE--DVNATDQPI 244
           VRNSMPVQ DERVVSRHFQEXXXXXXXXXXXXXXXXXXXXX A+HNEDE  DVN TDQP 
Sbjct: 121 VRNSMPVQRDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXRAAHNEDEDDDVNVTDQPF 180

Query: 245 KRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQNSEKNP 304
           KRS VG+YRKRRRKDVA SSDNSKAYQRSIRKSSRS+KKSGTDKRVRIVSRYFQNSEKNP
Sbjct: 181 KRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRSIKKSGTDKRVRIVSRYFQNSEKNP 240

Query: 305 EVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSVKRIRKPA 364
           EVEIEVSPSLQNSKT XXXXXXXXXXXXXXXXXXXX         PSQCAKSVKRIRKPA
Sbjct: 241 EVEIEVSPSLQNSKTXXXXXXXXXXXXXXXXXXXXXNNQQEVIQLPSQCAKSVKRIRKPA 300

Query: 365 KERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVI 424
           KERKVRDKVSA+PRTTLSADELFLEAYRRKS DDTWKPPPSGIRLLQQDHAYDPWRVLVI
Sbjct: 301 KERKVRDKVSAKPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVI 360

Query: 425 CMLLNRTTGQQ 434
           CMLLNRTTGQQ
Sbjct: 361 CMLLNRTTGQQ 371

[Close]
BLAST of Carg17008 vs. NCBI nr
Match: XP_008460559.1 (PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo])

HSP 1 Score: 505.0 bits (1299), Expect = 3.2e-139
Identity = 324/542 (59.78%), Postives = 366/542 (67.53%), Query Frame = 0 

Query: 1   MTATTIMNPNPSPP-SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTP-EDFT 60
           M ATT +NPN +PP SSS+P  LFS+F F+G S SRFRFPPSK    S  QNP P +D T
Sbjct: 1   MAATTSINPNLTPPSSSSYPHDLFSEFVFRGTSRSRFRFPPSK----SAHQNPNPYQDST 60

Query: 61  QKRSSLMAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQ 120
                   Q+SPISTL  LQTSE N+      H   +       D+P      LT+ED+Q
Sbjct: 61  --------QHSPISTLYDLQTSEPNNH-----HNKSLASPSSEADEP----PILTLEDLQ 120

Query: 121 EVSPKTPTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIV 180
                                         K   Q   KP LARRVL FYR+FGFD++++
Sbjct: 121 N----------------------------GKLPLQSPKKPSLARRVLSFYREFGFDKKLL 180

Query: 181 QKTPPPVRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNEDE--DVN 240
           Q T   V NS PVQ   RVV      XXXXXXXXXXXXXXXXXXX   A+H EDE  D N
Sbjct: 181 QATSHSVLNSEPVQEGTRVVXXXXXXXXXXXXXXXXXXXXXXXXXKERAAHYEDENDDGN 240

Query: 241 ATDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQ 300
            T+QP KRS      KRRRKDV PSS NSK    S+ K+SRSV+KS TD R RIVS YFQ
Sbjct: 241 LTEQPSKRSS-----KRRRKDVDPSSVNSKTNHHSMGKTSRSVQKSRTDTRARIVSGYFQ 300

Query: 301 NSEKNPEVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSVK 360
            SEK+ E++ EVSPSLQNSK+N                              +QCAKSVK
Sbjct: 301 YSEKSLEMDREVSPSLQNSKSNQQEEKMVSRFFLKSGKQQAVNNQEEATEQLNQCAKSVK 360

Query: 361 RIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYD 420
           R+RKP  ERK ++K S+ +PRTTL+A ELFLEAYRRKSPDDTWKPPPSG RLLQ DHAYD
Sbjct: 361 RVRKPVNERKQKNKTSSTKPRTTLTAAELFLEAYRRKSPDDTWKPPPSGTRLLQHDHAYD 420

Query: 421 PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT 480
           PWRVLVICMLLNRT+G+QAKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T
Sbjct: 421 PWRVLVICMLLNRTSGRQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGLYRKRSRT 480

Query: 481 IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH 538
           + RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+EV PKDHMLNYYW+FLHSIKH
Sbjct: 481 MHRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSEVEPKDHMLNYYWDFLHSIKH 488

[Close]
BLAST of Carg17008 vs. TAIR10
Match: AT3G07930.3 (DNA glycosylase superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 4.2e-53
Identity = 100/168 (59.52%), Postives = 122/168 (72.62%), Query Frame = 0 

Query: 363 KERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVI 422
           K R VR      P   LS  +   + Y RK+PD+TW PP S   LLQ+DH +DPWRVLVI
Sbjct: 274 KSRNVRKTPIVSP--VLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVI 333

Query: 423 CMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEM 482
           CMLLN+T+G Q + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRLS  
Sbjct: 334 CMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLE 393

Query: 483 YLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFL 531
           YL+ESW+HVTQL GVGKY ADA+AIFC G W  V P DHMLNYYW++L
Sbjct: 394 YLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439

[Close]
BLAST of Carg17008 vs. Swiss-Prot
Match: sp|Q0IGK1|MBD4L_ARATH (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.6e-52
Identity = 100/168 (59.52%), Postives = 122/168 (72.62%), Query Frame = 0 

Query: 363 KERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVI 422
           K R VR      P   LS  +   + Y RK+PD+TW PP S   LLQ+DH +DPWRVLVI
Sbjct: 274 KSRNVRKTPIVSP--VLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVI 333

Query: 423 CMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEM 482
           CMLLN+T+G Q + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRLS  
Sbjct: 334 CMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLE 393

Query: 483 YLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFL 531
           YL+ESW+HVTQL GVGKY ADA+AIFC G W  V P DHMLNYYW++L
Sbjct: 394 YLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439

[Close]
BLAST of Carg17008 vs. Swiss-Prot
Match: sp|O95243|MBD4_HUMAN (Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.8e-24
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 391 RKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKS 450
           R+     W PP S   L+Q+   +DPW++L+  + LNRT+G+ A  V+ K     P  + 
Sbjct: 431 RRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEV 490

Query: 451 ALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCT 510
           A       + ++++PLGL   R+ TI + S+ YL + W +  +L G+GKYG D++ IFC 
Sbjct: 491 ARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCV 550

Query: 511 GYWTEVLPKDHMLNYYWEFL 531
             W +V P+DH LN Y ++L
Sbjct: 551 NEWKQVHPEDHKLNKYHDWL 570

[Close]
BLAST of Carg17008 vs. Swiss-Prot
Match: sp|Q9Z2D7|MBD4_MOUSE (Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-23
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0 

Query: 390 RRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPK 449
           RRKS    W PP S   L+Q+   +DPW++L+  + LNRT+G+ A  V+ +     P  +
Sbjct: 405 RRKS-FKKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAE 464

Query: 450 SALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFC 509
            A       + ++++PLGL   R+ TI + S+ YL + W +  +L G+GKYG D++ IFC
Sbjct: 465 VARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFC 524

Query: 510 TGYWTEVLPKDHMLNYYWEFL 531
              W +V P+DH LN Y ++L
Sbjct: 525 VNEWKQVHPEDHKLNKYHDWL 544

[Close]
BLAST of Carg17008 vs. Swiss-Prot
Match: sp|Q58030|END3_METJA (Endonuclease III OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=nth PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 4.1e-05
Identity = 28/97 (28.87%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 415 DPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSL 474
           DP++VL+  ++  RT  +  +EV  KLF    D    L + +E++ D+I P G  + ++ 
Sbjct: 25  DPFKVLISTIISARTKDEVTEEVSKKLFKEIKDVDDLLNIDEEKLADLIYPAGFYKNKAK 84

Query: 475 TIQRLSEMYLKESWS--------HVTQLPGVGKYGAD 504
            +++L+++ LKE+++         + +LPGVG+  A+
Sbjct: 85  NLKKLAKI-LKENYNGKVPDSLEELLKLPGVGRKTAN 120

[Close]
BLAST of Carg17008 vs. Swiss-Prot
Match: sp|Q9WYK0|END3_THEMA (Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) OX=243274 GN=nth PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-04
Identity = 26/96 (27.08%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 415 DPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSL 474
           DP+RVL+  +L  RT  +  ++   KLF +   P+   +   E + D+I+  G+ R+++ 
Sbjct: 21  DPFRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQKAE 80

Query: 475 TIQRLSEMYLK-------ESWSHVTQLPGVGKYGAD 504
            I  +S + ++       +S   + +LPGVG+  A+
Sbjct: 81  RIVEISRILVEKYGGRVPDSLEELLKLPGVGRKTAN 116

[Close]
BLAST of Carg17008 vs. TrEMBL
Match: tr|A0A1S3CCU6|A0A1S3CCU6_CUCME (methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC103499353 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.1e-139
Identity = 324/542 (59.78%), Postives = 366/542 (67.53%), Query Frame = 0 

Query: 1   MTATTIMNPNPSPP-SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTP-EDFT 60
           M ATT +NPN +PP SSS+P  LFS+F F+G S SRFRFPPSK    S  QNP P +D T
Sbjct: 1   MAATTSINPNLTPPSSSSYPHDLFSEFVFRGTSRSRFRFPPSK----SAHQNPNPYQDST 60

Query: 61  QKRSSLMAQNSPISTLEVLQTSEANHQKTAAWHEIPILCIEDLQDDPKREISTLTIEDVQ 120
                   Q+SPISTL  LQTSE N+      H   +       D+P      LT+ED+Q
Sbjct: 61  --------QHSPISTLYDLQTSEPNNH-----HNKSLASPSSEADEP----PILTLEDLQ 120

Query: 121 EVSPKTPTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQFGFDEQIV 180
                                         K   Q   KP LARRVL FYR+FGFD++++
Sbjct: 121 N----------------------------GKLPLQSPKKPSLARRVLSFYREFGFDKKLL 180

Query: 181 QKTPPPVRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNEDE--DVN 240
           Q T   V NS PVQ   RVV      XXXXXXXXXXXXXXXXXXX   A+H EDE  D N
Sbjct: 181 QATSHSVLNSEPVQEGTRVVXXXXXXXXXXXXXXXXXXXXXXXXXKERAAHYEDENDDGN 240

Query: 241 ATDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVRIVSRYFQ 300
            T+QP KRS      KRRRKDV PSS NSK    S+ K+SRSV+KS TD R RIVS YFQ
Sbjct: 241 LTEQPSKRSS-----KRRRKDVDPSSVNSKTNHHSMGKTSRSVQKSRTDTRARIVSGYFQ 300

Query: 301 NSEKNPEVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQCAKSVK 360
            SEK+ E++ EVSPSLQNSK+N                              +QCAKSVK
Sbjct: 301 YSEKSLEMDREVSPSLQNSKSNQQEEKMVSRFFLKSGKQQAVNNQEEATEQLNQCAKSVK 360

Query: 361 RIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYD 420
           R+RKP  ERK ++K S+ +PRTTL+A ELFLEAYRRKSPDDTWKPPPSG RLLQ DHAYD
Sbjct: 361 RVRKPVNERKQKNKTSSTKPRTTLTAAELFLEAYRRKSPDDTWKPPPSGTRLLQHDHAYD 420

Query: 421 PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT 480
           PWRVLVICMLLNRT+G+QAKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T
Sbjct: 421 PWRVLVICMLLNRTSGRQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGLYRKRSRT 480

Query: 481 IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH 538
           + RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+EV PKDHMLNYYW+FLHSIKH
Sbjct: 481 MHRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSEVEPKDHMLNYYWDFLHSIKH 488

[Close]
BLAST of Carg17008 vs. TrEMBL
Match: tr|A0A0A0KRW9|A0A0A0KRW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630730 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.5e-113
Identity = 285/521 (54.70%), Postives = 335/521 (64.30%), Query Frame = 0 

Query: 1   MTATTIMNPNPSPP-SSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTP-EDFT 60
           M +TT ++PN +PP SSS+P  LFS+F F+G S SRFRFPPSK    S +Q+P P +D T
Sbjct: 1   MASTTSIHPNLTPPSSSSYPHDLFSEFVFRGTSRSRFRFPPSK----SAQQDPNPYQDST 60

Query: 61  QKRSSLMAQNSPISTLEVLQTSE-ANHQK------TAAWHEIPILCIEDLQDDPKREIST 120
                   Q+SP+STL  LQT E +NH        ++  HE PIL +EDLQ+        
Sbjct: 61  --------QHSPLSTLHDLQTPEPSNHHNESLASPSSEVHEPPILTLEDLQN-------- 120

Query: 121 LTIEDVQEVSPKTPTSEXXXXXXXXXXXXXXXXXXXAKSDHQPAMKPPLARRVLRFYRQF 180
                                                K   Q   +P LARRVL FYR+F
Sbjct: 121 ------------------------------------GKLPRQSPKQPSLARRVLSFYREF 180

Query: 181 GFDEQIVQKTPPPVRNSMPVQLDERVVSRHFQEXXXXXXXXXXXXXXXXXXXXXXASHNE 240
           GFD++++Q T   V NS+P Q   RVV      XXXXXXXXXXXXXXXXXXX    +H E
Sbjct: 181 GFDKKLLQATSHSVLNSVPAQEGTRVVXXXXXXXXXXXXXXXXXXXXXXXXXKERTAHYE 240

Query: 241 DED--VNATDQPIKRSGVGEYRKRRRKDVAPSSDNSKAYQRSIRKSSRSVKKSGTDKRVR 300
           DE+   N T+QP KRS      KRRRKDV P SDNSK    S+ K++RSV+KSGTD +VR
Sbjct: 241 DENDGGNLTEQPSKRSS-----KRRRKDVTPGSDNSKTNHHSVGKTARSVQKSGTDTQVR 300

Query: 301 IVSRYFQNSEKNPEVEIEVSPSLQNSKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPS 360
           IVS YFQ+ EK+ E++ EVSPSLQNSK+N XX                           +
Sbjct: 301 IVSGYFQSYEKSLEMDREVSPSLQNSKSNQXXEKVVSRFFLKSGKQQAVNNQEEATEQLN 360

Query: 361 QCAKSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLL 420
           QCAKSVKR+RKP  ERK +DK S+ +PRTTL+A ELFLEAYRRKSP DTWKPP SG RLL
Sbjct: 361 QCAKSVKRLRKPVNERKEKDKTSSTKPRTTLTAAELFLEAYRRKSPYDTWKPPTSGTRLL 420

Query: 421 QQDHAYDPWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGL 480
           Q DHAYDPWRVLVICMLLNRT+GQQAKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG 
Sbjct: 421 QHDHAYDPWRVLVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGF 460

Query: 481 QRKRSLTIQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFC 510
            RKRS T+ RLSEMYLKESWSHVTQLPGVGKY A    + C
Sbjct: 481 YRKRSRTMHRLSEMYLKESWSHVTQLPGVGKYLAYPCTLSC 460

[Close]
BLAST of Carg17008 vs. TrEMBL
Match: tr|B9RKX6|B9RKX6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1564050 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 5.9e-57
Identity = 115/178 (64.61%), Postives = 133/178 (74.72%), Query Frame = 0 

Query: 356 KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYD 415
           K  +K   E+K R    AR   TLSA E   EAYRRK+PD+TWKPP S   LLQ+DHA D
Sbjct: 430 KHGQKKLPEKKKR---PARKSITLSAAEKRSEAYRRKTPDNTWKPPRSDFGLLQEDHASD 489

Query: 416 PWRVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLT 475
           PWRVLVICMLLN TTG+Q + VI   FTLCPD K+A E   E+IE II PLGLQ+KR++ 
Sbjct: 490 PWRVLVICMLLNCTTGKQVRGVISDFFTLCPDAKAATEAKTEEIEKIIVPLGLQKKRAVM 549

Query: 476 IQRLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSI 534
           IQRLS+ YL + W+HVTQL GVGKY ADA+AIFCTG W +V PKDHMLNYYW+FLH I
Sbjct: 550 IQRLSQEYLADDWTHVTQLHGVGKYAADAYAIFCTGKWDQVRPKDHMLNYYWDFLHKI 604

[Close]
BLAST of Carg17008 vs. TrEMBL
Match: tr|A0A151SQL7|A0A151SQL7_CAJCA (Methyl-CpG-binding domain protein 4 OS=Cajanus cajan OX=3821 GN=KK1_003378 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 103/157 (65.61%), Postives = 126/157 (80.25%), Query Frame = 0 

Query: 379 LSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQAKEVI 438
           LSA E++ EAY+R++PD+TWKPP S   L+Q+DH +DPWRVLVICMLLNRTTG+QAK+++
Sbjct: 189 LSALEIWDEAYKRRTPDNTWKPPRSATGLIQEDHIHDPWRVLVICMLLNRTTGRQAKKIV 248

Query: 439 PKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRLSEMYLKESWSHVTQLPGVG 498
             LF LCPD KS  +V++E+IE  I+ LGLQ KR+  +QR SE YL ESW+HVTQL GVG
Sbjct: 249 SDLFKLCPDAKSCTQVAREEIEKTIQSLGLQHKRAAMLQRFSEEYLDESWTHVTQLHGVG 308

Query: 499 KYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKH 536
           KY ADA+AIF TG W  V P DHMLNYYWEFLH IK+
Sbjct: 309 KYAADAYAIFITGMWDRVKPTDHMLNYYWEFLHRIKY 345

[Close]
BLAST of Carg17008 vs. TrEMBL
Match: tr|A0A2P5E1U4|A0A2P5E1U4_PARAD (DNA-3-methyladenine glycosylase I OS=Parasponia andersonii OX=3476 GN=PanWU01x14_012360 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 5.5e-55
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 0 

Query: 358 IRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSPDDTWKPPPSGIRLLQQDHAYDPW 417
           + K  K +K R +        LSA +   EAY RKS D+TWKPP S + LLQ+DH +DPW
Sbjct: 224 VLKQGKRKKWRGR-CVGVNIQLSASQKLDEAYERKSCDNTWKPPRSQLGLLQEDHLHDPW 283

Query: 418 RVLVICMLLNRTTGQQAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQ 477
           RVL+ICMLLNRTTG QA+++I +LFTLCP+ K+A EV+ E+IE II+PLGLQRKR++ IQ
Sbjct: 284 RVLLICMLLNRTTGLQAQKIISELFTLCPNAKAATEVASEEIEKIIQPLGLQRKRAVMIQ 343

Query: 478 RLSEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEVLPKDHMLNYYWEFLHSIKHLL 537
           R S+ YL+ESW+HVTQL G+GKY ADA+AIFCTG W  V P DHMLNYYW FL SI+  L
Sbjct: 344 RFSQEYLEESWTHVTQLHGIGKYAADAYAIFCTGKWDRVKPTDHMLNYYWGFLCSIRDTL 402

The following BLAST results are available for this feature:
BLAST of Carg17008 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931728.11.8e-23586.72methyl-CpG-binding domain protein 4-like protein [Cucurbita moschata][more]
XP_023529473.11.5e-22690.00methyl-CpG-binding domain protein 4-like protein [Cucurbita pepo subsp. pepo][more]
XP_022969557.17.9e-20789.68methyl-CpG-binding domain protein 4-like protein isoform X1 [Cucurbita maxima][more]
XP_022969561.15.2e-14286.79methyl-CpG-binding domain protein 4-like protein isoform X2 [Cucurbita maxima][more]
XP_008460559.13.2e-13959.78PREDICTED: methyl-CpG-binding domain protein 4-like protein [Cucumis melo][more]
BLAST of Carg17008 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07930.34.2e-5359.52DNA glycosylase superfamily protein[more]
BLAST of Carg17008 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0IGK1|MBD4L_ARATH7.6e-5259.52Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702... [more]
sp|O95243|MBD4_HUMAN8.8e-2436.43Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1[more]
sp|Q9Z2D7|MBD4_MOUSE5.7e-2337.59Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1[more]
sp|Q58030|END3_METJA4.1e-0528.87Endonuclease III OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 ... [more]
sp|Q9WYK0|END3_THEMA4.5e-0427.08Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / J... [more]
BLAST of Carg17008 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCU6|A0A1S3CCU6_CUCME2.1e-13959.78methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0KRW9|A0A0A0KRW9_CUCSA1.5e-11354.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630730 PE=4 SV=1[more]
tr|B9RKX6|B9RKX6_RICCO5.9e-5764.61Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1564050 PE=4 SV=1[more]
tr|A0A151SQL7|A0A151SQL7_CAJCA1.9e-5565.61Methyl-CpG-binding domain protein 4 OS=Cajanus cajan OX=3821 GN=KK1_003378 PE=4 ... [more]
tr|A0A2P5E1U4|A0A2P5E1U4_PARAD5.5e-5561.11DNA-3-methyladenine glycosylase I OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: INTERPRO
TermDefinition
IPR011257DNA_glycosylase
IPR003265HhH-GPD_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006281 DNA repair
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17008-RACarg17008-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003265HhH-GPD domainPFAMPF00730HhH-GPDcoord: 423..498
e-value: 4.9E-6
score: 26.8
NoneNo IPR availableGENE3DG3DSA:1.10.340.30coord: 387..536
e-value: 1.1E-45
score: 156.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..261
NoneNo IPR availablePANTHERPTHR150745-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA GLYCOSYLASEcoord: 187..536
NoneNo IPR availablePANTHERPTHR15074:SF0METHYL-CPG-BINDING DOMAIN PROTEIN 4-LIKE PROTEINcoord: 187..536
IPR011257DNA glycosylaseSUPERFAMILYSSF48150DNA-glycosylasecoord: 403..531

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17008CmaCh11G011780Cucurbita maxima (Rimu)carcmaB0651
Carg17008CmoCh11G012620Cucurbita moschata (Rifu)carcmoB0632
Carg17008Cp4.1LG04g00110Cucurbita pepo (Zucchini)carcpeB0657
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17008Wild cucumber (PI 183967)carcpiB0504
Carg17008Cucumber (Chinese Long) v3carcucB0501
Carg17008Melon (DHL92) v3.5.1carmeB0473
Carg17008Melon (DHL92) v3.6.1carmedB0477