CmoCh11G012090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein
Location	Cmo_Chr11 : 7149129 .. 7165735 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGAGAAGAAGCAGTATAAATAGGAGTGAAGTGATGGCGGTGAGCCGAGAAATCTTCTCCCTCAGACCTCAACTCAGTTGCCTTTCTTTTCTTTTTTCTTTTCTTGCCTTTTCCTTTTATTTTTATTTTTTTTATTTTTATTTTTATTTTATTTTTATTTTTTTTACTTTCTTCTTCGTCTTCGTTGTCGGAGGCAGACGACACTCTCTGTTCCTCACGGTCTCGATCTCCATATACCCATTTCCATGGCTCACCATTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTCCTTCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCTCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCATCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTCTCCCAGAAGCTTTTGAATCAGGTTGCTTTTTCTTTTTACTAGATCCTCTATGTTTATGCGCTTCACTTCGTGTCAAGATTTTGATATCTGCTTGTTCAATATTTACGTTGGTATGGAGCTGAATTTCATATCCTTCTGTCAAATCTCTATGGGATAGTTGCTTGGGTTAATTTTATGAAGCACCGTAACTGTTTTGAGCCTGCGAATTATTTTGCTTCTCTAGGCACATATTATGTTCGCTAGAAGTCAGGGTTACTTGAAAAGGGGTTAGAGCTCCCTGCCAATTCCGTTCTGTACTCTCTTTTCCTTCTGCACTAATATTGTTGATATCAGCAAGGTTTCTTTTTTCAAAGGGAGCTGTAGGTAAAAAGATCCAAAGGTAGCTTGCGACCTAGAAAAGGGCTTTTCTCAAAGGGAGGGAAGCTGAATCTTTTAGTGTGTACTTTGTGAGATTCCTTCTTACTTCATGTCAGTGTTTAGGATTCTTGTTTTTGTGTAAGAACTTTGAGACGATTATGAAGGACTTTTTGTGGGAAAGGGTTGATGGGGAGGAGGTCCTCATTTGATTAGGTGGAATAATTTTTCAAAGTAGATCAATTAGGGGGGTTGGGAATCCGGTTTGAGACTTCATAATTTGGCATTGTTGGCTAAATGGTTATGACATTTCCCATTGGAATTGAATTCTTTGTGGCATATGGTCATTGTGAGCAAACGACCTCCATCCATCCATCCAAATGGGTCTAATGGCACGGTAAAAAATCCTTGTTTTTTGATTGCTTCAAGTCCTTTTCCATAGTTATGTGACTCGCGTGTTGGAGATGACTTGAGCTCCTATTTTTGGGAGTATTTTTGGGTGGGTCATAGACCCTTGTGTTTGGAGTTCTTTGCTTTTATCATTTATCTACTTCGAGGATGTGCCAGGCTCTTCCATTATTTCTTCTTTTGGTCCTTGTCTTTTGTTCAAAATTGGATTTGATAATCCCTTGTTCGATAGGGAGTCTTTGTTGTTGCTGCTCTTATTGAATTTTTGTAGTATCATTCTCCATATGGGAACTAAAATTCTTTGTCCATCTAAAGGTTCTCTTGTGGTTTCTTTTTTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCGTCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTGATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCCTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGATTTGAGCTATTTCTTGTACTTATTAGCCTTTTGTGTAGCTTTAGTGCTTTTCCCTCCCTGCTTTTTGTTATGGAATGAAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTCATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGAATTTGAGCTATTTCTTGTACTGGTGCAAGTTTCTTGCTTATTTTTGGGGTGTGTTTTCCCCATAACTGGGACTGTTGTCTTATGAAGGAGGAGATCCCACTTCACTCCCCATTTAGGGAGACGAGTTGGAGGGCCACTTTTTTTGCGGTCATTCGGGGTATTTGGTTGGAGAGGAATAATAAGATTTTTAGAGGGTGGAGAGGTCTCTGGAGGAATTTTGGTCCTTGGCTAGGTTTAATGTCTCGCGTAGGGTGTTTGTATCCAAGGGATTTATCTTGTTGGATTGGAGTTTGGTTTGGCTCCTTTTGAAGCTGTCTTTTTGTATACCTTTGGCTGGTTTGCTGGTCTCCTATGTATTCTTTCAATCAAGGTTTCAGTTTTTTGATAAAACAAGAAACAGCATGTATTTGGGCTCGCTTTCATAATCTATTTCTACAAAGAAAACTAAAAAAATGCTATTTTCTCTTGTGAGTCTATAAATTTGGACACCATGTATTTGTGCAACCTTTCAAAGAGTGTTTAAACAAGAAACAGCATGTATTTGGGCTCGCTTTCATAATCTATTTCTACAAAGAAAACTAAAAAAATGCTATTTTCTCTTGTGAGTCTATAAATTTGGACACCATGTATTTGTGCAACCTTTCAAAGAGTGTTTAGGCCAACTTTCATTGCCGGTTCTGCAAACTTCTTCCCTCTTTTTGCAAAGGGGCAGACACTAGGTAGAGCAAAGATATTATCCAAATATCCTAGTATGAACAATCATTGAAGTTAGCCTCCAGAAACTATTCTTCTGCTGATCACTTCTCTCTGTCTCCCACCCTTCTGACTTATCCATAACAGCTTCAACATCTAAGATAAGATTTTCTTTTGGTTCCTTCATATTTTGTCATTTTTGTTTTTTAAGGAGATTTTGTCATGGAGTTAAGTAATTGTTGCGTGGGCAAGACATTTTCTCTACCCTTCTTCTGAATAAATTGTTTTCATAATTGACGATAAGTTTGGTAGTGACTCTTTTTGGGGAGTGTGGTTAGAAAAAGATATGTGACTTTAAAGGATAATGGGGTTGAAAGCTAATTCTTTTGGGAGATTTGGTCAGAGAGGAAGCAAAGTTTATTGAGAGGAAACTTTTTGACACTTGCTTATCAAATCTTGCTCTAGAACTTGGTTTAATGTTACAGCTCAAATAATCTCATATCATGACACATCTTGCAGTAGTAGTTCTATAGATGGTCTGGTATAACCCTTGTGCTATTGTATTTTTTTTAAAGTACATTTTTCTGATAAATTTTCTATCACCTATGAAGTACAATCACTCTATTAAACCCACACAAACCCAAACCTTCACCCCATACACTGCCTTATAGGTTAGTAAATTTTACCTTTTAATCCCCTAAACAGCCAGAGTATCTAGAATCCAAGGATTGTTGGTGTAGAACTTCATTATGCTGATGTTTGGAAGGGTGAAAACTGTGATTATCTTTTGCTTATAGAAGGGACAGCAGAACATGAAGATCTTGAAGCTTGGATATCGACCTCTGGTTTTTGAGAGTATGGTTAACATAATAACCACCACAACACCTTGGATCTTGCATCTGCTGAAGGAAACCATGTAGAAAACTGGAGAATAACTTTCCGAAGAAGAATATCCGTAAAACTAACTTTTTGGGCAAATTGCATGAAAAGCAATGTCATATTCTTTGTTCCTTGTCAAAAAAAGGAAAGGAAAAAAATGACTCTTTAAAGCTGTCAAATGGATATTCTACATATATCATATAAAACTCAGAAGAGACAATTGAGGTAGGTATCTGATAAAGTCTCTTGTGTTCCTATGACCCTACATTAAGTTAAAAAAAGAAAAAGAAAAAAGAAAAAAAGTGGGAGAGGGCCGAACAATGGATAAAAGTATTTGGTTATCCTTGTTTTAAAGTTGATATAGTGGTTAGCTGTCCTTTCTGACTCAACGTTAGTAAGTTGGATCATTCCTTATGGCCTTTGGTGCTCACTATTACCACCCAACAAGGATCAATTTGATGACTTTGAAATCATAAATTTGAATCTTTATGACTATTAGTCTAGGATATCACTTTTCTGCAAGTATCCTTTGAAAATAAAAAGGTACATAAGTTCGCCAGGACTCTTATCGTGGGTATCAATTAAAAAGTTGAACAGTTAATTTAGTAGGTTGGGTACTTTTACTGTGTTTTAAATTCCAATATTAATTAGATATTGTTTTCTATGCCTACCTTCTTTTTATCATTCACTTTATTAAATTATTTGCGAATTATGGTTTTTAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGGTAAGATTCTCTCTTGGCATTTTTATTTGGATTTCACATTCTGTTAACGTGTGGAGATCCTGCTCTTACCATCCTGCCATTGGTGGATTGCTTTGGTAAAATTCAATACTTGATGATGATGATTTAGAATTAGTCATCTGGCCTCCCTTCTCTCTTTCTCTCTCTAAAATACTTTACCTGAGTAAGGTCCATTTTAATTCAGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTGTGAGTATTTAATTTATTTTAACATCCTTCTTTACCTCTGTTGCCCTGAAGTTATCCTCAATTCTCTTTCTTGTTTTGTTCCCCAAATTTCTCTTTCTTGTTTTGTTCCCCTCATGCTTTTTGGTTCAATATTCTGCAGATGGTTAATGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTATTTATTTAATTTAATGATTACATAAATTATATAAAGAGAAAGTTTTAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTTTTTCCTTTTTTAAGTTAAATTTTTTTCATCACAACATGTGTGATGATTCCATCCCATTGCCCATAATATATCATTGATTTACAAACCAATGCTTTAAATCTTTGTTTGTTATGCCTTTTGTCTTACTTGCCCCCTCAGTCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGGTATAAGTATTTAGTGATTTTATTGTCCATGTTCAACAGCTTACTAAAGTAATATTGAGTTATCATACCGCTTTACTCTTTGGCAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATACTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGGTATACTTATTTGCTGTTAGCACCTAGGGTATCTGGGATTGTTGGTGCAATCTTTGTTCTCCATTAACCTCTAGCATTGTATGCATGATTTCCTTAAAGTCTGCTGTAGGGATTATCCAAAATCTCCATAAGAACTGGTTCCAAATTAGGTGGGGAACACTGGTTTGAAGTATAGGACGGAATTTTTTCCCCCTTATTTGATTTTTGGGATGCTGCACTGCCCTCTAAATCCAACCCTGTTCTCTCTCCTTTTCTTTTTTTTTTTTCTTTTTCCCTTTTATCCTTTGAGAAATCTGATATAGGTATGTTTATTAATATCAGCTCTAATGGATGCATACAGAGGACCAACTGTTTGATAACCACTACTTTTTCCGACTTTCAAAATTTGACTTTGATTTTGAAGGCATATGTTAAAAATAGATACCAAAACAAAGAAACCCATAATGTTTATAAACTTAATTTTCAAAAACTCAAAACAAATGGGGATCAAATGGGGCCTTAGGTTTTGGTTTTTGAAAATTCGTTTTCTCACAATCCATGATTTTTCATTTTCTCAAGGAAACATTTGAATTCTTGGAAAAACAAAAACAAGTTCCAAAAAACCATGGGTCGTTTGATAGCCAGTTGGTTTTCGCTTTTTCTGTTTTAGAATTAAAAAAATGCTTTTCAAATTCAGAGGAATGTTGAAAACAGACAAAAATAGTTTTTTAAAAATCAAATTTTTGTTTTCTTTATCTCATTCACCACTAATGGAGCGCAACATTTTTTTCTTAATTTTTTTACAGTGACACCTTTCTTTTTTGAATGGTTACAAAATTTATTTATTTTCTTATTATATTATTTAAATACCAGCAACTTTGAAGCGAGATGTAGAGGTGCATGTATTTGTTTGTGGGCTTTTTGAAACAATTAGCATAGTTTGGGATTGGTGTAGCTTTTGCTAGAATTGTGCTTTTTGAAAATTAGTGTTTAGGTAAATTTCAGCTTAACCTAAATTAAAAAGACAGGTTATAATTTTTGATACAGGAATACTAAATTGTTGTGATTCAGCTATAATGACTAAGTAGACATACGATAAAAATTTGCATAATTTTTTAATTTTTTTTTTAAATTTTGTTAATGTTCAAAATTTACAGAAAGAATGTGTTATTCATGATACTTACAAAAGACCTTTCCAATTAACAAGGAGAGAGGTATGACTATATGAAGCAAAAGAATTAGACAATTTACACCAAGAAATGTCTCGGTAAACGACACTCTCGAAAAACCTAGTACGAGTTTGCGTCTTTTCTATCAAAACTCTTTGATTTCACTCTTTCCAAAGATTCCAAAAGAAAACCATGGCCCATTGGAGCTATTGCATTCTTGAAAGGGTGGTACGTTAAAGACCATGTCTAGTAAATCCTTAACCTCCCTAGGAATAAAGAGGTGCCCTATGAAGATATTGAGAATCTTTATCTAGAAGTTATTGTCATATGTACACTGTATAAACAGTTAGTTTCGTGATTCGTTGTCTCTCTTGCATAAAAGGCACCAATTGGAAAATAGAGTCATGTAGGACCTTCTTTTTGTAGGTTTTCATTTGTGCTAATGGCTTTGTACACAATTTCCCATTGAAAAAGACTCAGTTTTTGGGTGATTTCCTTTCCATACTGTCTTGCCTAGTATGGGGTTTGAGTTTTGTCTTTTCTCCCATACCCATCATCAAGGATTTTGGGAGAAGACCCCACCGACACTAGAAAGTCACTTCATCATATAGGATTTTGCATATTTTTTAAAGATTATAAAAGATATGTTTTTAAATTTTTCCGTTTATATTTCTACCATGTTTTCTCTAAATTATTTGTTAAATATTAAAGGAAAAGGTTATAATTTTTTTTTACAAGAACGATACCAGCATTGTTTTTTCAAAGAATGGTTGCATTAAAATATTCAATTTGAAAAATTAGGAGATCAGGAGTTGGTTATGCTACATACTAGATTTATAAAAGTAATCTAAATATCTTAAATTATAAATTGAAAGTTTATTAAGGGAGGCACCTGATTCTACAGGAGTCTAATTTTCAAAACTAGTAGGGAACAAATCATGTGAATCAAAAATGATTTTAATGGATTCGTTCCTAAACAGTTTTACCAAATACAATAAGTGGTTAAGATTTTTCTGTAATCACATTTAACTCTCTTAAAATCCATATCGAATGCAACTTAGCCTTAAAACAGGCCATTCAATGTACTATGTCATCAATGCCTATAAGATTTTAAATGTACTACAATATTTCTTATTACTAAAGGGAATAAATTAACTCTACATTTTCTGTTTCAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTAAGTGCTTTCTATTCTAGTCTTTTTCATTCTTGTGAAGGGAACTCAGATGTAAAGGAAGTTTCTCAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGGTACTTAATCTAAGACTAGTATATTTTTTTGCTTGTATTTGATTTGCTTTTTGGTGCATTTTAAATCTTTTTTTTTTTTTTTTTTTTTTNTTTGTTTATAAACACACATATCAGTAACAGGGTAATAAAAGTAATTGAAAAAAAAAAAAAAGGATATGCACCAGAAAGCAAATCAAATACATGGAAAAAGCCTCTGGACATAGCTTAGTATACTATGTACTGCATTTCGGGTGGCTGATTGGATTGCATGAAGGTTATTTCTATTCTCTCTTATTCAAAGTTAATAAAGAGTTTCACAAAGGGCTAAAGCATCATATTATTTTTGTTTGGTGGAATAAGTAGGTCCAAGTCCAACTAAATCCCAAGATATTAGGTAATAATAAATCCCTAGATACTAGGTAGCAATAAATCTAAATAAATTCGTCTATAGATACTATGTAACAATACTATGTAACAAGATAAATTAGACAGATACTATGTAACAAGATAAATTAGACAGATACTATGTAACAATACTATGTAACAAGATAAATTAGACAGATACTATGTAACAATAATATGTAACCAGATAAATTAGAGAGATCAATTACATACTGGGATTTGATGTAACAAGATAAATTAGAGAGATCAATTACTTACTAGGATTACACAAATATCTCTTTAACTTAAGCTAATCCTTCGACACTCCCTCTCAAATATCATTCATTCCTAACTTGGATACTCATGAAGTACTAAGCTATGAAGTCTTTTTTTTAGCTCATTTGCAGCTGAAGTCGTGAGAACATGTAACTCATGCATGCTATCTCCTTAGAGCACTTCGATAGGCGTGCTTGCCTCTCTTGTGTTCACTTCTTTTGGAGCACTGTCACATGCATTGCTTGTCTCTTTCGTGCTCATTGCTCTTGGAGCCCTTCCATGGGCGTTGCTTGCCTCTTTCATTCTCACTCCTCTTAGAGCACTTTCATGAGCGTTGCTTGCCTCTCTCGTGCTCACTCCTTTTGGAGCACTTCCATGGAAGTGAACACGAAAAAGGTAAACAACGCTTGTAGAAGTGCTCCAAGAGGATCGAGCACGAGATCGACAAGCGACGCCCGTGGAAGTGTTCCAAGTGGAGTCATCATGAGAGAGACAAGCGACACCTGTGGAAGTGCTTAACTCTCCCATGGAAGTGCTCTAAGCAGAGTGAGCACGAAAGAGGCAAGCAACGCTTGTGGAAGTGCTCCAAGAGGAGTGAGCACTAGAGAGACAAGTGATGCCCATGAAAGTGATGCCCATGAAAGTGCTGCAAGGGGCATGCATGAGTTTGAGCTCTCACGACTTCAATGGACAGATGTGCCAACAAAAAAAAACTTCATAGCTTACTATTTCATGAGTTAGTAGTAATGAATGAGAATGAATGATACCGATTACTTGGGTTGAGGGAAATATTGAAGTATTAACTTATATTAAAGAGATATTTGTGTAATCCGAGGGAGTAGTTGATCTCTCTAATTCATCTCTATAGTTACCTACTCTCTAGGGATGAATCTATTTAGATTTATTGCTTCATAATATTTAGGGACTGAGTTAGATTTATTGTTACCTAGTATCTAGGAACCGGGGTAGATTTGTTGTTGTCTAGTATTTAGGGATTTAATTAGCCTTTCTATATTATAAAAGTAGAAAGGCACATGTACCTCTTTGAAATTTAATAAGATAATCAGCAAGAGAGGATTTTGGGAACGTTGTTTGATCAGAAGAGTTTTCCTTTTGCATCAGATTGAACAGATCTATAAAGAGGAGGAAAAGGGGTCCATCTCTGCCCATCAAAAGGCTGAAAGAATTTCTCTAAAGTCTTAAGTTATTGGAAATGACCATCAATGAGCAACACATTCTAAATGAGAAAAGTTGGATTAAGTTGTTTAGATAAGGGGATAAGAATACATCCTTCTTCGTAGGTGGGCTACAATGAGGAACAGTCAAAGTTTTATTTCTATGATAGAAAGTGAAGATGGGCATTTTCTCTCCATAGAAAAGGAGATAGAAGATGAGATCATTGGCTGCTTCCAGGCCACAAGCCTGAATAAGAGATGTAAATTTTCTAGGTATAAAGGATGGATGGTCACATTCCTGAAATAAATAATCTATATCTTCAAATAAGAGTCTTCAACCACAGCATCAAAAGATGGTTTGATTTTCTCCATTCAATCTTCTCATCACACACCAATTTGGGAACGTGGAGTAATTCAACCATTTCCAACGCACCCTATGTCTAGCTTTCCTTGAATGAGGACCCATATAAAGACTGAGTTGAGGAATTACTGAAAACTGACCAGGACTTGGGAGTGCTCTATATTCGAAGGTTGTTTTTCTCAAGAAGGCTGTAAAGCTCAATCCGCACAAGAGTTTTGTCATCGATCAAATTCCTCCTTAAAGGAACAACCAAACTATTAGTAGACGCAGACCAACATTGATTAATAAAGTTCATCGAAGAAGCAATATAGTAAATTCTTGGGAACAAAGATTTAATGGCAAGATCACCAATCCACATATCCTCCCAAAACCAGATTTTTCTTTTTTCATCCTTTACAAGGTTAATTTTAAACCATTCCATTCCTTAAAGGAATATCGGCCGACTATAACCTCCTTCCATAGGGTACTATTTATTTTTATGAATCTCCACCCCCATTTCTAAAATAGGCTGATATTTTTGCTCTTTAAATTATCTATACCAAGGGCTCCTTTGGAAGAGATGTTATTTTACAATTTACAAGAGTGCTACCATTTTCTTTAGCCACTCCTTCCAAAAGAAATCACAAATAGATCTCCAAGCTCCTTAGTACTTTCTTAAGTCATTTAAAAATAGAGAGATAGTAGATTGGGATGCTAGTAAAGACTGCATTTGTGAGTTTGAGTTCCCCCCACTAGAGCAAAGGAAATTGCACCACTTTGCGAGTTGATGCTATTTTCTCCTCCGCTGGAGCCAAGAATTTGGATCACTCCCAATGGCACTCTCTAGTCGGTCATAGGCCAACTTACCAATGTCACATCCCCAACTCTTAGCCACCTCCCTTTATTCACTTTCCTCCAAATATATGCCTGAAATGATAGTCTTTTGTTGGTTGATTTTGAGCGTAGAAACCAATTTATCAACAATCTGAAATCTTCATCAAAATTTTATGTTTCTCACCATTGAATTTTGAGATAAGGAGGATGTTGTTAGCGAATTGTAAATCACTCACATAAGTTTGATTTCTTCCCACCTCAAAGCCATTAATAAAACGCCTTTCTTATGATCCTTCTCTAACATATCTTTCATTACATCAATAACAATCACAAAGAGGACGGGGCTCCTTGCTTGATGAATAAGCAGAAAGAGAAGAGAATGAATCCTTCGTATTTCTTTCTTTGACCTTGTAAAATCAGGTTAAGGAGAGAGAGAAGCCAGAAGGTGAAGAAGTAATAGTCCAGGGGCCCAGCCACTTTATCGAGTTGTAGAGGTGAAGGAGAAAGAATGACTAGGCTTTACCGACTCTAAAGGTGAAAGAGTGAAGGGACAAGTGATTCTATCTTTCACCAAAACCTTTATTTTGAAGGACATCCAACAAGAAATCACAATATACCATGTCATAGGCTTTTTCAAAATCAAGCTTGATAACCCAAACTTTCTTGTTTTTGCCCCTTTAGTTGTCCACCAACTCATTTGCAACAAGGATTGAAAGAGGTTTGAGGCAACATTGCAAACTTCTTAGTCTTGATTAATGGCAAGGCTAGGGGAAAATTTACAGTCGAAAGAGGTTTGAGGCAACATTGCACTATTGTTCGGGATAAGAAACTTAATACGCAGATGATGCCTATTTTCTGTTAGGATTAGGAGACTGTGGGGGTTGCTGATTCTTAGGATCTTCTTGATTGGAACGGGTTTAACTTTGACTTTATAAAAGTTGTTAGTGGTTAGGCATAAATGTGGAAGAGGTTCGGGCTATGCCATATCCCATTGGGTATCAAGCTGAGGTTCACAACTTGAAAGCTAAATTGGATGTCCACGGGGTGGGGCAGGGAAGGGAAGCTTTTCCCATCCTTGTCCCTGTCACCTTTTTCAATCCCCATCCTCACAAAAATTTCTATTTATTTTCACAGACATCAGAGCACGCATTCCCCATCAGGAATTCGTGGAGATCAAATTTTCCATGGGAAATTTTCCCTGTTTTGTATATTTAAAAATATATATTCATTTCAAAGAATCTTTTTAATGGACAATTTCCTTTTTTCAATGTAATTTCTATTATAAATGTTAAACATCCTAATAAGTCTAATCATATTTGTTGTACCAATATTATTTCTAAAAATTTAATACATATATTGTAACGACTCAATTTTTGATACCTTGAATCACAGGTCGCCATGTGTACTCAATGGTAAAAAGGGCGGTGAAATTTTCTTTTGTAAAAAGGGACAAACAATATTCGCGGAGTCAAGTCAAAACTACAAAATACATAAGTTTCAAGAAGCAGCATTTAAAATAATAATGTGCTCTTTATAGCAAGAGGACGTGAACCATTTTTTATGGGAGTGCCCTTTTGTTTGTTCCCTTTGTAGTCAGTTTTTCAAACCTTCAGGATTGTTCTAGCCTGTAACCGGGGTTGTTTATGTTTATTTAAGGAGGTTTTCCTGAATCCTCCTTTTTGAGATAAAGTCTTGTGGCAGACTTGCTTTTTTGCCATTTTGTGAGCATTTGACTTTAGAGGAATAGTAGAATCTTTAAAGGGGCTAAGAGGTTTGGTGAGGAACTGTTAGAGGCGATTAGGTTTAACTCATCTTTGTGGACATCCAATCGGTTTTTTTGTAATTATTCATTTGACATCATTCTTTTGATTGGGATCCAATCTTATAAATAGTTTTGGGTATTTTTATTGACATTCTTTCATTAATCTTAATGAATGCTCACTTTCTTATTAAAAAAACTATCAGCAATTGGAAAAGCGTTTGTCAACTAGTTTCCTTGGGGAGGGGTTTCCTCTACCCCTGATCCTTAGGTAGTCTCTTTTTGGTTTTTGTTGTTTCCTATAAAAAAGTTGATAAAGAGTACCAAACAACATATTGGCTATGGTAAGGTGTTTTATTTACATTATAAAATTTTTTTTTGCTTTATGTATGCAAAAACGTGTGCTAGTTCCAAATCCAAAATATGAAGTTTTGTTCTTTTTTCCTTTTCTTTTTCCTTTTTCTTTTTGTTTGTGCGTGTGTTCTAATTAGAAACTTCATTATTGTTCACAGTCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAAGTACAATTGAACTTCCTCTAAGCTTCTTTAGATTCCTGGAATCTCTAAAATTAATGCTCTTTCGCTTTATTTTCTTAAATTATTTTTTAATGGATGGAGTGAAGAGGAGCAGATATTACCATGAAATGGACAATGGAGGATATTAGGAATGAAAAAAGAGAACGTATATGTCATCACGACAGAAAGGAGAGAAAAGGAAGGAATAACCAGTAAAGATAAGTTGTTTAAGAGGGCTTTAGGAGTCTGCTGAAAGTATGTTGAGGGAAACAAAAGGCAATTCTTAAACGATAAATTGTTCAAAATGAATAGGAGTCGACCCTAAGGGGGTGATCAGTTTACAGTGGGAGGCTTGAGGATTACAAAGGACTTGCAACTATGGATGTAAAAAACCTCATTATATAGGTTTGACAGCTTGCAAAAATAGAGAAATAAATGTGAACGATTATGCCAGATGGAGAAGCCGAAAGGATAAATGACGATATCTATATTGTTGGGAATACATGGGTCAAATCCTGGTGAAAAGTCCAACAGACTCGAGAGTTAAAACTACTGCAGTACATATGGCCTAGATGTAAGGTAACAGCAACACAGAAATTGAAGCCAATGTTTCAAAATAATTTTGAGGCTTGTTTTGAGAGGCTCAAATTTTTAGGCTTGAAACTTGCACCGTCTCTGTACTAAGAGAACACTGAAGATAAAAATTTGAGTAACTGTTTGGAATGTTTATCTAAGTTTGACAGTTAATAGGATTATTCATCGATCTAATATATCTTAGTTTTACTTTTATATGGTCTATTCAAGAATTAAAAGCTTCAAGGTGATAAAATCCTATCCTTTGTGTCAGTAGGTGGACGTGCTCTTGCAGAATGGGTGCTCTCTTGCTTGCCTACTTACATTGTGTTGATCTTCCTAATGTTACAATAAGGGATATGAAGATTGGAAAGAAAGCTGAGAAATTTTGTGGGGAGGGAATACGAAGAAAATTAAGCTAGTTGGTTAATTGTGAAATCACTTCCATACGAAATGATAGTGGAGGTGGGATTGAGAACTTGAAAAGGAGAGAATGGAGACTTGGGCAACCAAATGTCCAGGAGGTTCTTTAATGAAACAATGGAACAAAGTACTTGCACCCAAATTGGAGTGTTTTCCGTTAACTTCCTTGTTGGAGGTTATATTGTTATAGTATGTCTAAATTACTAGCATTTATGCTTGAAGACCAACACGGTAGGAGAGTCCAGGTCTTTTGAGGAGTTCAACAGTTTTGTGCTCTCTTTCTTTTACAAATTAATGTGACAGGGTTCTTTAGAACCGATTTGTTGGTAACAAGGGTCTATGTGGGCAACAAGTTTGAAAAGTATAATCTCATCAGGGCACAGTCGGAGAAAGTGCGAAAAATTCTTGAGGTTAAGAAAATGTTGGCAGCCTTAGTTGATGGAGTGGGGAAGTTGCGTAAGAAAGAAATGGAGAAAGTGAATGTCAAGCTAATGGTCGAAGTTAAATTGGGCAAAGAAGAAGCTCCAGTGAAGCAAGAGAACTTAGGTGAGTTACTGGAATTGTGAGGGAGAAAGGGTACTTAATTTGGTAAAGATGATGCATGGTTGACATTATAGGAAGATGAAATGAACAAAAATGTTGGATTTAAGCCCATGTTTTCCCCTTTGAAAAGCATGAAGCTCATCCTCTTGGACTCATGAGAGATATCCGATTGGTAGGCAGATCAAAGTTGTTAAGAACGAACCTGGATGGTTATTTTTATCATGACTATTAGCTTGTATGCCTAAGGAGGAACTTGAAGACCCGATTTTTTATATTCGTTCCTTGTCAGCTGCGTTTTTTACTGCAAATATTGAACATGAAATCAAGCAATCTGAGATTCGACTTCTAAGTTATGTGTTTTGTCTACTGCCATTGATACACTTGCAGCGATTTATTAGATGCTTTATCTCTAGATGTTATAAGCGCTGGGGCTTTTCTTTAACCAGTAATTCTATTCTCCTTTCAGGGATGTCTATGTGGAGTGTGTATCTTTTGAGCTTTGTTGATATCTTTTCATTTATTTTCATTTCTTCAATGAAATGCTTTGTTTCTTCTTACAAAAATATTGGTAATAAGAAAGTTATGGTAAAGAAAACTCGCTTACTTATTAGGGTGGAGTCCTTTCTTGTAGGTAGTTAAAGACTCCTGTCCTACATTCTTTCATCTTCTTTATTTCGCTTGTTCTCTTACAGAAAAGAGAACTTGAAGCATATTATACTTGTTCCATCATGGAAACCCATTTCTGTGTCTTTACTGTTATGTTTGTTGCAGCGAGAGGAACAGGGAAACGAGAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGAAAACCAAATTTGGAATAGGTGGAGGGGGAGGGGAAGAGGAAGGGGAAGGGCAAAGGGCAAAGGGCGAAGGCAGGGCCATGGTGTTGATGGCAGGGTTTTTAAAGTAGGGCTGTCAAAGAAATCCATTGTAATCAATTACAATGAATGGGTGGTGGTATGGTTCAACAAGTGTAAGAGAGAGACATTAGTTCAAAATGTATTTGGAAAGGTTCCCTCCCTCCCTATCCCCAATCTCCTCCTATTTCCTTTAGGGATTAATTATTAATTAATGTGAAGAATATTATTATGATTATTTTTTTGAAGTTATCTGTGAAAACCAATGGGGAAGGAAGTTGGCAACACTCTTCTACACCAATTAATACGCATAATGGAAACCTTCTCATTGTGTTTGCTA

mRNA sequence

ATGGGGGAGAGAAGAAGCAGTATAAATAGGAGTGAAGTGATGGCGACGACACTCTCTGTTCCTCACGGTCTCGATCTCCATATACCCATTTCCATGGCTCACCATTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTCCTTCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCTCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCATCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTCTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGAATTAGTCATCTGGCCTCCCTTCTCTCTTTCTCTCTCTAAAATACTTTACCTGAGTAAGGTCCATTTTAATTCAGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAATGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGGTATAAGTATTTAGTGATTTTATTGTCCATGTTCAACAGCTTACTAAATGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATACTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGGGTATCTGGGATTGTTGGTGCAATCTTTGTTCTCCATTAACCTCTAGCATTGTATGCATGATTTCCTTAAAGTCTGCTGTAGGGATTATCCAAAATCTCCATAAGAACTGGTTCCAAATTAGGTGGGGAACACTGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGGTTAAGGAGAGAGAGAAGCCAGAAGGTGAAGAATCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAGAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGAAAACCAAATTTGGAATAGGTGGAGGGGGAGGGGAAGAGGAAGGGGAAGGGCAAAGGGCAAAGGGCGAAGGCAGGGCCATGGTGTTGATGGCAGGGTTTTTAAAGTAGGGCTGTCAAAGAAATCCATTGTAATCAATTACAATGAATGGGTGGTGGTATGGTTCAACAAGTGTAAGAGAGAGACATTAGTTCAAAATGTATTTGGAAAGGTTCCCTCCCTCCCTATCCCCAATCTCCTCCTATTTCCTTTAGGGATTAATTATTAATTAATGTGAAGAATATTATTATGATTATTTTTTTGAAGTTATCTGTGAAAACCAATGGGGAAGGAAGTTGGCAACACTCTTCTACACCAATTAATACGCATAATGGAAACCTTCTCATTGTGTTTGCTA

Coding sequence (CDS)

ATGGGGGAGAGAAGAAGCAGTATAAATAGGAGTGAAGTGATGGCGACGACACTCTCTGTTCCTCACGGTCTCGATCTCCATATACCCATTTCCATGGCTCACCATTCTTCCTCTTCCCCTTCCCCTTCCCCCTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCACTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTCCTTCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCTCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCATCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGAGGAAGTCTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGAATTAGTCATCTGGCCTCCCTTCTCTCTTTCTCTCTCTAAAATACTTTACCTGAGTAAGGTCCATTTTAATTCAGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAATGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGGTATAAGTATTTAGTGATTTTATTGTCCATGTTCAACAGCTTACTAAATGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATACTGGAACTTCTTCAACATCTAAATCAGCCAAAGCTGATGGAATGCATTACAGTAACAAGGGTATCTGGGATTGTTGGTGCAATCTTTGTTCTCCATTAACCTCTAGCATTGTATGCATGATTTCCTTAAAGTCTGCTGTAGGGATTATCCAAAATCTCCATAAGAACTGGTTCCAAATTAGGTGGGGAACACTGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGGTTAAGGAGAGAGAGAAGCCAGAAGGTGAAGAATCAAAATCTGCTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAGAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGATCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTCTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGA

Homology

[Close]

BLAST of CmoCh11G012090 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 8.1e-61
Identity = 186/401 (46.38%), Postives = 237/401 (59.10%), Query Frame = 1


Query: 30  ISMAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 89
           +S +H +SS+ S S      S SDPSL R+ SLSRLNA APEFVP R++P          
Sbjct: 20  LSHSHSTSSTTSAS------SSSDPSLLRSLSLSRLNAGAPEFVPGRTTP---------- 79

Query: 90  SGSQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 149
               P P PP      R++IP PPPP  ++H+Y   PP         +PV  PVP+  H+
Sbjct: 80  ----PLPQPP------RMIIP-PPPPHGMLHMYHHQPP-------FNTPVLGPVPIQPHL 139

Query: 150 VSIPNHH-YHPHHRHHHHHSH----HVPVLYHPHNPQYYADNGGFHDPDNVVQQ------ 209
           V + NHH +H  H+HHHH+ H    +VPV  H    Q     GG  +PD V ++      
Sbjct: 140 VPVQNHHPHHRFHQHHHHNRHQNQQYVPVRNHGEYQQR-GGVGGEQEPDLVSKKNDRRDH 199

Query: 210 ---PQKPPVESDYGAP----SRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDP 269
                K    ++ GA     S+T L E+  QK++NQVEYYFSDLNLATTDHLMRFI KDP
Sbjct: 200 SKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDP 259

Query: 270 DGYELVIWPPFSLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKL 329
           +GY                         VPI VVASFKKIKA+IN++SQLA +L+NS+KL
Sbjct: 260 EGY-------------------------VPIHVVASFKKIKAVINNNSQLAAVLQNSAKL 319

Query: 330 MVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLS 389
            V+EDGKKVRR  P++ES +EELQSRI++AENLP+DHC+QNLMKIFS VG          
Sbjct: 320 FVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVG---------- 344

Query: 390 MFNSLLNVKNIRTCQPQISDTGTSSTSKS-AKADGMHYSNK 412
                 +VKNIRTCQPQ + +G    ++S AK+DG  +SNK
Sbjct: 380 ------SVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNK 344

[Close]

BLAST of CmoCh11G012090 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.0e-28
Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 1


Query: 203 PVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPF 262
           P   +  + S+  L++++  K++ QVEY F+D++L   + + + I+KDP+GY        
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGY-------- 186

Query: 263 SLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRR 322
                            VP+S +AS KKIKAL ++H  ++  LR+SSKL+V+EDGKKV+R
Sbjct: 187 -----------------VPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKR 246

Query: 323 KQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNI 382
               ++ D EELQ R V+AENLPDDH +QNL KIF  VG                NVK I
Sbjct: 247 TSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVG----------------NVKAI 275

Query: 383 RTCQPQISDT 393
           R C P  S++
Sbjct: 307 RICHPPESNS 275

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BLAST of CmoCh11G012090 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-15
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 1


Query: 218 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKILYLSKVHF 277
           +E++QK++ QVEYYFSD NL T   L+  + ++  G+                       
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF----------------------- 160

Query: 278 NSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSR 337
             VPIS +A+F K+K L   H+ + + L+ SS L+V+ D KKV+R  PL E  + + +  
Sbjct: 161 --VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLPE--IRDPKIF 220

Query: 338 IVIAENLPDDHCHQNLMKIFSAVGRYKYLVI 369
            V+ ENLP+DH ++N+ +IF   G  K + I
Sbjct: 221 TVLVENLPEDHSNENIREIFGKAGSIKSVSI 224

[Close]

BLAST of CmoCh11G012090 vs. Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-09
Identity = 47/177 (26.55%), Postives = 82/177 (46.33%), Query Frame = 1


Query: 192 PDNVVQQPQKPPVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDP 251
           P N V++ +   +  D     R+++ + ++  +  QV+++F D+NL     L   I K  
Sbjct: 9   PSNKVKEDESTDLRKDREKKKRSRVKQLLAD-IAKQVDFWFGDVNLHKDRFLREQIEKTR 68

Query: 252 DGYELVIWPPFSLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKL 311
           DGY                         + IS++ASF K+K +      +A  ++NSS +
Sbjct: 69  DGY-------------------------IDISLLASFNKMKKITTDSKLIARAVKNSSVV 128

Query: 312 MVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVI 369
            +N  G K+RR+ PL E   +++ SR V  E LP +  H  + ++F   G   Y+ I
Sbjct: 129 EINLSGTKIRRRFPLGEKP-QDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSI 158

[Close]

BLAST of CmoCh11G012090 vs. Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-08
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 227 QVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKILYLSKVHFNSVPISVVA 286
           QVE++F D+NL     +   I +  DGY                         + I+V+ 
Sbjct: 49  QVEFWFGDVNLHKDRFMKSIIEQSRDGY-------------------------IDIAVLT 108

Query: 287 SFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPD 346
           +F ++K L      +A  L+NS+ + VN++G ++RRK+PL E+  +++ SR V  E LP 
Sbjct: 109 TFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPK 164

Query: 347 DHCHQNLMKIFSAVGRYKYLVI 369
              H  L ++FS  G   Y+ I
Sbjct: 169 TVTHIWLERVFSKCGHVVYISI 164

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BLAST of CmoCh11G012090 vs. TrEMBL
Match: A0A0A0K7B6_CUCSA (Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 4.7e-140
Identity = 310/438 (70.78%), Postives = 324/438 (73.97%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S R DLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VSI NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP VESDY
Sbjct: 121 VSIQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNK-----GIW---DCWCNLCSPLTSSIVCMIS--LK-SA 451
           ISD+G SSTSKSAKADGMHYSNK       W   D  CN  SPLTSSI   +   LK SA
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNKVYLFAAAWVIRDFCCNPFSPLTSSIAGTMHDFLKVSA 371

Query: 452 VGIIQNLHKNWFQIRWGT 456
           V I  N H +WFQI+WGT
Sbjct: 421 VRIFHNFHNDWFQIKWGT 371

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BLAST of CmoCh11G012090 vs. TrEMBL
Match: A0A0D2NTE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.5e-122
Identity = 314/617 (50.89%), Postives = 379/617 (61.43%), Query Frame = 1


Query: 40  PSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSGSQPPPPPP 99
           P    SP   S SDP L RN S SRLNAQAPEFVPTRS+P+                   
Sbjct: 4   PETLDSPQSSSSSDPQLFRNLSSSRLNAQAPEFVPTRSTPQ------------------- 63

Query: 100 SSKQSPRILIPSPPPPPAVMHVYPPPPP--GSPFHVPIQSPVPVPVPVPTHVVSIPNHHY 159
             +QS R++IP PPPPP +MHVY PPP   G+ FH+P+  P P  VPVP H+ S+ NHH+
Sbjct: 64  --QQSMRMMIP-PPPPPGIMHVYSPPPAPAGAAFHLPVPIP-PHLVPVPHHM-SMRNHHH 123

Query: 160 HPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGAPSRTKLT 219
           HP+  HHH       V    H  Q + D+G                        S+  L+
Sbjct: 124 HPYQNHHHREQEVEAVAKKDH--QEHKDHGSIS---------------------SKNGLS 183

Query: 220 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKILYLSKVHF 279
           EE + K+LNQVEYYF DLNLATTDHLMRFINKDPDGY                       
Sbjct: 184 EEATLKILNQVEYYFGDLNLATTDHLMRFINKDPDGY----------------------- 243

Query: 280 NSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSR 339
             VPISVVASFKKIKAL+ +HSQLA +LRNS+KL+V+EDGKKVRR+ PL+ESDMEELQSR
Sbjct: 244 --VPISVVASFKKIKALVTTHSQLATVLRNSAKLVVSEDGKKVRRQHPLTESDMEELQSR 303

Query: 340 IVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQISDTGTSST 399
           I++AENLP+DHCHQNLMKIFSAVG                +VK IRTCQPQ S  G SS 
Sbjct: 304 IIVAENLPEDHCHQNLMKIFSAVG----------------SVKTIRTCQPQPSGGGMSSA 363

Query: 400 SKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHKNWFQIRWGTLL 459
           S+SAK+DGMH+SNK                +  +I     + ++  L  ++ +I    LL
Sbjct: 364 SRSAKSDGMHFSNK----------------VHLLI-----MDVLSILVVSYGKISSLVLL 423

Query: 460 HAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEESKSAPPRGKKG 519
           HAFVEYE+V LAEKAVAELN+EGNWR+ LR+RLML              SK A  R KKG
Sbjct: 424 HAFVEYETVELAEKAVAELNEEGNWRSGLRVRLMLR-----------HVSKPAHARVKKG 483

Query: 520 HNGEMNCKDDDT--SEQPHIEKHVDDLSDQADVHPHEQ---------REEQGNEKDGGGQ 579
           H+GE  C++DD   SE P   K  +D S  +D+H H            EE  NEK+  GQ
Sbjct: 484 HDGEGQCEEDDVCISELPSNGKQQEDPSQLSDIHSHGNPASSNPILIGEEHSNEKE-CGQ 498

Query: 580 RRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS--SIEQAGTVKQQPPGPRMPDG 639
           ++ RNR RGKGRGR+QYH+NH+++HGNHVGTPPS+SS+  S EQA T  +QPPGPRMPDG
Sbjct: 544 KKGRNRGRGKGRGRTQYHNNHHSSHGNHVGTPPSASSNWVSNEQA-TGAKQPPGPRMPDG 498

Query: 640 TRGFSMGRGKPVSVNMA 642
           TRGF+MGRGKPV+VN A
Sbjct: 604 TRGFAMGRGKPVAVNTA 498

[Close]

BLAST of CmoCh11G012090 vs. TrEMBL
Match: B9SSZ3_RICCO (Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.4e-106
Identity = 290/628 (46.18%), Postives = 350/628 (55.73%), Query Frame = 1


Query: 41  SPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSGSQPPPPPPS 100
           S S S    S SDPSLSRN S S+LNAQAPEFVPTR S        H     QPPPPPP+
Sbjct: 19  SQSSSSSTSSSSDPSLSRNVSFSKLNAQAPEFVPTRPSS-------HQQQQQQPPPPPPT 78

Query: 101 SKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHHYHPH 160
           +  +   +IP PPPPPA+MH+YPPP   SPFHVPI SPVPV     +HV+ + NHH H H
Sbjct: 79  ASLNRLTVIPPPPPPPAMMHIYPPP---SPFHVPIHSPVPV-----SHVIPVHNHHPHHH 138

Query: 161 HRH-------HHHHSHH-----------------VPVLYHPHNPQYYADNGGFHDPDNVV 220
           H+H       HHHH HH                 VP+ YH +   +Y   G   +     
Sbjct: 139 HQHSNNPNHNHHHHQHHNQQYVPVRNHNQNSSQYVPLQYHGNQNHHYVKKGQLEE----- 198

Query: 221 QQPQKPPVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYEL 280
           +  +K    SD+ + +     +E  QKLLNQVEYYFSDLNLATTDHLMRFINKDPDGY  
Sbjct: 199 EVEKKEVASSDHMSKNDRNGNDEPMQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGY-- 258

Query: 281 VIWPPFSLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNED 340
                                  VPISVVASFKK+KA INS+S LA+ILRNS+KL+V+ED
Sbjct: 259 -----------------------VPISVVASFKKVKAAINSNSHLASILRNSAKLVVSED 318

Query: 341 GKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSL 400
           GK+VRR+ PL+E D+EELQSRIV+AENLP+DHCHQNLMKIFSAVG               
Sbjct: 319 GKRVRRQNPLTELDVEELQSRIVVAENLPEDHCHQNLMKIFSAVG--------------- 378

Query: 401 LNVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKS 460
            +VK IRTC PQ S  G SS S+SAK +GMH+SNK               + V   S++ 
Sbjct: 379 -SVKTIRTCPPQTSGGGASSASRSAKGEGMHFSNK-------------LHAFVEYESVEI 438

Query: 461 AVGIIQNLH--KNWFQIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTC 520
           A   +  L+  +NW   R G  +   ++  S     +     + +G+             
Sbjct: 439 AEKAVAELNDEQNW---RSGLRVRLMLKRASKPTQARGKKGHDGQGH------------- 498

Query: 521 TVKEREKPEGEESKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQR 580
                   E E S S  P                       EK ++D S Q D H HE  
Sbjct: 499 ------SEEEEVSTSEQPPN---------------------EKQIEDPSQQYDGHSHEHS 524

Query: 581 -EEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGTVK 640
            E+  NEKD G QR+ RNR RGKGRGR QYHH   NN GNHVGTPPS++    EQ    K
Sbjct: 559 GEDHVNEKD-GAQRKGRNRGRGKGRGRGQYHH---NNRGNHVGTPPSNNLIINEQPSMAK 524

Query: 641 QQPPGPRMPDGTRGFSMGRGKPVSVNMA 642
            QPPGPRMPDGT+GF+MGRGKPV+VN+A
Sbjct: 619 -QPPGPRMPDGTKGFAMGRGKPVAVNIA 524

[Close]

BLAST of CmoCh11G012090 vs. TrEMBL
Match: A0A0S3RIF7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G343200 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.2e-104
Identity = 287/615 (46.67%), Postives = 353/615 (57.40%), Query Frame = 1


Query: 35  HSSSSPSPSPSPPLPS---QSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 94
           H S S +P  SPP  +   QSDPSLSRN S SRLNAQAPEFVPTR++PR DL        
Sbjct: 3   HESLSETPDISPPSSTSQLQSDPSLSRNGSFSRLNAQAPEFVPTRATPRADL-------- 62

Query: 95  SQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVS 154
                      Q PR+++P PPP  +++HVY PP      H+PIQ           HVV 
Sbjct: 63  -----------QQPRLVVPPPPPASSMVHVYSPP------HLPIQG----------HVVP 122

Query: 155 IPNHHYHPHHRHHHHHSHHVPVLYHPHN--PQYYADNGGFHDPDNVVQQPQKPPVESDYG 214
           + NHH      H+  H HHVPV Y PH+   QYY  +      D+ VQQ Q   V+ D  
Sbjct: 123 VQNHH------HNLGHQHHVPVHYRPHHHPHQYYVSS------DSTVQQSQ---VDQDRL 182

Query: 215 APSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKI 274
             S++KL++E SQK+LNQVEYYFSDLNLATTDHLMRFINKDP+G+               
Sbjct: 183 PSSKSKLSDEASQKILNQVEYYFSDLNLATTDHLMRFINKDPEGF--------------- 242

Query: 275 LYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSES 334
                     VPISVVASFKKIKALI SHS LA +LRNSSKL+V+EDGKK+RR+ PL+ES
Sbjct: 243 ----------VPISVVASFKKIKALITSHSLLATVLRNSSKLVVSEDGKKIRRQYPLTES 302

Query: 335 DMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQI 394
           D+EELQSRIV+AENLP+DHCHQNL+K+FS VG                +VK IRTC PQ 
Sbjct: 303 DIEELQSRIVVAENLPEDHCHQNLLKVFSVVG----------------SVKTIRTCPPQT 362

Query: 395 SDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHKNWF 454
           S++G SS  +  K DG+  SNK               + V   S++ A            
Sbjct: 363 SNSGASSALRLGKVDGLPLSNK-------------LHAFVEYESIELAE----------- 422

Query: 455 QIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEESKS 514
                                +AVAELNDEGNWR+ LR+RLM               SK 
Sbjct: 423 ---------------------RAVAELNDEGNWRSGLRVRLM-----------HRRMSKP 460

Query: 515 APPRGKKGHNGEMNCKDDDTS-EQPHI-EKHVDDLS-DQADVHPHEQREEQGNEKDGGGQ 574
           +  RGKKG + E+ C +D TS  +PH  EK ++D S     +H H   E+ G EK+  GQ
Sbjct: 483 SQGRGKKGLDVEVGCDEDYTSVPEPHASEKQLEDASFPDTQLHEH-AGEDHGYEKE-TGQ 460

Query: 575 RRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTR 634
           R+ R+R RGKGRGR   H N      N VGTPPS+++   +Q   + +QPPGPRMPDGTR
Sbjct: 543 RKGRSRGRGKGRGRVHCHQN------NRVGTPPSNNTIFTDQ--VIAKQPPGPRMPDGTR 460

Query: 635 GFSMGRGKPVSVNMA 642
           GFSMGRGKPV+VN+A
Sbjct: 603 GFSMGRGKPVAVNIA 460

[Close]

BLAST of CmoCh11G012090 vs. TrEMBL
Match: A0A061EXJ3_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 277/599 (46.24%), Postives = 343/599 (57.26%), Query Frame = 1


Query: 50  SQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSGSQPPPPPPSSKQSPRILI 109
           S SDP LSRN S SRLNAQAPEFVPTRS+P+   Q        Q        +QS R++I
Sbjct: 15  SSSDPQLSRNLSSSRLNAQAPEFVPTRSTPQQQQQQQQQQQQQQQQQQ--QQQQSHRMMI 74

Query: 110 PSPPPPPAVMHVYPPPPPG-SPFHVPIQSPVPVPVPVPTHVVSIPNHHYHPHHRHHHHHS 169
           P PPPPPA++HVYPPPPP  + FH+P+ SPVP+P     H+V +P  H+ P   HHHHH 
Sbjct: 75  P-PPPPPAMLHVYPPPPPPPAAFHLPVHSPVPMP----PHMVPVP--HHMPMRNHHHHH- 134

Query: 170 HHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGAP-SRTKLTEEVSQKLLNQ 229
           HH P   HPH+ +            +  Q  +      D+GA  S+  L+EE + K+LNQ
Sbjct: 135 HHPPFQNHPHHHREQEVEAVVKKDHHKEQHKE----HKDHGASCSKNGLSEEATLKILNQ 194

Query: 230 VEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKILYLSKVHFNSVPISVVAS 289
           VEYYFSDLNLATTDHLMRFINKDP+GY                         VPISVVAS
Sbjct: 195 VEYYFSDLNLATTDHLMRFINKDPEGY-------------------------VPISVVAS 254

Query: 290 FKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDD 349
           FKKIKALI +H+QLA +LRNS KL+V+EDGKKVRR+ PL+ESDMEELQSRI++AENLP+D
Sbjct: 255 FKKIKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPED 314

Query: 350 HCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQISDTGTSSTSKSAKADGMH 409
           HCHQNLMKIFS+VG                +VK IRTCQPQ S  G SS S++AK+DGMH
Sbjct: 315 HCHQNLMKIFSSVG----------------SVKTIRTCQPQPSGGGVSSASRTAKSDGMH 374

Query: 410 YSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHKNWFQIRWGTLLHAFVEYESVV 469
           +SNK               + V   S++ A   +  L+                      
Sbjct: 375 FSNK-------------LHAFVEYESVELAEKAVAELN---------------------- 434

Query: 470 LAEKAVAELNDEGNW----RNALRLRLMLTCTVKEREKPEGEESKSAPPRGKKGHNGEMN 529
                     DEGNW    R  L LR +   T    +K    E                +
Sbjct: 435 ----------DEGNWRSGLRVRLMLRRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQSND 494

Query: 530 CKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQY 589
            + +D S+   I  H                EE  NEK+ GGQ++ RNR RGKGRGR+QY
Sbjct: 495 KQQEDPSQLSDIHSH------------EYPGEEHSNEKE-GGQKKGRNRGRGKGRGRAQY 500

Query: 590 HHNHNNNHGNHVGTPPSSSSSSI-EQAGTVKQQPPGPRMPDGTRGFSMGRGKPVSVNMA 642
           H+N +N+ GNHVGTPPS++S+ +  +  TV +QPPGPRMPDGTRGF+MGRGKPV+VN A
Sbjct: 555 HNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAVNTA 500

[Close]

BLAST of CmoCh11G012090 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 236.5 bits (602), Expect = 4.6e-62
Identity = 186/401 (46.38%), Postives = 237/401 (59.10%), Query Frame = 1


Query: 30  ISMAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSS 89
           +S +H +SS+ S S      S SDPSL R+ SLSRLNA APEFVP R++P          
Sbjct: 20  LSHSHSTSSTTSAS------SSSDPSLLRSLSLSRLNAGAPEFVPGRTTP---------- 79

Query: 90  SGSQPPPPPPSSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 149
               P P PP      R++IP PPPP  ++H+Y   PP         +PV  PVP+  H+
Sbjct: 80  ----PLPQPP------RMIIP-PPPPHGMLHMYHHQPP-------FNTPVLGPVPIQPHL 139

Query: 150 VSIPNHH-YHPHHRHHHHHSH----HVPVLYHPHNPQYYADNGGFHDPDNVVQQ------ 209
           V + NHH +H  H+HHHH+ H    +VPV  H    Q     GG  +PD V ++      
Sbjct: 140 VPVQNHHPHHRFHQHHHHNRHQNQQYVPVRNHGEYQQR-GGVGGEQEPDLVSKKNDRRDH 199

Query: 210 ---PQKPPVESDYGAP----SRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDP 269
                K    ++ GA     S+T L E+  QK++NQVEYYFSDLNLATTDHLMRFI KDP
Sbjct: 200 SKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDP 259

Query: 270 DGYELVIWPPFSLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKL 329
           +GY                         VPI VVASFKKIKA+IN++SQLA +L+NS+KL
Sbjct: 260 EGY-------------------------VPIHVVASFKKIKAVINNNSQLAAVLQNSAKL 319

Query: 330 MVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLS 389
            V+EDGKKVRR  P++ES +EELQSRI++AENLP+DHC+QNLMKIFS VG          
Sbjct: 320 FVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVG---------- 344

Query: 390 MFNSLLNVKNIRTCQPQISDTGTSSTSKS-AKADGMHYSNK 412
                 +VKNIRTCQPQ + +G    ++S AK+DG  +SNK
Sbjct: 380 ------SVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNK 344

[Close]

BLAST of CmoCh11G012090 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 126.7 bits (317), Expect = 5.1e-29
Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 1


Query: 203 PVESDYGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPF 262
           P   +  + S+  L++++  K++ QVEY F+D++L   + + + I+KDP+GY        
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGY-------- 186

Query: 263 SLSLSKILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRR 322
                            VP+S +AS KKIKAL ++H  ++  LR+SSKL+V+EDGKKV+R
Sbjct: 187 -----------------VPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKR 246

Query: 323 KQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNI 382
               ++ D EELQ R V+AENLPDDH +QNL KIF  VG                NVK I
Sbjct: 247 TSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVG----------------NVKAI 275

Query: 383 RTCQPQISDT 393
           R C P  S++
Sbjct: 307 RICHPPESNS 275

[Close]

BLAST of CmoCh11G012090 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-16
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 1


Query: 218 EEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSKILYLSKVHF 277
           +E++QK++ QVEYYFSD NL T   L+  + ++  G+                       
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF----------------------- 160

Query: 278 NSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSR 337
             VPIS +A+F K+K L   H+ + + L+ SS L+V+ D KKV+R  PL E  + + +  
Sbjct: 161 --VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLPE--IRDPKIF 220

Query: 338 IVIAENLPDDHCHQNLMKIFSAVGRYKYLVI 369
            V+ ENLP+DH ++N+ +IF   G  K + I
Sbjct: 221 TVLVENLPEDHSNENIREIFGKAGSIKSVSI 224

[Close]

BLAST of CmoCh11G012090 vs. TAIR10
Match: AT4G32720.1 (AT4G32720.1 La protein 1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-08
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 1


Query: 216 LTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDG-YELVIWPPFSLSLSKILYLSK 275
           LTEE ++ +L QVE+YFSD NL   D L + + +  DG   L +   FS  +   L L  
Sbjct: 6   LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFS-KMRGYLKLGD 65

Query: 276 VHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPL--SESDME 335
              + +P   + +             +A+ LR SS L +++DGKKV R   L   E  +E
Sbjct: 66  SKGDDIPEDTIKA-------------VADTLRTSSALKISDDGKKVGRSTELLKLEDLIE 125

Query: 336 ELQSRIVIAENLPDDHCHQNLMKIFSAVGR 363
           +L +R V A     D   +++   FS  G+
Sbjct: 126 QLNARTVAASPFSYDVKREDVESFFSQYGK 141

[Close]

BLAST of CmoCh11G012090 vs. TAIR10
Match: AT1G79880.1 (AT1G79880.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-07
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1


Query: 214 TKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK---IL 273
           +   EE ++KLL QVE+YFSD NL T   L R + K  DG   ++  P   S S+   +L
Sbjct: 3   SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDG---LVSLPLVCSFSRMRNLL 62

Query: 274 YLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLS--E 333
            L  ++   +P  +V              ++AN+LR S  L V+ +G+++ R   LS  E
Sbjct: 63  GLGNINREDIPPRIV-------------EEVANLLRTSDFLKVSNNGQRIGRGTKLSKPE 119

Query: 334 SDMEELQSRIVIA 342
             +E++  R + A
Sbjct: 123 EVLEQVHRRTLAA 119

[Close]

BLAST of CmoCh11G012090 vs. NCBI nr
Match: gi|659092715|ref|XP_008447184.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis melo])

HSP 1 Score: 630.6 bits (1625), Expect = 3.1e-177
Identity = 395/616 (64.12%), Postives = 424/616 (68.83%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VS+ NH YHPHHRHHHH SHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHRHHHH-SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHK-- 451
           ISD+G SSTSKSAKADGMHYSNK               + V   S++ A   +  L+   
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNK-------------LHAFVEYESVELAEKAVAELNDEG 420

Query: 452 NWFQIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEE 511
           NW   R    L   +   S     +     N E N+++           V   E+P    
Sbjct: 421 NW---RNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKD-----------VDASEQPA--- 480

Query: 512 SKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQ 571
                                       IEKHVDDLSDQ DVHP EQREE GNEKDGGGQ
Sbjct: 481 ----------------------------IEKHVDDLSDQVDVHPPEQREEHGNEKDGGGQ 491

Query: 572 RRVRNRVRGKGRGRSQYHHNHNN--NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDG 631
           RRVRNRVRGKGRGRSQYHHNHNN  NHGNHVGTPP SSS++IEQAGT+KQQPPGPRMPDG
Sbjct: 541 RRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSSTTIEQAGTMKQQPPGPRMPDG 491

Query: 632 TRGFSMGRGKPVSVNM 641
           TRGF+MGRGKPV+VNM
Sbjct: 601 TRGFAMGRGKPVTVNM 491

[Close]

BLAST of CmoCh11G012090 vs. NCBI nr
Match: gi|449444086|ref|XP_004139806.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus])

HSP 1 Score: 629.4 bits (1622), Expect = 6.9e-177
Identity = 396/616 (64.29%), Postives = 423/616 (68.67%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S R DLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VSI NH YHPHHRHHHH SHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP VESDY
Sbjct: 121 VSIQNHPYHPHHRHHHH-SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHK-- 451
           ISD+G SSTSKSAKADGMHYSNK               + V   S++ A   +  L+   
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNK-------------LHAFVEYESVELAEKAVAELNDEG 420

Query: 452 NWFQIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEE 511
           NW   R    L   +   S     +     N E N+++           V   E+P    
Sbjct: 421 NW---RNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKD-----------VDTSEQPA--- 480

Query: 512 SKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQ 571
                                       IEKHVDDLSDQ DVHP EQREE GNEKDGGGQ
Sbjct: 481 ----------------------------IEKHVDDLSDQVDVHPPEQREEHGNEKDGGGQ 491

Query: 572 RRVRNRVRGKGRGRSQYHHNHNNN--HGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDG 631
           RRVRNRVRGKGRGRSQYHHNHNNN  HGNH+GTPP SSS++IEQAGT+KQQPPGPRMPDG
Sbjct: 541 RRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSSTTIEQAGTMKQQPPGPRMPDG 491

Query: 632 TRGFSMGRGKPVSVNM 641
           TRGFSMGRGKPV+VNM
Sbjct: 601 TRGFSMGRGKPVTVNM 491

[Close]

BLAST of CmoCh11G012090 vs. NCBI nr
Match: gi|700188979|gb|KGN44212.1| (Lupus la ribonucleoprotein [Cucumis sativus])

HSP 1 Score: 506.5 bits (1303), Expect = 6.7e-140
Identity = 310/438 (70.78%), Postives = 324/438 (73.97%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S R DLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VSI NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP VESDY
Sbjct: 121 VSIQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNK-----GIW---DCWCNLCSPLTSSIVCMIS--LK-SA 451
           ISD+G SSTSKSAKADGMHYSNK       W   D  CN  SPLTSSI   +   LK SA
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNKVYLFAAAWVIRDFCCNPFSPLTSSIAGTMHDFLKVSA 371

Query: 452 VGIIQNLHKNWFQIRWGT 456
           V I  N H +WFQI+WGT
Sbjct: 421 VRIFHNFHNDWFQIKWGT 371

[Close]

BLAST of CmoCh11G012090 vs. NCBI nr
Match: gi|659092717|ref|XP_008447185.1| (PREDICTED: la-related protein 6B isoform X2 [Cucumis melo])

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 315/527 (59.77%), Postives = 339/527 (64.33%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VS+ NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHK-- 451
           ISD+G SSTSKSAKADGMHYSNK               + V   S++ A   +  L+   
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNK-------------LHAFVEYESVELAEKAVAELNDEG 402

Query: 452 NWFQIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEE 511
           NW   R    L   +   S     +     N E N+++           V   E+P    
Sbjct: 421 NW---RNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKD-----------VDASEQPA--- 402

Query: 512 SKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQ 554
                                       IEKHVDDLSDQ DVHP EQ
Sbjct: 481 ----------------------------IEKHVDDLSDQVDVHPPEQ 402

[Close]

BLAST of CmoCh11G012090 vs. NCBI nr
Match: gi|659092719|ref|XP_008447186.1| (PREDICTED: la-related protein 6B isoform X3 [Cucumis melo])

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 315/527 (59.77%), Postives = 339/527 (64.33%), Query Frame = 1


Query: 32  MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPHSSSG 91
           MA HSSSS           QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP      
Sbjct: 1   MAQHSSSS-----------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQP------ 60

Query: 92  SQPPPPPPSSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 151
             PPPP    KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  -LPPPP----KQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 152 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 211
           VS+ NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 212 GAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYELVIWPPFSLSLSK 271
            APSR+KLT+EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGY              
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGY-------------- 240

Query: 272 ILYLSKVHFNSVPISVVASFKKIKALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSE 331
                      VPISVVASFKKIKALINSH QLANILRNSSKL+V+EDGKKV+RKQP SE
Sbjct: 241 -----------VPISVVASFKKIKALINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSE 300

Query: 332 SDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGRYKYLVILLSMFNSLLNVKNIRTCQPQ 391
           SDMEELQSRIVIAENLP+DHCHQNLMKIFSAVG                +VKNIRTCQPQ
Sbjct: 301 SDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG----------------SVKNIRTCQPQ 360

Query: 392 ISDTGTSSTSKSAKADGMHYSNKGIWDCWCNLCSPLTSSIVCMISLKSAVGIIQNLHK-- 451
           ISD+G SSTSKSAKADGMHYSNK               + V   S++ A   +  L+   
Sbjct: 361 ISDSGASSTSKSAKADGMHYSNK-------------LHAFVEYESVELAEKAVAELNDEG 402

Query: 452 NWFQIRWGTLLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTVKEREKPEGEE 511
           NW   R    L   +   S     +     N E N+++           V   E+P    
Sbjct: 421 NW---RNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKD-----------VDASEQPA--- 402

Query: 512 SKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQ 554
                                       IEKHVDDLSDQ DVHP EQ
Sbjct: 481 ----------------------------IEKHVDDLSDQVDVHPPEQ 402

The following BLAST results are available for this feature:

BLAST of CmoCh11G012090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP6B_ARATH	8.1e-61	46.38	La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2	[more]
LRP6C_ARATH	9.0e-28	38.95	La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1	[more]
LRP6A_ARATH	2.3e-15	34.44	La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1	[more]
LARP7_XENTR	3.2e-09	26.55	La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1	[more]
LARP7_DANRE	6.1e-08	29.58	La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1	[more]

BLAST of CmoCh11G012090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7B6_CUCSA	4.7e-140	70.78	Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1	[more]
A0A0D2NTE8_GOSRA	1.5e-122	50.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1	[more]
B9SSZ3_RICCO	4.4e-106	46.18	Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV...	[more]
A0A0S3RIF7_PHAAN	3.2e-104	46.67	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G343200 PE=...	[more]
A0A061EXJ3_THECC	3.3e-101	46.24	RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]

BLAST of CmoCh11G012090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43970.1	4.6e-62	46.38	RNA-binding protein	[more]
AT3G19090.1	5.1e-29	38.95	RNA-binding protein	[more]
AT5G46250.1	1.3e-16	34.44	RNA-binding protein	[more]
AT4G32720.1	5.0e-08	31.33	La protein 1	[more]
AT1G79880.1	3.2e-07	31.58	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmoCh11G012090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092715\|ref\|XP_008447184.1\|	3.1e-177	64.12	PREDICTED: la-related protein 6B isoform X1 [Cucumis melo]	[more]
gi\|449444086\|ref\|XP_004139806.1\|	6.9e-177	64.29	PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus]	[more]
gi\|700188979\|gb\|KGN44212.1\|	6.7e-140	70.78	Lupus la ribonucleoprotein [Cucumis sativus]	[more]
gi\|659092717\|ref\|XP_008447185.1\|	1.1e-131	59.77	PREDICTED: la-related protein 6B isoform X2 [Cucumis melo]	[more]
gi\|659092719\|ref\|XP_008447186.1\|	1.1e-131	59.77	PREDICTED: la-related protein 6B isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012090.1	CmoCh11G012090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 225..307 score: 2.0
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 218..323 score: 1.2
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 214..330 score: 1
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 216..326 score: 1.4
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 216..333 score: 2.72
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 454..489 score: 1.9E-6coord: 328..371 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 455..478 score: 1.2E-5coord: 328..376 score: 1.
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 105..167 score: 2.7E-198coord: 457..640 score: 2.7E-198coord: 378..411 score: 2.7E-198coord: 53..85 score: 2.7E-198coord: 279..356 score: 2.7E-198coord: 206..253 score: 2.7E
None	No IPR available	PANTHER	PTHR22792:SF52	LA-RELATED PROTEIN 6B	coord: 378..411 score: 2.7E-198coord: 457..640 score: 2.7E-198coord: 279..356 score: 2.7E-198coord: 105..167 score: 2.7E-198coord: 53..85 score: 2.7E-198coord: 206..253 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G012090	CmaCh11G011660	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G012090	Cp4.1LG04g00260	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G012090	Carg26983	Silver-seed gourd	carcmoB1113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None