CmaCh11G011660 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G011660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding protein
Location	Cma_Chr11 : 6762298 .. 6779193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCCCTCCACTGGGCTTTTTCCTTTTATTTTTCTTTTTTCTTTTTTGTTTTTGTTTTTTTTTTTTATTTTTATTTTTTTACTTTCTTCTTCTTCTTCGTCTTCGTTGTCGGAGGCAGACGACACTCTCTGTTCCTCACGGTCTCGATCTCCATTTTTCCAGTTCCCAGAAACCTCCATACCCATTTCCATGGCTCACCATTCTTCCTCTTCCCCTTCTCCTTCCCCTTCCCCTTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCAGTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCCCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCACCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGGGGAAGTCTCCCAGAAGCTTTTGAATCAGGTTGCCTTTTCTTTTCACTAGATCCTCTATGTTTATGCGCTTCACTTCGTGTCAAGATTTTGATATCTGCTTGTTCAATATTTACGTTGGTATGGAACTGAATTTCATATCCTTCTGTCAAATCTCTATGGGATAGTTGCTTGGGTTAATTTTATGAAGCACCGTAACTGTTTTGAGCCTGCGAATTATTTTGCTTCTCTAGGCACATACTATGTTCGCTAGAAGTCAGGGTTACTTGAAAAGGGGTTAGAGCTCCCTGCCAATTCCGTTCTGTACTCTCTTTTCCTTTTGCACTAATATTGTTGATATCAGCAAGATTTCTTTTTTGCTTGAGATTCAAGATAAATGGTCAACTAGGGATAGCTAAATATGTTGGTTAACATGATTGGAAACTAACTATATATTGAATACATTATTGAAGCAGACACTAAAAAGAAGGTTCACTGGTCCTCGTGAGCAAGGAGCATGGACTTTTCTTGTTGGAACAATTTGAGTATTCTAGGAGCTATGGGCATTCTCTTATGCGCAAAGTGTTGCTGTTGGACATACACGCATAGATATGCTTCATACACATGTCTACATGTGATTTGGAAAAGGGTTTTTTTATTTTATTTTAATATTTTCAAATTTGAGATACTTTTGGAACTCACAAGAGAAACTGGTGGAGACTTGGTGAGGCACACTGTGGAAGATATGTTGAGAAGAGAAGATGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTAATCTACTTTGGGATATCAAAATCAAACCAAATTTTAGTTTCAATGAAAACACGATGATGTACATTTGAACTTTTACAGCACGTATTTGGCTTCTCTTTTTCTCAAAGCTGGTGCATGTGCACCCATTGCAAACACGTTCATTTGTATCCCATGTTTTTGGGCTCTCTTCTAGAGGGCTTATGCAAGAGGATCCTCTCGTCTTCTTTCTTTTCTTACTAGTGGTGGATATTTTGTGTAGATTAGTTTCCACTGGAGTGAGGGCTTTTGAGTTGAGAGGCAGAATCTTCACTTGCCGCTTCCTTGGTTCAATTTTATTCTAGGAGAGATGACGTGTGTCAATCTTAATTTTATATACTTTGAGCTCATTTTTGGTCTTAAGATTAACTAGTTAAGAGTGCGTCCTTGGTATTAATTGTGACCCCTCTAAACTGAGTACTTGGGCATCTGTAGTTGGTTGTTAGGTAGGTTCTCTTTCGTCTTCTTACCTTGTGCTTCCTTTAGGCCACAACCAAAGGTAGCTTGCAACCTAGAGTAGGGCTTTTCTCAAAGGGAGGGAAGCTGAATCTTTTAGTGTGAACTTTGTGAGATTCCTTCTTACTTCATGTCAGTGTTTAGGATTCTTGTTTTTGTGTAAGAACTTTGAGAAGATTATGAAGGACTTTTTGTGGGAAAGGGTTGATGGGGAGGAGGTCCTCATTTGATTAGGTGGAATAATTTTTTCAAAGTAGATCAATTAGGGGGGGTTGGGAATCCAGTTTGAGACTTCATAATTTGGCATTGTTGGCTAAATGGTTATGACATTTCCTATTGGAATTGAATTCTTTGTGGCATATGGTCAACGTGAGCAAACGACCTCCATCCATCCAAATGGGTCTAATGACACGGTAAAAAGTCCTTGTTTTGTGATTGCTTCAAGTCCTTTTCCTTAGTTATGTGACTCGCTTGTTGGAGATGACTTGAGCACCTATTTTTGGGAGTATTTTTGGGTGGGTCATAGACCCTTGTGTTTGGAGTTCTTTGGTTCTATCATTTATCTACTTCAAGGATGTGCCAGGCTCTTCCATTATTTCTTCTTTTGGTCCTTGTCTTTTGTTCAAAATTGGATTTTTTAATCCCTTGTTGGATAGGGAGTCTTTGTTGTTGCTGCTCTTATTGAATTTTTGTAGTATCATTCTCCATATGGGAACTAAGATTCTTTGTCCATCTAAAGGTTCTCTTGTGGTTTCTTTTTTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTTCTTTTAGTTATGGAAGGAAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTCATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGCTTTGAGCTATTTCTTGTACTTATTGGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTGCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTCATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGCTTTGAGCTATTTCTTGTACTTATTGGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTGCTTTTTGTTATGGAAGGCAAATANTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTCATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGGTAGGGAGGCATTTGAGGATTTGAGCTATTTCTTGTACTTATTAGCCTTTTGTGTAGCTTTAGTGCTCTTCCCTCCCTGCTTTTTGTTATGGAAGGCAAATATTCCCAAGAAGGTCAAATTATTTGCTTGGTAGGTTCTTCATGAGGATGTTAACACTATGGACCAGATTCTGAGACACTATTTCTTTGCTTTGAGGCTGCAGATGGTATATTCTTGTTAGGGAGGCATTTGAGAATTTGAGCTATTTCTTGTACAGGTGCAAGTTTCTTGCTTATTTTTGGGGTGTGTTTTCCCCTTAACTGAGACTGTTGTCTTATGAAGGAGGAGATCCCACTTCACTCCCCATTTAGGGAGATGAGTTGGAGGGCCACTTTTTTTGCGGTCATTCGGGGTATTTGGTTGGAGAGGAATAATAAGATTTTTAGAGGGTGGAGAGGTCTTTGGAGGAATTTTGGTCCTTGGCTAGGTTTAACGTCTCGCGTTGGGTGTTTGTATCCAAGGGATTTATCTTGTTGGATTGGAGTTTGGTTTGGCTCCTTTTGAAGCTGTCTTTTTGTATACCTTTGGCTGGTTTGCTGGTCTCCTTTGTATTCTTTCAATCAAGGTTTCAGTTTTTTGATAAAACAAGAAACAGCATGTATTTGGGCTACCTTTCATAATCTATTTCTACAAAGAAAACTAAAAAAAATGCTATTTTCCCTTGTGAGTCTATAGATTTGGACACCATGTATTTGTGCAACCTTTCAAAGAGTGTTTAAGCCAACTTTCATTGCCGGTTCTGCAAACTTCTTCCCTTTTTTTGCAAAGGGGCAGACACTAGGTAGAGCAAAGATATTATCCAAATATCCTAGTATGAACAATCATTGAAGTTAGCCTCCAGAAACTATTCTTCTGCTGATCACTTCTCTCCGTCTCCCACCCTTATGACTTTATCCATAACAGCTTCAACATCTAAGATAAGACTTTCTTTTGGTTCCTTCATATTTTGTCGATTTTGTTTTTTAAGGAGATTTTGTCGTGGAGATAAGTAATTGTTGCGTGGGCAAGACATTTTCTCTACCCTTCTTCTGAATAAATTGTTTTCATAATTGACGATAAGTTTGGTAGTGACTCTTTTTGGGGAGTGTGGTTAGGAAAAGATATGTGACTTTAAAGGATAATGGGGTTGAAAGCTAATTCTTTTGGGAGATTTGGTCAGAGAGGAAGCAAAGTTTATTGAGAGGAAACTTTTTGACACTAGCTTATCAAATCTTGCTCTAGAACTTGGTTTAATGTTACAGCTCAAATAATCTCATATCATGACACATCTTGCAGTAGTAGTTCTATAGATGGTCTGGTATAACCCTTCAACTATTGTATTTTTTTTGAAGTATATTTTTTTGATAAATTTTCTATCACCTATGAAGTACAATTACTCTACTAAACCCACACAAACCCAAAACTTCACCCCATACACTGCCTTATAAGTTAGTAAATTTTACCTTTTAATCCCCTAAACAGCCAGAGTATCTAGAATCCAAGGATTGTTGGTGTAGAACTTCAATATGCTGATGTTTGGAAGGGTGAAAACTGTGATTATCTTTTGCTTATAAAAGGGACAGCAGAACATGAAGATCTTGAAGCTTGGATATCGACCTCTGGTTTTTGAGAGGATGGTTAACATAATAACCACCACAACACCTTGGATCTTGCATCTGCTGAAGGAAACCATGTAGAAAACTGGAGAATAACTTTCCGTAGAAGAATATCCATAAAACTAACTTTTTGGGCAAATTGCATGAAAAGCAATGTCATATTCTTTGTTCCTTGTCAAAAAAAGGAAAGGAAAAAAATGACTCTTTAAAGCTGTCAAATGGATATTCTACATATATCATATAAAACTCAGAAGAGACAATTGAGGTAGGTATCTGATAAAGTCTCTTGTGTTCCTATGACCCTACATTAAGTTAAAAAAGGAAAAAGAAAAAAGAAAAAAAGTGGGAGACGGCGAACAATGGATAAAAGTATTTGGTTATCCTTGTTTTAAAGTTGATATAGTGGTGAGCTGTCCTTTCTGACTCAACGTTAGTAAGTTGGATCATTCCTTATGGCTTTTGGTGCTCACTATTACCACTCAACAAGGATCAATTTGATGACTTTGAAATCATAAATTTGAATCTTTATGACTATTATTTTAGGATATCACTTTTCTGCAAGTATCCTTTGAAAATAAAAAGGTACATAAGTTCGCCAGGACTCTTATCATGGGTATCAATTAAAAAGTTGAACAGTTAATTTAGTAGGTTTGGTACTTTTACTGTGTTTTAAATTCCAATATTAATTTGATATTGTTTTCTATGCCTACCTTCTTTTTATCATTCACTTTATTAAATTATTTGCGAAATTATGGTTTTTAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGGTAAGATTCTCTCTTGGCATTTTTATTTGAATTTCACATTCTCTTAACGTGTGGAGATCCTGCTCTTACCATCCTGCCATTGGTGGATTGCTTTGGTAAAATTCAATACTTGATGATGATGATTTAGAATTAGTCATCTGGCTTCCCTTCTCTCTTTCTCTCTCTAAAATACTTTACCTGAGTAAGGATCATTTTAATTCAGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTGTGAGTATTTAATTTATTTTAACATCCTTCTTTACCTCTGTTGCCCTGAAGTTATCCTCAATTCTCTTTCTTGTTTTGTTCCCCTCATGCTTTTTGGTTCAATATTCTGCAGATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTATTTATTTAATTTAATGATTACATAAATTATATAAAGAGAAAGTTTTAGTTTTCTCTCTCTCTCTCTCTCTCTTTCCTTTTTTAAGTTAAATTTTTTTCATCTGGTTCTATTTTCATCAAAACACGTGTGATGATTCCATCCCAGTGCCCATAATATATCATTGATTTACAAACAAATGCTTTAAATCTTTGTTTGTTATGCCTTTTGTCTTACTTGCCCCCTCAGTCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGGTATAAGTATTTAGTGATTTTATTGTTCCATGTTCAACAGCTTACTAAAGTAATATTGAGTTATCATACCGCTTTACTCTTTGGCAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAACTGATGGAATGCATTACAGTAACAAGGTATACTTATTTGCTGTAGCATAGGGTATCTGGGATTGTTGGTGCAATCTTTCTTCTCCATTAACCTCTAGCATTGTATGCATGATTTCCTTAAAGTCTGCTGTAGGGATTATCCAGAATCTCCATAAGAGCTGGTTCCAAATTAGGTGGGGAACACTGGTTTGAAGTAAAGGACGGAATTTTTTCCCCCCAATTTGATTTTTGGGATGCTGCATTGCCCTCTAAATCCAACCGTGTTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTCTTTCCCTTTTACCCTTTTAAAAATCTGATATAGGTATGTTTATTAATATCAGCTCTAATGGATGCATACAGAGGACCAACTGTTTGATAACCACCACTTTTTTCGATTTTCAAAATTTGACTTTGATTTTGAAGGCATGTGTTAAAAATAGATACCAAAACAAAGAAACCCATAATGTTTATAAATTTAATTTTCAAAAACTCAAAACAAAAGGTGATCAAATGGGGCCTTAGTTTTTGGTTTTTGAAAATTCGTTTTCTCACAACCTCTTTACCATGATTTTTCATTTTCTCAAGGAAACATTTGAATTCTTGGAAAACAAAAACAAGTTCCAAAAAACCATTGGTCGTTTGATAGCCAGTTGGTTTTCGCTTTTTCTGTTTTTGTTTTTAGTTTTTTAAAGACATGTTTGGTAACCAATTCATTTTTAGTTTTAGAATTAAAAAAATGCTTTTCAAATTCAGAGGAATGTTGAAAACAGACAAAAATAGTTTTTTAAAAATCAATTTTTTGTTTACTTAATCTCATTCACCACTAATGGCCTGATGTTGGGTGGAGGCATGGCATATAGAACGCAGCATTTTTTTCTTAATTTTTTTACAGCGACACCTTTCTTTTTTGAATGGTTACAAAATTTATTTATTTTCTTTATTATATTATTTAAATACTAGCAACTTTGAAGCGAGACGTAGAGGCGCATGTATTTGTTTGTGGGCTTTTTGAAACAATTAGCATAGTTTGGGAATGGTGTAGCTTTTGCTAGAATTGTGCTTTTTGAAAATTAGTGTTTAGGTAAATTTCAGCTTAACCTAAATTAAAAAGACAGGTTATAATTTTTGATACAGGAATACTAAATTGTTGTGATTTAGCTATAACGACTAAGTAGACATACGATAAAAATTTGCATAATTTTTTATTTTTTTTTTCAAATTTTGTTGATGTTTGAAATTTACAAAAAGAATGTGTTATTCATGATACTTACAAAAGACCTTCCCAATTAACAAGGAGAGAGGTATGACTATATGAAGCAAAAGAATTAGACAATTTACACCAAGAAATGTTTTGGTAAACAACACTTTTGAAAAACCTAGTACGAGTTTGCATCTTTTCTATCAAAGCTCTTTGATTTCACTCTTTCCAAAGATTCCAAAAGAAAACCATGGCCCATTGGAGCTTTTGCATTCTTGAAAAAAGGGTGGTACGTTAAAGACAATGTCTAGTAAATCCTTAACCTCCCTAGGAATAAAGAGGTGCCCTATGAAGATATTGAGAATCTTTATCTAGAAGTTATAGTCATATGTACACTGTATAAACCGATAGTTTCGTGATTCGTTGTCTCTCTTGCATAAAAGGCACCAATTGGGAAATAGAGTCATGTAGGACCTTTTTGTAGGTTTTCATTTGTGCTAATGGCTTTGTACACAATTTCCCATTGAAAAAGACTTCACAGTTTTTGGGTGATTTCCTTTCCATACTGTCTTTCCTAGTACGGGGTTTATGAGTTCTGTCTTTTCTCCCATACCCATCATCAAGGATTTTGGGGAGAAGACCCCACACTAGAAAGTCATTTCATCATAAAGGATTTTGCATATTTTTTATTGATTATAAAAGATATGTTTTTATATGTTTTCCGTTTATATTTCTACCATGTTTGCTCTAAATTATTTGTTAAATATTAAAGGAAAAGGTTATAATTTTTTTTTTTTTATAAAAACGATACTAGCATTGTTTTCTCAAAGAATGGTTGCATTAAAATATTAAAATATTCAATTTGAAAAATTCGGAGATCAGGAGTTGGTTATGCTACTTGCTAGATTTATAAAAGTAATCTAAATGTCTTAAATTATAAATTGAAAGTTTATTAAGTGAGGCACCTGATTCTACAGGAGTCTAATTTTCAAAACTAGTAGGGAGCAAATCATGTGAATCAAAAATGATTTTAATGGATTCGTTCCTAAACAGTTTTACCAAATACAGTAAGTGGTTTAGATTTTTCTGTAAGCGCATTTAACTTTCTTAAAATCCATATCAAATGCAACTTAGCCTTAAAACAGGCCATTGAATGTACTATGTCATCAATGCCTATAAGATTTTAAATGCACTACAATATTTCTTATTACTAAAGGGAATAAATTAACTCGTGTTTCAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTAAGTGCTTTCTATTCTAGTCTTTTTCATTCTTGTGAAGGGAACTCAGATGTAAAGGAAGTTTCTTAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGGTACTTAATCTAAGACTAGTATATTTTTTTGCTTGTATTTGATTTGCTTTTTGGTGCATTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTATAAACACACATATAAGTAATAGGGCAATAAAAGTAATTGAAAAAAAAAAAAAGGATATGCACCAGAAAGCAAATCAAATACATGGAAAAAGCATCTGGACATAGCTTAGTATACTATGTACTGCATTTCGGGTGGCTGATTGGATTGCATGAAAGTTATTTCTATTCTCTCTTATTCAAAGTTAATAAAGAGTTGCACAAAGGGCTAAAGCATCATATTATTTTTGTTTTGTGGAATAAGTAGGTCCAAGTCTAACTAAATCCCTAGATATAAGGTAATAATAAATCCCTAGATACTAAGTAGCAATAAATCTAAATAAATTCCTCTAGATAGTATGTAACAATACTATGTAACAAGATAAATTAGAGAGATCAATTACTTACTGGGATTGCACAAATATCTCTTTAACTTGAGCCAATCCTTAGACACTCCCTCTCAAATATCATTCATTCCTAACTTGGATACTCATGAAGTACTAAGCTATGAAGTCTTTTTTTTAGCTCATTTGCAGCTGAAGTCATGAGAACATGTAATTCATGCATGCTATCTCCTTAGAGCTCTTCGATAGGTGTGCTTGCCTCTCTTGTGTTCACTTCTTTTGGAGCACTGTCACATGCATAGCTTGTCTCTTTCGTGCTCATTCCTCTTGGAGCACTTCCATGTGCGTTGCTTGCCTCTTTCGTTCTCACTCCTCTTAGAGCACTTTCATGAGCGTTGTTTGCCTCTCTCGTGCTCACTCCTTTTGGAGCACTTCCACGGAAGTGAGCACGAAAAAGGTAAACAACGCTCGTAGAAGTGCTCCAAGAGGATCAAGCACGAGATAGACAAGCGACGCCTGTGGAAGTGTTCCAAGTGGAGTCATCATGAGAGAGACAAGCGACACCTGTGGAAGTGCTTAACTCTCCCATGAAGTGTTCAAAGTGGAGTGAGCACGAAAGAGGCAAGCAACGCCCGTGGAAGTGCTCCAAGAGGAGTGAGCACTAGAGAGACAAGTGATGCCCATGAAAGTGCTGCAAGGGGCATGCATGAGTTTGAGCTCTCATGACTTCAACGGACAGATGTGCCAACAAAAAAAACTTCATAGCTTACTATTTCATGAGTAGTAATGAATGAGAATGAATGATACCGATTGCTTGGCTTGAGGGAAATATTGAAGGATTAGCTTATATCAAAGAGATATTTGTGTAATCCAAGGGAGTAGTTGATCTCTCTAATTCATCTCTATAGTTACCTAGGGATGAATTTATTTAGATTTATTGTTTCATAATATTTAGGGACTGAGTTAGATTTATTGTTACCTAGTATCTAGGAACCGGGGTAGATTTGTTGTTGTCTAGCATTTAGGGATTTAATTAGCCTTTCTATATTACAAAAGTAGAAAGGCACATGTACCTCTTTGAAATTTAATAAGATAATCAGCAAGAGAGGATTTTGGGAACGTTGTTTGATCAGAAGAGTTTCCCTTTTGCATTAGATTGAACAGATCAATAAAGAGGAGGAGTAGGGGTCCATCTCTGCCCATCAAAAGGCTGAAGAATTTCTCTAAAGTCTTAAGTTATTGGAAATGACCATCAATGAGCAACACATTCTAAATGAGAAAAGTTGGATTAAGTTGTTTAGATAAGGGGATAAGAATACATACTTCTTCATAGGTGGGCTACAACGAGGAACAGTCAAAGTTTTATTTCTATGATAGAAAGTGAAGATGGGCATTTTCTCTCTATAGAAAAGGAGATAGAAGATGAGATCATTGGGTGCTTCCAGAAGTTGTACTCCAAAGATAATGGCCAAATCACCAGGGAAGCTCAGAAGACAAAAAACCAGGAAGCAACAGAAAAACCAGCTCCCAACAGAATAAACCAAGAACAAACTTTTATGAATTCTGAAGGATAGAGTGAACAACCAATAAGAGCCAAAACCCCAACAAAACCAGAAGAAAAACAACGACAAGAGCCTTGGAGAAGAAGCTGTTGAAAAAAAAAAAACTTGGAGAAGGAGCTACCAAACTATACCCAAACACTGTTTCCATCAGAATTCGTGGAAGAAATTTCACAAAACTCAAGGCCACAAGCCTGAATAAGAGATGTAAATTTGCTACGTGTAAAGGATGGATGGTCACATTCCTGAAATAAATAATCTATATCTTCAAATAAGAGTCTTCAACCACAATATCAAAAGATGGTTTGATTTTCTCCATTCAATCTTCTCATCACACACCAATTTGGGGACGTGGAGTAATTCAACCATTTCCTTTGTCGAACGCACCCTATGTCTAGCTTTCCTTGAATGAGGATCCATATAAAGACTGAGTTGAGGAATTACTGAAAACTGACCATCTCCTTTTCAAGGGTCCAGGACTTGGGAGTCATCTATATTCGAAGGTTGTTTTTCTCAAGAAGGCTGTAAAGCTCAATCCACACACGAGTTTTGTCATCGATCAAATTCCTCCTTAAAGGAACAACTAAACTATTAGTAGACGCAGACCAACATTGATTAATAAAGTTCATTGAAGAAGCAATATAGTAAATTCTTGGGAACAAAGATTTAATGGCAAGATCACCAATTCACATATCCTCCCAAAACCAGATTTTTTTTTCATCCTTAACAAGGTTAATTTTAAGCCATTTCTTAGTTTTACACAAGCCTCAAAGATGGATTTCCAAGGACCTTTGCATGGCCCATGGGTATTATGCTTTGGAATCCTTTCCTCAAAGGAATATCGACCGACTATAACCTCTTTCCATAGGGTACTATTTATGTTTATGAATCTCCACCCCCATTTCTAAAATAGGCTGATATTTTTGTCCATCAAATTATCTATACCAAGGGCTCCTTTACCAGTGGGAAGTAATGTTATTTTACAATTTACAAGAGTGCTACCATTTTCTATAGCCACTCCTTCCAAAAGAAATCACAAATAGAGCTCTAAGCTCCTTAGTACTTTCTTAAGGCATTTAAAAATAGAGAGATAGTAGATTGGGATGCTAGTAAGGACTGCATTTGTGAGTTTAAGTTCCCCCCACTAGAGCAAAGGAAATTGTGCCACTTTGCGAGTTGAGGCTATTTTCTCCTCCACTGGAGCCAAGAATTTGGATCACTCCCAATGGCACTCCCTAGTAGATCATAGGCCAACTTACCAATGTCACATCCCCAACTCTTAGCCACCTTTAATCTTAATGAATGCTCACTTTCTTATTAAAAAAACTATCAGCAACTGGAAAAGCGTTTGTCAACTAGTTTCCTTGGGGAGGGGTTTCCTCTACCCCTGATCCTTAGGTTGTCTTTTTTTTGGTTTTTAGGGTTTCCTATAAAAATGTTGATAAAGAGTACCAAACAACATATTGGCTATGGTAAGGTGTTTTATTTACATTATAAAGATTTTTTTTGCTTTATGTATGCAAAAACGTGTGCTAGTTCCAAATCCAAAATATGAAGTTTTGTTCTTTTTTTCCTTTTTTTTTCGTTTGTGCGTGTGTTCTAATTAGAAACTTCATTATTGTTCACAGTCAAAATCTACTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAAGTACAATTGAACTTCCTCTAAGCTTCTTTAGATTCCTGGAATCTCTAAAATTAATGCTCTTTCGCTTTATTTTCTTAAATTATTTTTTAATGGATGGAGTGAAGAGGAGCAGATATTACCATGAAATGGACAATGGAGGATATTAGGAATGAGAAAAGAGAATGTATATGTCATCACGACAGAAATGAGAGAAAAGGAAGGAATAACCAGTAAAGATAAGTTGTTTAAGAGGGCTTTAGGAGTCTGCTGAAAGTATGTTGAGGGAAACAAAAGGCAATTCTTAAACGATAAATTGTTCAAAATGAATAGGAGTCGACCCTATGGGGGTGATCAGTTTACGGTGGGAGGCTTGAGGATTACAAGGACTTGCAACTATAGATGTAAAAAACTTCATTATATAGGTTAGACGGCTTGCAAAAATAGAGAAATAAATGTGAACGATTATGCCAGATGGAGAAGCCGAAAGGATAAATGACGATATCTATATTGTTGGGAATACATGGGTCAAATCCTGGTGAAAAGTCAACAGACTCAAGAGTTAAAACTACTGCAGTACATATGGCCTAGATGTAAGGTGACAGCAACACAGAAATTGAAGCCAATGTTTCAAAATAATTTTGAGGCTTGTTTTGAGAAGCTCAAATTTTTAGGCTTGAAACTTGCACTGTCTCTGTACTAAGAGAACACTGAAGATAAAAATTTGAATAACTATTTGGAATGTTCATCTAAGTTCGACAGTTAATAGGATTATACATCGATCTAATATTATCTTAATTTTACTTTTATATGGTCTATTCAAGAATTAAAAGCTTCAAGGTTGTCCTTAGCATTTATGCTCAATCAATCATATGTAGAGATATTGATTATACACAGAGTTACTAAGATTTCAAAACATTGGTTGAGAGGCATGGGATAAAATCCTATCCTTTGTGTGAGTAGGTGGATGTGCTCTTACAGAATCGGTGCTCTCTTGCTTGCCTACTTGGTTAATCTTCCTAATGTTACAATAATAAGGGATATGAAGATTGGAAAGAAAACTGAGAAATTTTGTGGGGAGGGAACATGAAGAAAATTAAGCTAGTTGGTTAATTGAGAAATCACTTCCATACGAAATGATAGTGGAGGTGGGATTGAGAACTTGAAAAGGAGAATGGAGACTTGGGCAACCAAATGTCCACGAGGTTCTTTAATGAAACAATGGAACAAAATAATTCCACCCAAATTGGAGTGTTACTAGCATTTATGCTTGAAGACCAACACGGGAGGAGAGTCCAGGTCTCTTGAAGAGTTCAACAGGTCTACGTGGGCAACAGGTTTGAAAAGTAAAATCTCATCAGGGGACAGTCGGAGAAAGTGCGAAAAATTCTTGAGGTTAAGAAAATGTTGGCAGCCTTAGTTGAGGGAGTGGGGAAGTTGCGTAAGAAAGAAATGGAGAAAGTGAATGTCAAGCTAATGGTCGAAGTTAAATTGGGCCAAGAAGCTCCAGTGAAGCAAGAGAACTCAGGTGAGTTACTGGAATTGTGAGGGAAAAAGGGTACTTAATTTGGTAAAGATGACGCATGGTTGACATTATAGATTTCATCTTCCAAAAATGTTGGATTAAGCCCATGTTTTCCCCTTTGAAAAGCATGAAGCTCATCCTCTTGGACTCATGAGAGATATCCGATTGGTAGGCAGATCAAAGTTGTTGAGAACGAACCTGGATGGTTATTTTTATCATCACTATTAGCTTGTATGCCTAAGGAGGAACTTGAAGACCCGAGTTTTTATATTTGTTCCTTGTCAGCTGCGTTTTTTACTGCAAATATTGAACATGAAATCAAGCAATCTAGATTCGACTTCCAAGTTATGTGTTTTTGCCATTGATACACTTGCAGCATTTATTAGATGCTCTATTTCTCTAGATGTTCTAAGCGCTGGGGCTTTTCTTTAACCTGTAATTCTATTCTCCTTTCAGGGATGCCCATGTGGAGTTTGTATCTTTTGAGCTTTGTTGATATCTTTTCATTTATTTTCATTCCTTCAATGAAATGCTTTGTTTCTTACAAAAATATTGGCAATACGAAAGTTGTGGTAAAGAAAACTCGCTTACTTATTAGGTTGGAGTCCTTTCTTGTAGGTAGTTAAAGACTCATGTCCTACATTCTTTCATCTTCTTTATTTCGCTTGTTCTCTTACAGAAAAGAGAACTTGAAGCATATTATACTTGTTCCATCATGGAAACCCATTTCTGTCTCAATACTGTTATGTTTGTTGCAGCGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGGTCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTTTCCATGGGGCGGGGAAAGCCAGTGAGTGTGAATATGGCTTGAAAACCAAATTTGGAATAGGTGGAGGGGGAGGGGAAGGGGAAGAAGGGCAAAGGGCAAAGGGCAAAGGGCAAAGGGCTAAGGCAGTGCAATGGTGTTGATGGCAGGGTTTTTAAAGTAGGGCTGTCAAAGAAATCCATTGTAATTACAATTACAATGAATGGGTGGTGGTATGGTTCAACAAGTATAAGAGAGAGTTATTAGTTTAAAATGTATTTGGAAAGGTTCCCTCCCTCCCTCCCTATCCCCAATCTCCTCCTATTTCCTTTAGGGATTAATTAATTAATGTGAAGAATATTATTATTATGATTATTATTTTGAAGTTATCTGTGAAAACCAATGGAGAAGGAAGTTGGCAACACTCTTCTACACCAATTAATACGCATAATGGAAACCTGCTCATTGTGTTTGCTATTGCTCGCTTTGACATTTGTTATTTATTGACCTTTAATAAGCTGTTTTGCTATGCTTCAAAATTAAGCATACCCTACATATTTTCTTTATTTCTTTTGCAAAGTAACTTTGTTTGGTTTGTTAGATGCATGAGGACGCCACGTGGGAACGGGAAGATGAGATAAGAGAAAAATATCTTGGAACTAGTGCAGGAGTTTGAGACTTTCGAGGATGAATGTTCCAGGGTATATAATGTAATGGGTGTTAAAAAAACGTTACGCAGTCGCCTGGAGCCTTCACTGTGACACACATGTGTCATAGAGTAGCTCGCTTAGGCCATAGGGCTCAAAGGTGGTGGAGAAATGATATCTTCCTCTACCATATATTTTGAGGTATTTCCAATCATTCTTGAGTAGACGTCATATGGCAAACAGTCAAACGTCCCCATGCAACGTCCATAGAAATTCTGACTTCTTGATGTATTGGAGGATGCACTATTCTCCTTGGTCGCATCATGACACTTCTTAATTTTAGCTCTTATGTGGTCGGATGTCGCCACTTGAGGGTCGTCCCTTGTCTGTCTTACGTGTGGGGTCACAGATCTACTTTCTCTCATGAAGTTGTAACAAAGCACTAGTGGTAGAGTCTAGACCTTCACTCTAATTTTCCCTCTCCTCTTTTTTTCAATTTTTTCTTATTATAATAAATCTTATTTAATTAGTTCATTTTCTATCTTTAA

mRNA sequence

TTCGCCCTCCACTGGGCTTTTTCCTTTTATTTTTCTTTTTTCTTTTTTGTTTTTGTTTTTTTTTTTTATTTTTATTTTTTTACTTTCTTCTTCTTCTTCGTCTTCGTTGTCGGAGGCAGACGACACTCTCTGTTCCTCACGGTCTCGATCTCCATTTTTCCAGTTCCCAGAAACCTCCATACCCATTTCCATGGCTCACCATTCTTCCTCTTCCCCTTCTCCTTCCCCTTCCCCTTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCAGTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCCCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCACCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGGGGAAGTCTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAACTGATGGAATGCATTACAGTAACAAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGTCAAAATCTACTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGGTCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTTTCCATGGGGCGGGGAAAGCCAGTGGAGGGGGAGGGGAAGGGGAAGAAGGGCAAAGGGCAAAGGGCAAAGGGCAAAGGGCTAAGGCAGTGCAATGGTGTTGATGGCAGGTTCATTTTCTATCTTTAA

Coding sequence (CDS)

ATGGCTCACCATTCTTCCTCTTCCCCTTCTCCTTCCCCTTCCCCTTCCCCTCCTCTCCCTTCCCAATCCGATCCATCTCTTTCCCGGAACTCTTCTCTCAGCCGTCTCAACGCCCAGGCTCCTGAGTTCGTCCCCACTCGCTCCTCCCCTCGTCCCGATCTACAACCTCCGCAGTCCTCCTCTGGCTCTCAGCCTCCTCCTCCTCCTTCCAAGCAATCGCCTCGGATTCTCATTCCTTCTCCTCCTCCGCCGCCGGCCGTGATGCATGTTTATCCTCCCCCTCCCCCTGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTTCCTGTTCCTGTTCCTGTTCCCACTCATGTTGTTTCTATTCCGAATCATCACTATCATCCTCATCATCGCCACCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCATCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGACCCTGACAACGTTGTGCAGCAACCTCAGAAGCCTCCGGTTGAGTCCGACTATGGTGCTCCGTCTAGGACTAAACTCACTGGGGAAGTCTCCCAGAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGGCAACTACTGATCATTTGATGAGGTTTATCAATAAAGATCCCGATGGATATGTGCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGCCACTCTCAGCTAGCCAATATTTTGCGCAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTTAGACGCAAACAACCACTTTCAGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTCATTGCGGAGAATTTACCTGATGATCATTGCCACCAAAACCTCATGAAGATTTTTTCTGCTGTTGGGAGTGTTAAAAACATTCGAACGTGTCAACCTCAAATCTCAGATAGTGGAACTTCTTCAACATCTAAATCAGCCAAAACTGATGGAATGCATTACAGTAACAAGTTGCACGCATTCGTGGAATATGAATCTGTTGTGCTGGCTGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTTAGGCTTCGTTTGATGCTTACATGCACGTCAAAATCTACTCCACCGCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATACCTCTGAACAACCACATATTGAGAAGCATGTTGATGACCTTTCTGATCAAGCTGATGTTCATCCGCATGAACAACGAGAGGAACAGGGAAACGAAAAAGATGGAGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGTAAAGGACGTGGTCGGTCACAGTACCACCATAATCACAATAATAACCATGGGAATCATGTGGGAACTCCGCCTTCGAGTAGCTCTAGCAGCATCGAACAGGCAGGTACAGTGAAGCAGCAGCCTCCAGGGCCACGAATGCCAGACGGAACAAGAGGATTTTCCATGGGGCGGGGAAAGCCAGTGGAGGGGGAGGGGAAGGGGAAGAAGGGCAAAGGGCAAAGGGCAAAGGGCAAAGGGCTAAGGCAGTGCAATGGTGTTGATGGCAGGTTCATTTTCTATCTTTAA

Protein sequence

MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPPPPSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPVEGEGKGKKGKGQRAKGKGLRQCNGVDGRFIFYL

Homology

[Close]

BLAST of CmaCh11G011660 vs. Swiss-Prot
Match: LRP6B_ARATH (La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2)

HSP 1 Score: 416.8 bits (1070), Expect = 3.7e-115
Identity = 293/548 (53.47%), Postives = 360/548 (65.69%), Query Frame = 1


Query: 8   SPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPP 67
           S S S S +    S SDPSL R+ SLSRLNA APEFVP R++P                 
Sbjct: 21  SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTP----------------- 80

Query: 68  PPSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHH-Y 127
            P  Q PR++IP PPPP  ++H+Y   PP         +PV  PVP+  H+V + NHH +
Sbjct: 81  -PLPQPPRMIIP-PPPPHGMLHMYHHQPP-------FNTPVLGPVPIQPHLVPVQNHHPH 140

Query: 128 HPHHRHHHHHSH----HVPVLYHPHNPQYYADNGGFHDPDNVVQQ---------PQKPPV 187
           H  H+HHHH+ H    +VPV  H    Q     GG  +PD V ++           K   
Sbjct: 141 HRFHQHHHHNRHQNQQYVPVRNHGEYQQR-GGVGGEQEPDLVSKKNDRRDHSKRESKNDQ 200

Query: 188 ESDYGAP----SRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVV 247
            ++ GA     S+T L  +  QK++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VV
Sbjct: 201 VTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVV 260

Query: 248 ASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLP 307
           ASFKKIKA+IN++SQLA +L+NS+KL VSEDGKKVRR  P++ES +EELQSRI++AENLP
Sbjct: 261 ASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLP 320

Query: 308 DDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKS-AKTDGMHYSNKLHAFVEYES 367
           +DHC+QNLMKIFS VGSVKNIRTCQPQ + SG    ++S AK+DG  +SNK+HAFVEYE 
Sbjct: 321 EDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEI 380

Query: 368 VVLAEKAVAELNDEGNWRNALRLRLML---TCTSKSTPPRGKKGHNGEMNCKDDD--TSE 427
           V LAE+AV EL++ GNWR+ L++RLML   T   K    RG+KGH+ ++  ++DD  TSE
Sbjct: 381 VELAERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSE 440

Query: 428 QPHIEKHVDDLSDQADVHPHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH----- 487
           Q  IEK  DD S + D H  EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H     
Sbjct: 441 QQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQ 500

Query: 488 ---HNHNNNH-----GNH-------VGTPPSSS-SSSIEQAGTVKQQPPGPRMPDGTRGF 509
              H+HN NH     GNH       VGT PS++  +++EQ G  KQQPPGPRMPDGTRGF
Sbjct: 501 NNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGF 540

[Close]

BLAST of CmaCh11G011660 vs. Swiss-Prot
Match: LRP6C_ARATH (La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-56
Identity = 147/340 (43.24%), Postives = 203/340 (59.71%), Query Frame = 1


Query: 172 PVESDYGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVAS 231
           P   +  + S+  L+ ++  K++ QVEY F+D++L   + + + I+KDP+GYVP+S +AS
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAS 186

Query: 232 FKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDD 291
            KKIKAL ++H  ++  LR+SSKL+VSEDGKKV+R    ++ D EELQ R V+AENLPDD
Sbjct: 187 TKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDD 246

Query: 292 HCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVL 351
           H +QNL KIF  VG+VK IR C P        S S   K D +  SNK+HA +EY++ V+
Sbjct: 247 HSYQNLEKIFGVVGNVKAIRICHP------PESNSSRPKGDFL-MSNKIHALIEYDNTVI 306

Query: 352 AEKAVAELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHV 411
           A+KAV +LNDE NWR  LR+RL+L C+ KS     K   N +    DD   E P  E   
Sbjct: 307 ADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL---KNRRNFDGILIDD---ELPSYESG- 366

Query: 412 DDLSDQADVHPHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHH---NHNNNHGNHV 471
               D   +H  E Q +  G++ + GG   +  + RGKGRGRS   +       + G  +
Sbjct: 367 ---EDSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGRSFGIGL 426

Query: 472 GTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKP 508
           G      S    ++ + K    GPRMPDGTRGF+MGRGKP
Sbjct: 427 GVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of CmaCh11G011660 vs. Swiss-Prot
Match: LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-44
Identity = 125/325 (38.46%), Postives = 191/325 (58.77%), Query Frame = 1


Query: 188 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 247
           E++QK++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + +
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 248 ILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSV 307
            L+ SS L+VS D KKV+R  PL E  + + +   V+ ENLP+DH ++N+ +IF   GS+
Sbjct: 162 ALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGSI 221

Query: 308 KNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRN 367
           K++  C P    +    + K  K +      +LHAFVEYE+V  AEKA A LN+E +WRN
Sbjct: 222 KSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWRN 281

Query: 368 ALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQRE 427
            LR++L+     K    R  +    E++ K+ DT+ + H ++   + + +   H + +  
Sbjct: 282 GLRVKLLEQAAGKFAQRRPAR---REVD-KEKDTTGRVH-DQTGGEKNKKTREHQNHRLH 341

Query: 428 EQGN--EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGT 487
              N  + DGG  ++ +N  +G+  G+GR Q   NH   +G   GT  SSS  +      
Sbjct: 342 HSDNPADDDGGNHQKDKNGNKGRVVGQGRRQ---NHQGGNGIGHGTASSSSHPNYHPV-E 401

Query: 488 VKQQPPGPRMPDGTRGFSMGRGKPV 509
           V ++PPGPRMPDGTRGF+MGRGK +
Sbjct: 402 VSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of CmaCh11G011660 vs. Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-13
Identity = 68/266 (25.56%), Postives = 117/266 (43.98%), Query Frame = 1


Query: 161 PDNVVQQPQKPPVESDYGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDP 220
           P N V++ +   +  D     R+++  ++   +  QV+++F D+NL     L   I K  
Sbjct: 9   PSNKVKEDESTDLRKDREKKKRSRVK-QLLADIAKQVDFWFGDVNLHKDRFLREQIEKTR 68

Query: 221 DGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQS 280
           DGY+ IS++ASF K+K +      +A  ++NSS + ++  G K+RR+ PL E   +++ S
Sbjct: 69  DGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDS 128

Query: 281 RIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKL 340
           R V  E LP +  H  + ++F   G V  +    P+   +G                 K 
Sbjct: 129 RTVYVELLPKNVTHSWIERVFGKYGMV--VYVSIPRYKSTG---------------DPKG 188

Query: 341 HAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNC---- 400
            AF+E+E+   A KA+  LN+              T  +K  PP     H+    C    
Sbjct: 189 FAFIEFETQEQAAKAIEVLNNPPEEAPRKAGMFPKTVKNKHLPPVEVTEHSITEGCGTEE 248

Query: 401 -----KDDDTSEQPHIEKHVDDLSDQ 418
                K    + +  +EK  +D  +Q
Sbjct: 249 KKKKKKKKSKARKDSVEKAEEDTKEQ 255

[Close]

BLAST of CmaCh11G011660 vs. Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-13
Identity = 63/196 (32.14%), Postives = 91/196 (46.43%), Query Frame = 1


Query: 169 QKPPVESDYGAPSRTKLTGEVSQKLLN---QVEYYFSDLNLATTDHLMRFINKDPDGYVP 228
           QK   ES        K    V Q L +   QV+++F D NL     L   I K  DGYV 
Sbjct: 6   QKTMEESTEKRKEEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVD 65

Query: 229 ISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIA 288
           IS++ SF K+K L      +A  L++SS + +  +G ++RRK+PL E   +E + R V  
Sbjct: 66  ISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYV 125

Query: 289 ENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVE 348
           E LP +  H  + ++F   G+V  I    P    +G                 K  AFVE
Sbjct: 126 ELLPKNVTHSWIERVFGKCGNVVYISI--PHYKSTG---------------DPKGFAFVE 183

Query: 349 YESVVLAEKAVAELND 362
           +E+   A KA+  LN+
Sbjct: 186 FETKEQAAKAIEFLNN 183

[Close]

BLAST of CmaCh11G011660 vs. TrEMBL
Match: A0A061EXJ3_THECC (RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 2.0e-144
Identity = 313/497 (62.98%), Postives = 379/497 (76.26%), Query Frame = 1


Query: 21  SQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPPPPSKQSPRILIPS 80
           S SDP LSRN S SRLNAQAPEFVPTRS+P+   Q  Q     Q      +QS R++IP 
Sbjct: 15  SSSDPQLSRNLSSSRLNAQAPEFVPTRSTPQQQQQQQQQQQQQQQQQQQQQQSHRMMIP- 74

Query: 81  PPPPPAVMHVY-PPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHHYHPHHRHHHHHSHH 140
           PPPPPA++HVY PPPPP + FH+P+ S    PVP+P H+V +P  H+ P   HHHHH HH
Sbjct: 75  PPPPPAMLHVYPPPPPPPAAFHLPVHS----PVPMPPHMVPVP--HHMPMRNHHHHH-HH 134

Query: 141 VPVLYHPHNPQYYADNGGFHDPDNVVQQ---PQKPPVESDYGAP-SRTKLTGEVSQKLLN 200
            P   HPH+ +         + + VV++    ++     D+GA  S+  L+ E + K+LN
Sbjct: 135 PPFQNHPHHHRE-------QEVEAVVKKDHHKEQHKEHKDHGASCSKNGLSEEATLKILN 194

Query: 201 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 260
           QVEYYFSDLNLATTDHLMRFINKDP+GYVPISVVASFKKIKALI +H+QLA +LRNS KL
Sbjct: 195 QVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKL 254

Query: 261 MVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQP 320
           +VSEDGKKVRR+ PL+ESDMEELQSRI++AENLP+DHCHQNLMKIFS+VGSVK IRTCQP
Sbjct: 255 VVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQP 314

Query: 321 QISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLML 380
           Q S  G SS S++AK+DGMH+SNKLHAFVEYESV LAEKAVAELNDEGNWR+ LR+RLML
Sbjct: 315 QPSGGGVSSASRTAKSDGMHFSNKLHAFVEYESVELAEKAVAELNDEGNWRSGLRVRLML 374

Query: 381 TCTSKSTPPRGKKGHNGEMNCKDDD--TSEQPHIEKHVDDLSDQADVHPHE-QREEQGNE 440
              SK T  RGKKGH+GE + ++DD  TSEQ   +K  +D S  +D+H HE   EE  NE
Sbjct: 375 RRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHSHEYPGEEHSNE 434

Query: 441 KDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSI-EQAGTVKQQPPGP 500
           K+ GGQ++ RNR RGKGRGR+QYH+N +N+ GNHVGTPPS++S+ +  +  TV +QPPGP
Sbjct: 435 KE-GGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPGP 494

Query: 501 RMPDGTRGFSMGRGKPV 509
           RMPDGTRGF+MGRGKPV
Sbjct: 495 RMPDGTRGFAMGRGKPV 495

[Close]

BLAST of CmaCh11G011660 vs. TrEMBL
Match: A0A061EQ58_THECC (RNA-binding protein, putative isoform 3 OS=Theobroma cacao GN=TCM_021541 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 5.0e-143
Identity = 313/498 (62.85%), Postives = 379/498 (76.10%), Query Frame = 1


Query: 21  SQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPPPPSKQSPRILIPS 80
           S SDP LSRN S SRLNAQAPEFVPTRS+P+   Q  Q     Q      +QS R++IP 
Sbjct: 15  SSSDPQLSRNLSSSRLNAQAPEFVPTRSTPQQQQQQQQQQQQQQQQQQQQQQSHRMMIP- 74

Query: 81  PPPPPAVMHVY-PPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHHYHPHHRHHHHHSHH 140
           PPPPPA++HVY PPPPP + FH+P+ S    PVP+P H+V +P  H+ P   HHHHH HH
Sbjct: 75  PPPPPAMLHVYPPPPPPPAAFHLPVHS----PVPMPPHMVPVP--HHMPMRNHHHHH-HH 134

Query: 141 VPVLYHPHNPQYYADNGGFHDPDNVVQQ---PQKPPVESDYGAP-SRTKLTGEVSQKLLN 200
            P   HPH+ +         + + VV++    ++     D+GA  S+  L+ E + K+LN
Sbjct: 135 PPFQNHPHHHRE-------QEVEAVVKKDHHKEQHKEHKDHGASCSKNGLSEEATLKILN 194

Query: 201 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 260
           QVEYYFSDLNLATTDHLMRFINKDP+GYVPISVVASFKKIKALI +H+QLA +LRNS KL
Sbjct: 195 QVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQLATVLRNSLKL 254

Query: 261 MVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQP 320
           +VSEDGKKVRR+ PL+ESDMEELQSRI++AENLP+DHCHQNLMKIFS+VGSVK IRTCQP
Sbjct: 255 VVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSSVGSVKTIRTCQP 314

Query: 321 QISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKA-VAELNDEGNWRNALRLRLM 380
           Q S  G SS S++AK+DGMH+SNKLHAFVEYESV LAEKA VAELNDEGNWR+ LR+RLM
Sbjct: 315 QPSGGGVSSASRTAKSDGMHFSNKLHAFVEYESVELAEKAVVAELNDEGNWRSGLRVRLM 374

Query: 381 LTCTSKSTPPRGKKGHNGEMNCKDDD--TSEQPHIEKHVDDLSDQADVHPHE-QREEQGN 440
           L   SK T  RGKKGH+GE + ++DD  TSEQ   +K  +D S  +D+H HE   EE  N
Sbjct: 375 LRRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQSNDKQQEDPSQLSDIHSHEYPGEEHSN 434

Query: 441 EKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSSSI-EQAGTVKQQPPG 500
           EK+ GGQ++ RNR RGKGRGR+QYH+N +N+ GNHVGTPPS++S+ +  +  TV +QPPG
Sbjct: 435 EKE-GGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATSNLVSNEQATVAKQPPG 494

Query: 501 PRMPDGTRGFSMGRGKPV 509
           PRMPDGTRGF+MGRGKPV
Sbjct: 495 PRMPDGTRGFAMGRGKPV 496

[Close]

BLAST of CmaCh11G011660 vs. TrEMBL
Match: B9SSZ3_RICCO (Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 2.1e-141
Identity = 320/532 (60.15%), Postives = 372/532 (69.92%), Query Frame = 1


Query: 5   SSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQ 64
           SS +   S S S    S SDPSLSRN S S+LNAQAPEFVPTR S        Q      
Sbjct: 12  SSETLDQSQSSSSSTSSSSDPSLSRNVSFSKLNAQAPEFVPTRPSSH------QQQQQQP 71

Query: 65  PPPPPSKQSPRI-LIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPN 124
           PPPPP+    R+ +IP PPPPPA+MH+YPPP   SPFHVPI SPVPV     +HV+ + N
Sbjct: 72  PPPPPTASLNRLTVIPPPPPPPAMMHIYPPP---SPFHVPIHSPVPV-----SHVIPVHN 131

Query: 125 HHYHPHHRH-------HHHHSHH-----------------VPVLYHPHNPQYYADNGGFH 184
           HH H HH+H       HHHH HH                 VP+ YH +   +Y   G   
Sbjct: 132 HHPHHHHQHSNNPNHNHHHHQHHNQQYVPVRNHNQNSSQYVPLQYHGNQNHHYVKKGQLE 191

Query: 185 DPDNVVQQPQKPPVESDYGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKD 244
           +     +  +K    SD+ + +      E  QKLLNQVEYYFSDLNLATTDHLMRFINKD
Sbjct: 192 E-----EVEKKEVASSDHMSKNDRNGNDEPMQKLLNQVEYYFSDLNLATTDHLMRFINKD 251

Query: 245 PDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQ 304
           PDGYVPISVVASFKK+KA INS+S LA+ILRNS+KL+VSEDGK+VRR+ PL+E D+EELQ
Sbjct: 252 PDGYVPISVVASFKKVKAAINSNSHLASILRNSAKLVVSEDGKRVRRQNPLTELDVEELQ 311

Query: 305 SRIVIAENLPDDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNK 364
           SRIV+AENLP+DHCHQNLMKIFSAVGSVK IRTC PQ S  G SS S+SAK +GMH+SNK
Sbjct: 312 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCPPQTSGGGASSASRSAKGEGMHFSNK 371

Query: 365 LHAFVEYESVVLAEKAVAELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDD 424
           LHAFVEYESV +AEKAVAELNDE NWR+ LR+RLML   SK T  RGKKGH+G+ + +++
Sbjct: 372 LHAFVEYESVEIAEKAVAELNDEQNWRSGLRVRLMLKRASKPTQARGKKGHDGQGHSEEE 431

Query: 425 D--TSEQPHIEKHVDDLSDQADVHPHEQR-EEQGNEKDGGGQRRVRNRVRGKGRGRSQYH 484
           +  TSEQP  EK ++D S Q D H HE   E+  NEKD G QR+ RNR RGKGRGR QYH
Sbjct: 432 EVSTSEQPPNEKQIEDPSQQYDGHSHEHSGEDHVNEKD-GAQRKGRNRGRGKGRGRGQYH 491

Query: 485 HNHNNNHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPV 509
           H   NN GNHVGTPPS++    EQ    K QPPGPRMPDGT+GF+MGRGKPV
Sbjct: 492 H---NNRGNHVGTPPSNNLIINEQPSMAK-QPPGPRMPDGTKGFAMGRGKPV 519

[Close]

BLAST of CmaCh11G011660 vs. TrEMBL
Match: A0A0A0K7B6_CUCSA (Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 2.6e-139
Identity = 286/346 (82.66%), Postives = 295/346 (85.26%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S R DLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VSI NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP VESDY
Sbjct: 121 VSIQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAF 344
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNK++ F
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKVYLF 320

[Close]

BLAST of CmaCh11G011660 vs. TrEMBL
Match: A0A0D2QCN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.1e-134
Identity = 307/513 (59.84%), Postives = 361/513 (70.37%), Query Frame = 1


Query: 11  PSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPPPPS 70
           P    SP   S SDP L RN S SRLNAQAPEFVPTRS+P+                   
Sbjct: 4   PETLDSPQSSSSSDPQLFRNLSSSRLNAQAPEFVPTRSTPQ------------------- 63

Query: 71  KQSPRILIPSPPPPPAVMHVYPPPPP--GSPFHVPIQSPVPVPVPVPTHVVSIPNHHYHP 130
           +QS R++IP PPPPP +MHVY PPP   G+ FH+P+  P P  VPVP H+ S+ NHH+HP
Sbjct: 64  QQSMRMMIP-PPPPPGIMHVYSPPPAPAGAAFHLPVPIP-PHLVPVPHHM-SMRNHHHHP 123

Query: 131 HHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESDYGAPSRTKLTGE 190
           +  HHH       V    H  Q + D+G                        S+  L+ E
Sbjct: 124 YQNHHHREQEVEAVAKKDH--QEHKDHGSIS---------------------SKNGLSEE 183

Query: 191 VSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANI 250
            + K+LNQVEYYF DLNLATTDHLMRFINKDPDGYVPISVVASFKKIKAL+ +HSQLA +
Sbjct: 184 ATLKILNQVEYYFGDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALVTTHSQLATV 243

Query: 251 LRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSVK 310
           LRNS+KL+VSEDGKKVRR+ PL+ESDMEELQSRI++AENLP+DHCHQNLMKIFSAVGSVK
Sbjct: 244 LRNSAKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSAVGSVK 303

Query: 311 NIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRNA 370
            IRTCQPQ S  G SS S+SAK+DGMH+SNKLHAFVEYE+V LAEKAVAELN+EGNWR+ 
Sbjct: 304 TIRTCQPQPSGGGMSSASRSAKSDGMHFSNKLHAFVEYETVELAEKAVAELNEEGNWRSG 363

Query: 371 LRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDT--SEQPHIEKHVDDLSDQADVHPHEQ- 430
           LR+RLML   SK    R KKGH+GE  C++DD   SE P   K  +D S  +D+H H   
Sbjct: 364 LRVRLMLRHVSKPAHARVKKGHDGEGQCEEDDVCISELPSNGKQQEDPSQLSDIHSHGNP 423

Query: 431 --------REEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHGNHVGTPPSSSSS- 490
                    EE  NEK+  GQ++ RNR RGKGRGR+QYH+NH+++HGNHVGTPPS+SS+ 
Sbjct: 424 ASSNPILIGEEHSNEKE-CGQKKGRNRGRGKGRGRTQYHNNHHSSHGNHVGTPPSASSNW 469

Query: 491 -SIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPV 509
            S EQA T  +QPPGPRMPDGTRGF+MGRGKPV
Sbjct: 484 VSNEQA-TGAKQPPGPRMPDGTRGFAMGRGKPV 469

[Close]

BLAST of CmaCh11G011660 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 416.8 bits (1070), Expect = 2.1e-116
Identity = 293/548 (53.47%), Postives = 360/548 (65.69%), Query Frame = 1


Query: 8   SPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSSSGSQPPP 67
           S S S S +    S SDPSL R+ SLSRLNA APEFVP R++P                 
Sbjct: 21  SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTP----------------- 80

Query: 68  PPSKQSPRILIPSPPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHVVSIPNHH-Y 127
            P  Q PR++IP PPPP  ++H+Y   PP         +PV  PVP+  H+V + NHH +
Sbjct: 81  -PLPQPPRMIIP-PPPPHGMLHMYHHQPP-------FNTPVLGPVPIQPHLVPVQNHHPH 140

Query: 128 HPHHRHHHHHSH----HVPVLYHPHNPQYYADNGGFHDPDNVVQQ---------PQKPPV 187
           H  H+HHHH+ H    +VPV  H    Q     GG  +PD V ++           K   
Sbjct: 141 HRFHQHHHHNRHQNQQYVPVRNHGEYQQR-GGVGGEQEPDLVSKKNDRRDHSKRESKNDQ 200

Query: 188 ESDYGAP----SRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVV 247
            ++ GA     S+T L  +  QK++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VV
Sbjct: 201 VTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVV 260

Query: 248 ASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLP 307
           ASFKKIKA+IN++SQLA +L+NS+KL VSEDGKKVRR  P++ES +EELQSRI++AENLP
Sbjct: 261 ASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLP 320

Query: 308 DDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKS-AKTDGMHYSNKLHAFVEYES 367
           +DHC+QNLMKIFS VGSVKNIRTCQPQ + SG    ++S AK+DG  +SNK+HAFVEYE 
Sbjct: 321 EDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEI 380

Query: 368 VVLAEKAVAELNDEGNWRNALRLRLML---TCTSKSTPPRGKKGHNGEMNCKDDD--TSE 427
           V LAE+AV EL++ GNWR+ L++RLML   T   K    RG+KGH+ ++  ++DD  TSE
Sbjct: 381 VELAERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSE 440

Query: 428 QPHIEKHVDDLSDQADVHPHEQ--REEQGNEKDGGGQRRVRNRVRGKGRGRSQYH----- 487
           Q  IEK  DD S + D H  EQ   E+QGNEK   GQR+ RNR RGKGRGR Q H     
Sbjct: 441 QQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK-AAGQRKGRNRGRGKGRGRGQPHQNQNQ 500

Query: 488 ---HNHNNNH-----GNH-------VGTPPSSS-SSSIEQAGTVKQQPPGPRMPDGTRGF 509
              H+HN NH     GNH       VGT PS++  +++EQ G  KQQPPGPRMPDGTRGF
Sbjct: 501 NNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGF 540

[Close]

BLAST of CmaCh11G011660 vs. TAIR10
Match: AT3G19090.1 (AT3G19090.1 RNA-binding protein)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-57
Identity = 147/340 (43.24%), Postives = 203/340 (59.71%), Query Frame = 1


Query: 172 PVESDYGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVAS 231
           P   +  + S+  L+ ++  K++ QVEY F+D++L   + + + I+KDP+GYVP+S +AS
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAS 186

Query: 232 FKKIKALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDD 291
            KKIKAL ++H  ++  LR+SSKL+VSEDGKKV+R    ++ D EELQ R V+AENLPDD
Sbjct: 187 TKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDD 246

Query: 292 HCHQNLMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVL 351
           H +QNL KIF  VG+VK IR C P        S S   K D +  SNK+HA +EY++ V+
Sbjct: 247 HSYQNLEKIFGVVGNVKAIRICHP------PESNSSRPKGDFL-MSNKIHALIEYDNTVI 306

Query: 352 AEKAVAELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHV 411
           A+KAV +LNDE NWR  LR+RL+L C+ KS     K   N +    DD   E P  E   
Sbjct: 307 ADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL---KNRRNFDGILIDD---ELPSYESG- 366

Query: 412 DDLSDQADVHPHE-QREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHH---NHNNNHGNHV 471
               D   +H  E Q +  G++ + GG   +  + RGKGRGRS   +       + G  +
Sbjct: 367 ---EDSPRLHLTESQLDNDGDDNNVGG---LWGKGRGKGRGRSPRSYAVGGGGRSFGIGL 426

Query: 472 GTPPSSSSSSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKP 508
           G      S    ++ + K    GPRMPDGTRGF+MGRGKP
Sbjct: 427 GVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKP 446

[Close]

BLAST of CmaCh11G011660 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-45
Identity = 125/325 (38.46%), Postives = 191/325 (58.77%), Query Frame = 1


Query: 188 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 247
           E++QK++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + +
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 248 ILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNLMKIFSAVGSV 307
            L+ SS L+VS D KKV+R  PL E  + + +   V+ ENLP+DH ++N+ +IF   GS+
Sbjct: 162 ALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGSI 221

Query: 308 KNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVAELNDEGNWRN 367
           K++  C P    +    + K  K +      +LHAFVEYE+V  AEKA A LN+E +WRN
Sbjct: 222 KSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWRN 281

Query: 368 ALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQRE 427
            LR++L+     K    R  +    E++ K+ DT+ + H ++   + + +   H + +  
Sbjct: 282 GLRVKLLEQAAGKFAQRRPAR---REVD-KEKDTTGRVH-DQTGGEKNKKTREHQNHRLH 341

Query: 428 EQGN--EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNHGNHVGTPPSSSSSSIEQAGT 487
              N  + DGG  ++ +N  +G+  G+GR Q   NH   +G   GT  SSS  +      
Sbjct: 342 HSDNPADDDGGNHQKDKNGNKGRVVGQGRRQ---NHQGGNGIGHGTASSSSHPNYHPV-E 401

Query: 488 VKQQPPGPRMPDGTRGFSMGRGKPV 509
           V ++PPGPRMPDGTRGF+MGRGK +
Sbjct: 402 VSKRPPGPRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of CmaCh11G011660 vs. TAIR10
Match: AT4G32720.1 (AT4G32720.1 La protein 1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-13
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 1


Query: 185 LTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALI----- 244
           LT E ++ +L QVE+YFSD NL   D L + + +  DG V ++++ SF K++  +     
Sbjct: 6   LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDS 65

Query: 245 -------NSHSQLANILRNSSKLMVSEDGKKVRRKQPL--SESDMEELQSRIVIAENLPD 304
                  ++   +A+ LR SS L +S+DGKKV R   L   E  +E+L +R V A     
Sbjct: 66  KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSY 125

Query: 305 DHCHQNLMKIFSAVGSVKNIR 312
           D   +++   FS  G V ++R
Sbjct: 126 DVKREDVESFFSQYGKVNSVR 146

[Close]

BLAST of CmaCh11G011660 vs. TAIR10
Match: AT1G79880.1 (AT1G79880.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 65.9 bits (159), Expect = 9.0e-11
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = 1


Query: 188 EVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHS---- 247
           E ++KLL QVE+YFSD NL T   L R + K  DG V + +V SF +++ L+   +    
Sbjct: 8   ETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINRE 67

Query: 248 --------QLANILRNSSKLMVSEDGKKVRRKQPLS--ESDMEELQSRIVIAENLPDDHC 307
                   ++AN+LR S  L VS +G+++ R   LS  E  +E++  R + A        
Sbjct: 68  DIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYSIK 127

Query: 308 HQNLMKIFSAVGSVKNIRTCQPQISDS----GTSSTSKSAKTD 333
            +++   FS    V ++R   P I+D     GT+    S++ D
Sbjct: 128 MEDVSSFFSQYAKVNSVR-LPPNIADKRRFCGTALVEFSSEQD 169

[Close]

BLAST of CmaCh11G011660 vs. NCBI nr
Match: gi|449444086|ref|XP_004139806.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus])

HSP 1 Score: 789.6 bits (2038), Expect = 3.3e-225
Identity = 438/513 (85.38%), Postives = 451/513 (87.91%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S R DLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VSI NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP VESDY
Sbjct: 121 VSIQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNKLHAFVEYESV LAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLML+C+SKS P RGKKGHNGEMN KD DTSEQP IEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDTSEQPAIEKHVDDLSDQ 420

Query: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNN--HGNHVGTPPSSSS 480
            DVHP EQREE GNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNN  HGNH+GTPP SSS
Sbjct: 421 VDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNHSHGNHLGTPPPSSS 480

Query: 481 SSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPV 509
           ++IEQAGT+KQQPPGPRMPDGTRGFSMGRGKPV
Sbjct: 481 TTIEQAGTMKQQPPGPRMPDGTRGFSMGRGKPV 487

[Close]

BLAST of CmaCh11G011660 vs. NCBI nr
Match: gi|659092715|ref|XP_008447184.1| (PREDICTED: la-related protein 6B isoform X1 [Cucumis melo])

HSP 1 Score: 788.9 bits (2036), Expect = 5.7e-225
Identity = 436/513 (84.99%), Postives = 451/513 (87.91%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VS+ NH YHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNKLHAFVEYESV LAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLML+C+SKS P RGKKGHNGEMN KD D SEQP IEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQ 420

Query: 421 ADVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN--NHGNHVGTPPSSSS 480
            DVHP EQREE GNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNN  NHGNHVGTPP SSS
Sbjct: 421 VDVHPPEQREEHGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNIHNHGNHVGTPPPSSS 480

Query: 481 SSIEQAGTVKQQPPGPRMPDGTRGFSMGRGKPV 509
           ++IEQAGT+KQQPPGPRMPDGTRGF+MGRGKPV
Sbjct: 481 TTIEQAGTMKQQPPGPRMPDGTRGFAMGRGKPV 487

[Close]

BLAST of CmaCh11G011660 vs. NCBI nr
Match: gi|659092721|ref|XP_008447187.1| (PREDICTED: la-related protein 6B isoform X4 [Cucumis melo])

HSP 1 Score: 645.2 bits (1663), Expect = 1.0e-181
Identity = 359/428 (83.88%), Postives = 370/428 (86.45%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VS+ NH YHPHHRHHHH SHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHRHHHH-SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNKLHAFVEYESV LAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLML+C+SKS P RGKKGHNGEMN KD D SEQP IEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQ 402

Query: 421 ADVHPHEQ 426
            DVHP EQ
Sbjct: 421 VDVHPPEQ 402

[Close]

BLAST of CmaCh11G011660 vs. NCBI nr
Match: gi|659092719|ref|XP_008447186.1| (PREDICTED: la-related protein 6B isoform X3 [Cucumis melo])

HSP 1 Score: 645.2 bits (1663), Expect = 1.0e-181
Identity = 359/428 (83.88%), Postives = 370/428 (86.45%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VS+ NH YHPHHRHHHH SHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHRHHHH-SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNKLHAFVEYESV LAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLML+C+SKS P RGKKGHNGEMN KD D SEQP IEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQ 402

Query: 421 ADVHPHEQ 426
            DVHP EQ
Sbjct: 421 VDVHPPEQ 402

[Close]

BLAST of CmaCh11G011660 vs. NCBI nr
Match: gi|659092717|ref|XP_008447185.1| (PREDICTED: la-related protein 6B isoform X2 [Cucumis melo])

HSP 1 Score: 645.2 bits (1663), Expect = 1.0e-181
Identity = 359/428 (83.88%), Postives = 370/428 (86.45%), Query Frame = 1


Query: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDLQPPQSS 60
           MA HSSSS             QSD SLSRNSSLSRLNAQAPEFVPTR S RPDLQP    
Sbjct: 1   MAQHSSSS-------------QSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPL--- 60

Query: 61  SGSQPPPPPSKQSPRILIPSPPPPP--AVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120
                 PPP KQSPRILIPSPPPPP  A+MH YPPPPPGSPFHVPIQ+    PVPVPTHV
Sbjct: 61  ------PPPPKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQT---TPVPVPTHV 120

Query: 121 VSIPNHHYHPHHRHHHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQP-QKPPVESDY 180
           VS+ NH YHPHHRHHHH SHHVPVLYHPHNPQYYADNGGFHDPD  V QP QKP +ESDY
Sbjct: 121 VSLQNHPYHPHHRHHHH-SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDY 180

Query: 181 GAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKA 240
            APSR+KLT EVSQKLLNQVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKA
Sbjct: 181 AAPSRSKLTDEVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKA 240

Query: 241 LINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQNL 300
           LINSH QLANILRNSSKL+VSEDGKKV+RKQP SESDMEELQSRIVIAENLP+DHCHQNL
Sbjct: 241 LINSHFQLANILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNL 300

Query: 301 MKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAVA 360
           MKIFSAVGSVKNIRTCQPQISDSG SSTSKSAK DGMHYSNKLHAFVEYESV LAEKAVA
Sbjct: 301 MKIFSAVGSVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVA 360

Query: 361 ELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQ 420
           ELNDEGNWRNALRLRLML+C+SKS P RGKKGHNGEMN KD D SEQP IEKHVDDLSDQ
Sbjct: 361 ELNDEGNWRNALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQ 402

Query: 421 ADVHPHEQ 426
            DVHP EQ
Sbjct: 421 VDVHPPEQ 402

The following BLAST results are available for this feature:

BLAST of CmaCh11G011660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP6B_ARATH	3.7e-115	53.47	La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2	[more]
LRP6C_ARATH	3.0e-56	43.24	La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1	[more]
LRP6A_ARATH	2.0e-44	38.46	La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1	[more]
LARP7_XENTR	2.4e-13	25.56	La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1	[more]
LARP7_RAT	4.1e-13	32.14	La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2	[more]

BLAST of CmaCh11G011660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EXJ3_THECC	2.0e-144	62.98	RNA-binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]
A0A061EQ58_THECC	5.0e-143	62.85	RNA-binding protein, putative isoform 3 OS=Theobroma cacao GN=TCM_021541 PE=4 SV...	[more]
B9SSZ3_RICCO	2.1e-141	60.15	Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1269060 PE=4 SV...	[more]
A0A0A0K7B6_CUCSA	2.6e-139	82.66	Lupus la ribonucleoprotein OS=Cucumis sativus GN=Csa_7G224890 PE=4 SV=1	[more]
A0A0D2QCN7_GOSRA	1.1e-134	59.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G268200 PE=4 SV=1	[more]

BLAST of CmaCh11G011660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43970.1	2.1e-116	53.47	RNA-binding protein	[more]
AT3G19090.1	1.7e-57	43.24	RNA-binding protein	[more]
AT5G46250.1	1.1e-45	38.46	RNA-binding protein	[more]
AT4G32720.1	3.3e-13	33.33	La protein 1	[more]
AT1G79880.1	9.0e-11	31.29	RNA recognition motif (RRM)-containing protein	[more]

BLAST of CmaCh11G011660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444086\|ref\|XP_004139806.1\|	3.3e-225	85.38	PREDICTED: la-related protein 6B isoform X1 [Cucumis sativus]	[more]
gi\|659092715\|ref\|XP_008447184.1\|	5.7e-225	84.99	PREDICTED: la-related protein 6B isoform X1 [Cucumis melo]	[more]
gi\|659092721\|ref\|XP_008447187.1\|	1.0e-181	83.88	PREDICTED: la-related protein 6B isoform X4 [Cucumis melo]	[more]
gi\|659092719\|ref\|XP_008447186.1\|	1.0e-181	83.88	PREDICTED: la-related protein 6B isoform X3 [Cucumis melo]	[more]
gi\|659092717\|ref\|XP_008447185.1\|	1.0e-181	83.88	PREDICTED: la-related protein 6B isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002344	Lupus_La
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0030529	intracellular ribonucleoprotein complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011660.1	CmaCh11G011660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 196..213 score: 2.4E-9coord: 222..237 score: 2.4E-9coord: 253..266 score: 2.4E-9coord: 275..291 score: 2.
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 194..251 score: 3.3
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 187..267 score: 1.2
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 183..274 score: 25
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 188..270 score: 4.4
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 187..277 score: 2.27
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 272..372 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 245..370 score: 2.0
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 74..136 score: 2.7E-221coord: 24..56 score: 2.7E-221coord: 175..508 score: 2.7E
None	No IPR available	PANTHER	PTHR22792:SF52	LA-RELATED PROTEIN 6B	coord: 74..136 score: 2.7E-221coord: 175..508 score: 2.7E-221coord: 24..56 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G011660	CmoCh11G012090	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G011660	Cp4.1LG04g00260	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G011660	Carg26983	Silver-seed gourd	carcmaB1143

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G011660	Watermelon (Charleston Gray)	cmawcgB117
CmaCh11G011660	Watermelon (97103) v1	cmawmB104