CmoCh11G012050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall subunit rib
LocationCmo_Chr11 : 7109045 .. 7110470 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATAAATAGTAAGATAGTAATCCCGTGTAATGTCGTTTGGACGAATATGTTAGCAATGTGTGTTTGTCCGCATCTACTTTCATCCTCTTGAATGTCTCATATTTTGTTACCACAATCCATGTCACCTTACGCTATGTTATCATCCCTAGGCCATCATGATCTTACATGTGATGTGCCCCATGTTTGCTAAAAGTTATTTAGTTATAGGTGAAGATGAGACATGCCAGATAGTTCCTAGTATTTTACGTCATGGTTTCACTATTATACTCGCATGCATTTGTATCTAATTTATTCCCTGTTTGCAAGTACGTTTACTGACAACAAGTGTCCTCACTCTTGGATGATAATTTTGCCATTTAATTTAAGTTAGACCAGATTGCCTTTCCAATTTGAACAAGGGAGAGAATGAATTTTCAGGAATTCAGACATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCCGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTTAACCGGTGGACCTTCGATGACGTCCATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACACGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTCGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTTACGACAGGAGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTATGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTCGCAAAAGCTAATCGTTGAGGTTATTTCTCAGTGTTCGTTCTACGTTGGCACAGCAAGAGTTTTTCTCCTTTTCTTGTGTTTACATTCTTCTAATGAAAACACTATAGCCTAACGTGTTCTGTTTTGTTTTTTTTTTTTTTATGGTTGTCGCGACAATTCATCTCTATTTGGTTTTAGACTTGAAAGTTTTGATATCAATGCCCCTTTCATTAGAACAAGCAAATAAATGCATTGTGTTTTCGTAAAAGCATTGTAACTTTATTTCCATTTATCTATCATTAAGAACTACTCAATTGGATGATATCAATACCCACAGACGTTTTAG

mRNA sequence

ATGTGGATAAATAGTGAAGATGAGACATGCCAGATAGTTCCTAGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTTAACCGGTGGACCTTCGATGACGTCCATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACACGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTCGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTTACGACAGGAGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTATGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTCGCAAAAGCTAATCGTTGAGGTTATTTCTCAGTGTTCGTTCTACGTTGGCACAGCAAGAGTTTTTCTCCTTTTCTTGTGTTTACATTCTTCTAATGAAAACACTATAGCCTAACGTGTTCTGTTTTGTTTTTTTTTTTTTTATGGTTGTCGCGACAATTCATCTCTATTTGGTTTTAGACTTGAAAGTTTTGATATCAATGCCCCTTTCATTAGAACAAGCAAATAAATGCATTGTGTTTTCGTAAAAGCATTGTAACTTTATTTCCATTTATCTATCATTAAGAACTACTCAATTGGATGATATCAATACCCACAGACGTTTTAG

Coding sequence (CDS)

ATGTGGATAAATAGTGAAGATGAGACATGCCAGATAGTTCCTAGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTTAACCGGTGGACCTTCGATGACGTCCATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAGCTTATGGCTGTCAGGATTATTAAACACGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTCGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGCGTTAACCAGGCAATCTATCTTCTTACGACAGGAGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTATGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTCGCAAAAGCTAATCGTTGA
Homology
[Close]
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.1e-96
Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = 1 

Query: 18  AVEVDV-VNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 77
           + E+D  + Q+LT   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 78  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 137
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 138 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 197
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 198 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.0e-96
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 1 

Query: 34  DVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 93
           +VKLFNRW+FDDV ++D+SL DYIGV PSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 94  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 153
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 154 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 213
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 214 EVERVAKANR 224
           E+ERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 347.4 bits (890), Expect = 1.1e-94
Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 18  AVEVDV-VNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 77
           A +VD  + Q LT   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 78  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 137
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 138 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 197
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 198 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 306.6 bits (784), Expect = 2.2e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 34  DVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 93
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 94  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 153
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 154 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 213
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 214 EVERVAKANR 224
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 306.6 bits (784), Expect = 2.2e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 34  DVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 93
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 94  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 153
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 154 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 213
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 214 EVERVAKANR 224
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmoCh11G012050 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.0e-106
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 4.5e-106
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVE+DVVNQELTQ HHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 5.8e-106
Identity = 199/208 (95.67%), Postives = 204/208 (98.08%), Query Frame = 1 

Query: 16  TMAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRY 75
           TMAVEVDVVNQELT PHHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRY
Sbjct: 77  TMAVEVDVVNQELTLPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRY 136

Query: 76  SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAV 135
           SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLN +QVIVDAV
Sbjct: 137 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNTVQVIVDAV 196

Query: 136 VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 195
           VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE
Sbjct: 197 VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 256

Query: 196 LINAAKGSSNSYAIKKKDEVERVAKANR 224
           LINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 257 LINAAKGSSNSYAIKKKDEIERVAKANR 284

[Close]
BLAST of CmoCh11G012050 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.4e-104
Identity = 197/207 (95.17%), Postives = 202/207 (97.58%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVEVDV +QELTQ HHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPIVER TNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERRTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. TrEMBL
Match: W9RQK6_9ROSA (40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.3e-99
Identity = 186/202 (92.08%), Postives = 195/202 (96.53%), Query Frame = 1 

Query: 22  DVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFR 81
           DV  Q+ +QPH DVKLFNRW+FDDV VND+SL DYIGV P+KHATYVPHTAGRYSVKRFR
Sbjct: 3   DVSVQDPSQPHFDVKLFNRWSFDDVQVNDISLADYIGVVPAKHATYVPHTAGRYSVKRFR 62

Query: 82  KAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPR 141
           KAQCPIVERLTNSLMMHGRNNGKKLMAVRI++HAMEIIHLLTDLNPIQVIVDAVVNSGPR
Sbjct: 63  KAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHAMEIIHLLTDLNPIQVIVDAVVNSGPR 122

Query: 142 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAK 201
           EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIKTIAECLADELINAAK
Sbjct: 123 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAK 182

Query: 202 GSSNSYAIKKKDEVERVAKANR 224
           GSSNSYAIKKKDE+ERVAKANR
Sbjct: 183 GSSNSYAIKKKDEIERVAKANR 204

[Close]
BLAST of CmoCh11G012050 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 353.2 bits (905), Expect = 1.2e-97
Identity = 181/207 (87.44%), Postives = 196/207 (94.69%), Query Frame = 1 

Query: 18  AVEVDV-VNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 77
           + E+D  + Q+LT   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 78  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 137
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 138 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 197
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 198 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A)

HSP 1 Score: 347.4 bits (890), Expect = 6.4e-96
Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 18  AVEVDV-VNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 77
           A +VD  + Q LT   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 78  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 137
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 138 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 197
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 198 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1 

Query: 90  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 149
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 150 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 209
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 210 AIKKKDEVERVAKANR 224
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of CmoCh11G012050 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1 

Query: 90  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 149
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 150 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 209
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 210 AIKKKDEVERVAKANR 224
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of CmoCh11G012050 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 8.9e-108
Identity = 203/208 (97.60%), Postives = 206/208 (99.04%), Query Frame = 1 

Query: 16  TMAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRY 75
           TMAVEVDVVNQELTQPHHDVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPHTAGRY
Sbjct: 46  TMAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRY 105

Query: 76  SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAV 135
           SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAV
Sbjct: 106 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAV 165

Query: 136 VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 195
           VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE
Sbjct: 166 VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 225

Query: 196 LINAAKGSSNSYAIKKKDEVERVAKANR 224
           LINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 226 LINAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]
BLAST of CmoCh11G012050 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.4e-107
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.4e-107
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 73

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 133

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]
BLAST of CmoCh11G012050 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 2.9e-106
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmoCh11G012050 vs. NCBI nr
Match: gi|778725851|ref|XP_011659014.1| (PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 6.4e-106
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 17  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVHVNDMSLGDYIGVAPSKHATYVPHTAGRYS 76
           MAVE+DVVNQELTQ HHDVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 73

Query: 77  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 136
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 133

Query: 137 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 196
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 197 INAAKGSSNSYAIKKKDEVERVAKANR 224
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

The following BLAST results are available for this feature:
BLAST of CmoCh11G012050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS51_ARATH2.1e-9687.4440S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1[more]
RS5_CICAR6.0e-9694.2140S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1[more]
RS52_ARATH1.1e-9486.4740S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2[more]
RS5_BOVIN2.2e-8280.0040S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3[more]
RS5_HUMAN2.2e-8280.0040S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4[more]
BLAST of CmoCh11G012050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSZ1_CUCSA2.0e-10696.14Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1[more]
A0A0A0K5K0_CUCSA4.5e-10695.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1[more]
A0A0A0LRZ5_CUCSA5.8e-10695.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1[more]
A0A0A0LVI4_CUCSA1.4e-10495.1740S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1[more]
W9RQK6_9ROSA5.3e-9992.0840S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1[more]
BLAST of CmoCh11G012050 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37270.11.2e-9787.44 ribosomal protein 5B[more]
AT3G11940.16.4e-9686.47 ribosomal protein 5A[more]
ATCG01240.12.9e-0835.29ATCG01240.1 ribosomal protein S7[more]
ATCG00900.12.9e-0835.29ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
BLAST of CmoCh11G012050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114009|ref|XP_008456864.1|8.9e-10897.60PREDICTED: 40S ribosomal protein S5-like [Cucumis melo][more]
gi|659092671|ref|XP_008447165.1|4.4e-10797.10PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo][more]
gi|659092669|ref|XP_008447164.1|4.4e-10797.10PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo][more]
gi|449445316|ref|XP_004140419.1|2.9e-10696.14PREDICTED: 40S ribosomal protein S5 [Cucumis sativus][more]
gi|778725851|ref|XP_011659014.1|6.4e-10695.65PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000235Ribosomal_S5/S7
IPR005716Ribosomal_S5/S7_euk/arc
IPR020606Ribosomal_S7_CS
IPR023798Ribosomal_S7_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012050.1CmoCh11G012050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 5..223
score: 3.6
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..223
score: 1.4E
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMsTIGR01028TIGR01028coord: 35..223
score: 8.9
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 89..115
scor
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 35..223
score: 4.2
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 78..223
score: 1.8
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 36..223
score: 2.22
NoneNo IPR availablePANTHERPTHR11205:SF2440S RIBOSOMAL PROTEIN S5-1-RELATEDcoord: 1..223
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G012050CmaCh11G011630Cucurbita maxima (Rimu)cmacmoB112
CmoCh11G012050Cp4.1LG04g00270Cucurbita pepo (Zucchini)cmocpeB127
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012050Silver-seed gourdcarcmoB1113