CmaCh11G011630 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G011630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal protein S5 component of cytosolic 80S ribosome and 40S small subunit
LocationCma_Chr11 : 6736210 .. 6736896 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

mRNA sequence

ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Coding sequence (CDS)

ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Protein sequence

MPYVCTQLVLTFSVFLCSLGTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
Homology
[Close]
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.3e-97
Identity = 182/207 (87.92%), Postives = 197/207 (95.17%), Query Frame = 1 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           + E+D  + Q+LT   N+VKLFNRW+FDDV+V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.1e-96
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 1 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           +VKLFNRW+FDDV ++D+SL DYIGV PSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 219 EVERVAKANR 229
           E+ERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.8e-95
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           A +VD  + Q LT   N+VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 306.2 bits (783), Expect = 3.0e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 219 EVERVAKANR 229
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 306.2 bits (783), Expect = 3.0e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 219 EVERVAKANR 229
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmaCh11G011630 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 6.0e-106
Identity = 199/209 (95.22%), Postives = 205/209 (98.09%), Query Frame = 1 

Query: 20  GTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGR 79
           GTMAVEVDVVNQELT PH+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGR
Sbjct: 76  GTMAVEVDVVNQELTLPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGR 135

Query: 80  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 139
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLN +QVIVDA
Sbjct: 136 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNTVQVIVDA 195

Query: 140 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 199
           VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD
Sbjct: 196 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 255

Query: 200 ELINAAKGSSNSYAIKKKDEVERVAKANR 229
           ELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 256 ELINAAKGSSNSYAIKKKDEIERVAKANR 284

[Close]
BLAST of CmaCh11G011630 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.0e-105
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 22  MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 81
           MAVEVDVVNQEL QPH+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 82  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 141
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 142 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 201
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 202 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.3e-105
Identity = 197/207 (95.17%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 22  MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 81
           MAVE+DVVNQELTQ H+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 82  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 141
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 142 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 201
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 202 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 7.3e-104
Identity = 196/207 (94.69%), Postives = 202/207 (97.58%), Query Frame = 1 

Query: 22  MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 81
           MAVEVDV +QELTQ H+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 82  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 141
           VKRFRKAQCPIVER TNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERRTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 142 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 201
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 202 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TrEMBL
Match: B9T7U3_RICCO (40S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_0408940 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.4e-99
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1 

Query: 22  MAVEV--DVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGR 81
           MA EV   +V+ E  QP+N+VKLFNRWTF+DV VND+SL DYIG+ P+KHATYVPHTAGR
Sbjct: 1   MAAEVAAPLVSSEPMQPYNEVKLFNRWTFEDVQVNDISLSDYIGIQPAKHATYVPHTAGR 60

Query: 82  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 141
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDLNPIQVIVDA
Sbjct: 61  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDA 120

Query: 142 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 201
           VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD
Sbjct: 121 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 180

Query: 202 ELINAAKGSSNSYAIKKKDEVERVAKANR 229
           ELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 ELINAAKGSSNSYAIKKKDEIERVAKANR 209

[Close]
BLAST of CmaCh11G011630 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 355.9 bits (912), Expect = 1.8e-98
Identity = 182/207 (87.92%), Postives = 197/207 (95.17%), Query Frame = 1 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           + E+D  + Q+LT   N+VKLFNRW+FDDV+V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A)

HSP 1 Score: 350.1 bits (897), Expect = 1.0e-96
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           A +VD  + Q LT   N+VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1 

Query: 95  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 154
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 155 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 214
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 215 AIKKKDEVERVAKANR 229
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of CmaCh11G011630 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 1 

Query: 95  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 154
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 155 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 214
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 215 AIKKKDEVERVAKANR 229
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of CmaCh11G011630 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 9.1e-108
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 1 

Query: 20  GTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGR 79
           GTMAVEVDVVNQELTQPH+DVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPHTAGR
Sbjct: 45  GTMAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGR 104

Query: 80  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 139
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA
Sbjct: 105 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 164

Query: 140 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 199
           VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD
Sbjct: 165 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 224

Query: 200 ELINAAKGSSNSYAIKKKDEVERVAKANR 229
           ELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 225 ELINAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]
BLAST of CmaCh11G011630 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 203/213 (95.31%), Postives = 208/213 (97.65%), Query Frame = 1 

Query: 16  LCSLGTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPH 75
           L  LG MAVE+DVVNQELTQPH+DVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPH
Sbjct: 8   LSHLGIMAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPH 67

Query: 76  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQV 135
           TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQV
Sbjct: 68  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQV 127

Query: 136 IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE 195
           IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE
Sbjct: 128 IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE 187

Query: 196 CLADELINAAKGSSNSYAIKKKDEVERVAKANR 229
           CLADELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 188 CLADELINAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]
BLAST of CmaCh11G011630 vs. NCBI nr
Match: gi|778725851|ref|XP_011659014.1| (PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.3e-106
Identity = 200/213 (93.90%), Postives = 207/213 (97.18%), Query Frame = 1 

Query: 16  LCSLGTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPH 75
           L  LG MAVE+DVVNQELTQ H+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPH
Sbjct: 8   LSHLGIMAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPH 67

Query: 76  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQV 135
           TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QV
Sbjct: 68  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQV 127

Query: 136 IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE 195
           IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE
Sbjct: 128 IVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAE 187

Query: 196 CLADELINAAKGSSNSYAIKKKDEVERVAKANR 229
           CLADELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 188 CLADELINAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]
BLAST of CmaCh11G011630 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.3e-106
Identity = 200/207 (96.62%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 22  MAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 81
           MAVE+DVVNQELTQPH+DVKLFNRWTFDDV VND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 82  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 141
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 142 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 201
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 202 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. NCBI nr
Match: gi|700207682|gb|KGN62801.1| (hypothetical protein Csa_2G373440 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 8.6e-106
Identity = 199/209 (95.22%), Postives = 205/209 (98.09%), Query Frame = 1 

Query: 20  GTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGR 79
           GTMAVEVDVVNQELT PH+DVKLFNRWTFDDV VND+SL DY+GVAP+KHATYVPHTAGR
Sbjct: 76  GTMAVEVDVVNQELTLPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGR 135

Query: 80  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDA 139
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLN +QVIVDA
Sbjct: 136 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNTVQVIVDA 195

Query: 140 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 199
           VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD
Sbjct: 196 VVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 255

Query: 200 ELINAAKGSSNSYAIKKKDEVERVAKANR 229
           ELINAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 256 ELINAAKGSSNSYAIKKKDEIERVAKANR 284

The following BLAST results are available for this feature:
BLAST of CmaCh11G011630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS51_ARATH3.3e-9787.9240S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1[more]
RS5_CICAR6.1e-9694.2140S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1[more]
RS52_ARATH1.8e-9586.9640S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2[more]
RS5_BOVIN3.0e-8280.0040S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3[more]
RS5_HUMAN3.0e-8280.0040S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4[more]
BLAST of CmaCh11G011630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRZ5_CUCSA6.0e-10695.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1[more]
A0A0A0KSZ1_CUCSA1.0e-10595.65Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1[more]
A0A0A0K5K0_CUCSA2.3e-10595.17Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1[more]
A0A0A0LVI4_CUCSA7.3e-10494.6940S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1[more]
B9T7U3_RICCO2.4e-9990.4340S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_0408940 PE=3 SV=1[more]
BLAST of CmaCh11G011630 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37270.11.8e-9887.92 ribosomal protein 5B[more]
AT3G11940.11.0e-9686.96 ribosomal protein 5A[more]
ATCG01240.13.0e-0835.29ATCG01240.1 ribosomal protein S7[more]
ATCG00900.13.0e-0835.29ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
BLAST of CmaCh11G011630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114009|ref|XP_008456864.1|9.1e-10897.13PREDICTED: 40S ribosomal protein S5-like [Cucumis melo][more]
gi|659092669|ref|XP_008447164.1|1.6e-10795.31PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo][more]
gi|778725851|ref|XP_011659014.1|2.3e-10693.90PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus][more]
gi|659092671|ref|XP_008447165.1|2.3e-10696.62PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo][more]
gi|700207682|gb|KGN62801.1|8.6e-10695.22hypothetical protein Csa_2G373440 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000235Ribosomal_S5/S7
IPR005716Ribosomal_S5/S7_euk/arc
IPR020606Ribosomal_S7_CS
IPR023798Ribosomal_S7_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G011630.1CmaCh11G011630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 10..228
score: 1.2
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 26..228
score: 3.8E
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMsTIGR01028TIGR01028coord: 40..228
score: 9.1
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 94..120
scor
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 40..228
score: 5.7
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 83..228
score: 1.9
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 41..228
score: 2.35
NoneNo IPR availablePANTHERPTHR11205:SF2440S RIBOSOMAL PROTEIN S5-1-RELATEDcoord: 26..228
score: 3.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G011630CmoCh11G012050Cucurbita moschata (Rifu)cmacmoB112
CmaCh11G011630Cp4.1LG04g00270Cucurbita pepo (Zucchini)cmacpeB147
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G011630Silver-seed gourdcarcmaB1143
CmaCh11G011630Watermelon (Charleston Gray)cmawcgB117
CmaCh11G011630Watermelon (97103) v1cmawmB104