CmoCh11G009010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G009010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Cmo_Chr11 : 4620186 .. 4623831 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCGAACCCCGGCCAGTTCTTTTGAGTTTCACTTTCGACGGGAGCATAGCTGTGGCTGAATCGCTTCCAGGTTCCTCCAGAAGTTTGATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCCACGATCCATGTATATCGATTGACCCATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGGTATGCCCTCTTTTTGCTCTCTCAATCTATCTGTCTTGTCCTGCCTTCCATGACATACATTGAATTTCTAGGGAGATAAAGTTGAAAGGTTCTCTCTGAAGCTCCATCGGCGAAACGTGAATTCGATCAATATATTGCTGTAACGTGTTGAGTTCATTAAGAATTTTGTTGTTTGGATGCATTACTTATATAGGAATAATCTTGAATTTTGTCGAACTGTGGCATTTTCGGATTGGATATGCTTTTCTTCGATTTTTATTCACCGTAGGAAAATTTCCCAAGTATTTGATGATTGCATTTTGAAGAGGTTTAGTTATGGTGAACGTTGTGGAAGTATTGATGGAGAATATAGATAGCCCACTATAGCTTGCAAACCATCATTTAGGTCAAATAGAATTAGGAACACTTGCTGTGCTAGCCTTAGGCAGCCTATGGACTTGCGAAATGGAGAAAAGTTTCATACATCGAGATCAGGGTAGGAATAGTTCCCTCAACTGGTTGGGTGTGTAGGAAATATAATCTTAAAGGACGATTTCAAAAAAGTAGGCTGAATCCCAACAGGTTAGTTGAGACTATGGCCGTGAACGACGATATTGCCGCTTGTATTGACTGATATAGCCAATAGCATAAGCCACCAATGATGATTTCAAGTTCGAAGTACTCAAATTGCCACTCAATGTCTTGAATTATGCCTCGAGGATAGGGTGGCTCTTTGGGTCGGGTAGTGATAGACTCCTATTAAATATGTATAAAAGAGAAGGCATATGAGGAAATAGAGTGGGGAAAAGGAAGTTGTTACAAGTTTGTTAGAAATGGTCCAAAGGAAGCTTTAAATGAGTGGGCAGTGAGTTTATGTATGTAGAGTGCAGGAGAGAGCTGAAGGGATATCTTTTTGCGTAATGATTTTGTGTGAGATTCTTGTGGGAGAGAGGGGAAGCTCCAGAATTCTTCCCTTAACATTGTATGCTTATTGATAAATATGCCCACTTCTTATAAGCCTCAGTTAGCTTGGGATTAGTCTTGAAGATAGCTCATTATACGTCCTACAGATCAGTTGAATGCACGGAGTTGGATGCACGGAGCTTAAAGCTTTGTAACGTCTTATTAGAAAAACAGTATTGGCAATATTCCTACTTGGAGCCTAATGCATTTGACGAAGAATTTTTGCAAAGCCAAAACCAAAAATAACTACTAGATCTTTGGGAGAAGTGGGGGATCAACTCCATTAGATATATATAGTTATTCAAGAGTTAATTTGTCATTAAGATTTTCTTTGGAAGCCAAGATCCAAAAATGAGGAGGTAAAATTCCATCATTGATGAATGAGGACCTCCTTTGAGGAGAGGAAGCAGAGTCTGGAGAATAGAGACGAAAGAGGTGAATCAACTTTCCTAATGTTCTCCAAAGTAGAGTATTCTTGCCATTATGGACACGAACTCTATTTCTGTTAGCTAAATTAGATTTAGGCTCCAATATCTGATCTGAAACATATGTGCTAGCAATAATCATCCTCTCAATAGAGGATTTTTTGTTTAAAAATCTCCATGTCCAGAAACCAAGAAAGAGAAGTTTCTCTCTTTTAGATTGCCAAGAGTCCAAGACCAAGACCACCAAACTGCATAGGGAGCTTCATATTATTGCCCTTTTTCAGACTGCAAGTTTCCTAACTATTGGATGTCATAGGATCAGGAGGACGATTACTTTTGGCAGAGAAAAACTGGAATATGCTAGCCTTTTTTCATATACAACGTACACTATAATAGTGGTCCTTTGTTTGTCTGGAGGCGAGGCTTGAATTCCATGAGTGATATATATTAGAAACAGAAATTCTAGTATTATATTATTCATTGGGGATGAAATCCTCCATGACATAAGATGAATTACATAACTAGGCGCGTATGTCTCCTTTAGTGATAGTAAAGTACTTTAACAAATAAAATCCACTTATGTACCTTTAAGTATAATAAATAAATAAAATCTACTGATGCTTACTTTATTGCCCTTTTGTGTTGAAGAGATATTGAACGACAAGTTTGAAAATATTAGATGGTCGGAAACAATTTGGTGTTTGTTTTTAGATTTCTTTTAAAATGATGCATGCCTAGGACCTTATATCCTAAAAAATTTACTCTGTTCTTGTCTTGGTAATCTACTCTATTGTCTTGGAGAATAACATTCTCCAACTCTTGTAGTTTGTTACTTTACAAAGGCATCATTTATATTTTTTTTAAAATTGCCCCTTCTTAAGTTGATAGAAACCTTTGCTTTTACACCCATTGATTGCTTTGTTGACCCTTTCTTGCCCCTTCAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGGTATGTGCAAGAGTGTAAAATGATCGAGGAAATGGCTGATACGGTAGCTTCTTTGTTGTCTTTTTATACTTACAGTTGCATTTAATAGGTTTTTAAACTAAAAAAAATCCATTAGGTATTGCATCGAGTTGGTCCGTGAACTTTAAAAGTGCCTAATAAGATTCTAAACTTTCTTTTAGATACAAAATATACATTCTACTATTAGATACGAAGTCAAAAAGTTAGGGGGTTTAGCAACACTAAATCCAATTGTGTGTTTATTAAGTTTGTGAGTCGCTTTTAAACTTGAGAAATCTCCTTGTCTGTGAAAGGTCGGAAACAAACTTGTAGTTTAACAACAGGTTGGGATCATGTAATCGCTCGATAGGATACTCGCCCGTCTACTATGTTCGGTGATCCTTTTGCTGATTGATACAGTCTCAAAGCATTGCTCATTTTTGCCATATTTGTACTTTTTATGAAATTTTACATTTTTAATACAATATAACTTTTCAATTTGGG

mRNA sequence

CATTCGAACCCCGGCCAGTTCTTTTGAGTTTCACTTTCGACGGGAGCATAGCTGTGGCTGAATCGCTTCCAGGTTCCTCCAGAAGTTTGATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCCACGATCCATGTATATCGATTGACCCATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGGTATGTGCAAGAGTGTAAAATGATCGAGGAAATGGCTGATACGGTAGCTTCTTTGTTGTCTTTTTATACTTACAGTTGCATTTAATAGGTTTTTAAACTAAAAAAAATCCATTAGGTATTGCATCGAGTTGGTCCGTGAACTTTAAAAGTGCCTAATAAGATTCTAAACTTTCTTTTAGATACAAAATATACATTCTACTATTAGATACGAAGTCAAAAAGTTAGGGGGTTTAGCAACACTAAATCCAATTGTGTGTTTATTAAGTTTGTGAGTCGCTTTTAAACTTGAGAAATCTCCTTGTCTGTGAAAGGTCGGAAACAAACTTGTAGTTTAACAACAGGTTGGGATCATGTAATCGCTCGATAGGATACTCGCCCGTCTACTATGTTCGGTGATCCTTTTGCTGATTGATACAGTCTCAAAGCATTGCTCATTTTTGCCATATTTGTACTTTTTATGAAATTTTACATTTTTAATACAATATAACTTTTCAATTTGGG

Coding sequence (CDS)

ATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCCACGATCCATGTATATCGATTGACCCATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGGTATGTGCAAGAGTGTAAAATGA

Homology

[Close]

BLAST of CmoCh11G009010 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.3e-82
Identity = 147/186 (79.03%), Postives = 167/186 (89.78%), Query Frame = 1


Query: 63  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 122
           M KEGLI  KELKR+Q+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNA 182
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLK E VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 183 MPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPED 242
           +P EAM +Y EMR+SPDRPLSLPFRVILKGLVPYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 243 LFEEDE 249
           + E+ +
Sbjct: 181 ICEDSD 186

[Close]

BLAST of CmoCh11G009010 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-51
Identity = 95/210 (45.24%), Postives = 148/210 (70.48%), Query Frame = 1


Query: 35  RPQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSR 94
           +P    + RF  G    P   +WR KK +GKE L V+  LKR++ +  +LD+FI +HV R
Sbjct: 48  KPFTVFVSRFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFR 107

Query: 95  LLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQ 154
           LLK D++AV+ EL+RQ +  L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   
Sbjct: 108 LLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMA 167

Query: 155 VWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLV 214
           +WE +K E +  D  T+ +++R +L +  P++AM++Y +M +SPD P  LPFRV+LKGL+
Sbjct: 168 LWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLL 227

Query: 215 PYPELREQVKDDFLELFPDMIVYDPPEDLF 245
           P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 228 PHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

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BLAST of CmoCh11G009010 vs. TrEMBL
Match: G7I945_MEDTR (PPR containing plant-like protein OS=Medicago truncatula GN=MTR_1g031110 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.5e-94
Identity = 167/206 (81.07%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 43  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVA 102
           RFITGSAS PSLSIWRRKKE+GKEGLI+ KELKR+QS+ +RLDRF+ S+VSRLLKSDLV+
Sbjct: 16  RFITGSASKPSLSIWRRKKELGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVS 75

Query: 103 VLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGE 162
           VL E  RQ+ VFL MKLY++VRKE+WYRPDMFFYRDMLMMLA+NKRV+ETK+VW+DLKGE
Sbjct: 76  VLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 135

Query: 163 GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQ 222
           GVLFDQHTFGDI+RAYLD+ MPSEAMDIY EMRQSP+ PLSLPFRVILKGL+PYPELRE+
Sbjct: 136 GVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK 195

Query: 223 VKDDFLELFPDMIVYDPPEDLFEEDE 249
           +KDDFLE+FPDMI+YDPPEDLF++ E
Sbjct: 196 IKDDFLEVFPDMIIYDPPEDLFDDHE 221

[Close]

BLAST of CmoCh11G009010 vs. TrEMBL
Match: G7J6N2_MEDTR (PPR containing plant-like protein OS=Medicago truncatula GN=MTR_3g079890 PE=4 SV=2)

HSP 1 Score: 349.4 bits (895), Expect = 3.8e-93
Identity = 164/206 (79.61%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 43  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVA 102
           RFITGSAS PSLSIWRRKKE+GKEGL++ KELKR+Q++ +RLDRF+ S+VSRLLKSDLV+
Sbjct: 20  RFITGSASKPSLSIWRRKKELGKEGLVITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVS 79

Query: 103 VLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGE 162
           VL E  RQ+ VFL MKLY++VRKE+WYRPDMFFYRDML+MLA+NKRV+ETK+VW+DLKGE
Sbjct: 80  VLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGE 139

Query: 163 GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQ 222
           GVLFDQHTFGDI+RAYLD+ MPSEAMDIY EMRQSP+ PLSLPFRVILKGL+PYPELRE+
Sbjct: 140 GVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK 199

Query: 223 VKDDFLELFPDMIVYDPPEDLFEEDE 249
           +KDDFLE+FPDMI+YDPPEDLF++ E
Sbjct: 200 IKDDFLEVFPDMIIYDPPEDLFDDHE 225

[Close]

BLAST of CmoCh11G009010 vs. TrEMBL
Match: A0A059D9X5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03737 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 180/255 (70.59%), Postives = 207/255 (81.18%), Query Frame = 1


Query: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHH-------RPQQQLLLRFITGSASSPS 60
           ML  A +LL R     T+  + + L H    +H         PQ Q + +++  + SSPS
Sbjct: 1   MLNLAFHLLLR---RRTALRNQHLLFHNNLAKHRLLSLLLLSPQTQQISQYVR-TTSSPS 60

Query: 61  LSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQV 120
           LSIWRRKKE+GKEGLIV KELKRIQSN +RLDRFI SHVSRLLKSDL++VL E QRQ+QV
Sbjct: 61  LSIWRRKKEIGKEGLIVAKELKRIQSNPVRLDRFIKSHVSRLLKSDLISVLAEFQRQDQV 120

Query: 121 FLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGD 180
           FLCMKLYNVVRKE+WYRPDMFFYRDMLMMLA+NK V+E + VWEDLK E VLFDQHTFGD
Sbjct: 121 FLCMKLYNVVRKEIWYRPDMFFYRDMLMMLARNKNVDEVRHVWEDLKREEVLFDQHTFGD 180

Query: 181 IMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPD 240
           IMRA+LD+ +PSEAM+IY EMR+SPD PLSLPFRVILKGL+PYPELRE+VKDDFLELFP 
Sbjct: 181 IMRAFLDSGLPSEAMEIYDEMRRSPDPPLSLPFRVILKGLIPYPELRERVKDDFLELFPG 240

Query: 241 MIVYDPPEDLFEEDE 249
           MIVYDPPEDLFE+ E
Sbjct: 241 MIVYDPPEDLFEDQE 251

[Close]

BLAST of CmoCh11G009010 vs. TrEMBL
Match: A0A061GTZ5_THECC (Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_040904 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.2e-92
Identity = 175/230 (76.09%), Postives = 202/230 (87.83%), Query Frame = 1


Query: 25  LTHCTFFEHHRPQQQLLLRF-ITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIR 84
           L H T  E+   Q+  L+RF I GSASSPSLSIWRRKKEM KEGLI  KELKR+QSN +R
Sbjct: 19  LLHDTLTEN---QRLALVRFYIPGSASSPSLSIWRRKKEMTKEGLIAAKELKRVQSNPVR 78

Query: 85  LDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMML 144
           LDRFI S++SRLLKSDLV+VL E QRQ+QVFL MKLY+VVRKE+WYRPDMFFYRDMLMML
Sbjct: 79  LDRFIRSNISRLLKSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMML 138

Query: 145 AKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLS 204
           A+N++V+E++QVWEDLK E VLFDQHTFGD++RAYLD+ +PSEAMDIY EMR+SPD PLS
Sbjct: 139 ARNRKVDESRQVWEDLKREEVLFDQHTFGDLVRAYLDSGLPSEAMDIYEEMRRSPDSPLS 198

Query: 205 LPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEGMCKS 254
           LPFRVILKGL+PYPELRE+VKDDFLELFPDMIVYDPPEDLF ++E   +S
Sbjct: 199 LPFRVILKGLLPYPELREKVKDDFLELFPDMIVYDPPEDLFGDEESKRES 245

[Close]

BLAST of CmoCh11G009010 vs. TrEMBL
Match: M5WMR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027127mg PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91
Identity = 178/261 (68.20%), Postives = 212/261 (81.23%), Query Frame = 1


Query: 1   MLRFAPNLLRRFSNSATS-TIHVYRLTHCTFFEHHRPQQQ-----LLLRFIT--GSASSP 60
           MLR APNL+RR S++  S +   +  + C    +  PQ Q        R+ +    ASSP
Sbjct: 1   MLRLAPNLVRRTSSTTPSPSPSSFNFSVCLLLRNTFPQCQQGDHPFQKRYFSWGSKASSP 60

Query: 61  SLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQ 120
           SLSIWRR+KEMGKEGLI  KELKR++S+ +RLD+FI S+VSRLLKSDL+AVL E QRQ+Q
Sbjct: 61  SLSIWRRRKEMGKEGLIAAKELKRLRSHPLRLDQFIRSNVSRLLKSDLIAVLAEFQRQDQ 120

Query: 121 VFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFG 180
           VFL MK+Y+VVRKE+WYRPDMFFYRDMLMML +NK+V+E KQVW DLK E VLFDQHTFG
Sbjct: 121 VFLSMKIYDVVRKEIWYRPDMFFYRDMLMMLGRNKKVDEAKQVWGDLKREEVLFDQHTFG 180

Query: 181 DIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFP 240
           DI+RA+LDN +PSEAM+IY EMRQSPD P+SLPFRVILKGL+PYPELRE+VKDDFLELFP
Sbjct: 181 DIIRAFLDNGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFP 240

Query: 241 DMIVYDPPEDLFEEDEGMCKS 254
           DMI+YDPPEDLFE+ E  CK+
Sbjct: 241 DMIIYDPPEDLFEDQE--CKT 259

[Close]

BLAST of CmoCh11G009010 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-83
Identity = 147/186 (79.03%), Postives = 167/186 (89.78%), Query Frame = 1


Query: 63  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 122
           M KEGLI  KELKR+Q+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNA 182
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLK E VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 183 MPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPED 242
           +P EAM +Y EMR+SPDRPLSLPFRVILKGLVPYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 243 LFEEDE 249
           + E+ +
Sbjct: 181 ICEDSD 186

[Close]

BLAST of CmoCh11G009010 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-52
Identity = 95/210 (45.24%), Postives = 148/210 (70.48%), Query Frame = 1


Query: 35  RPQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSR 94
           +P    + RF  G    P   +WR KK +GKE L V+  LKR++ +  +LD+FI +HV R
Sbjct: 48  KPFTVFVSRFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFR 107

Query: 95  LLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQ 154
           LLK D++AV+ EL+RQ +  L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   
Sbjct: 108 LLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMA 167

Query: 155 VWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLV 214
           +WE +K E +  D  T+ +++R +L +  P++AM++Y +M +SPD P  LPFRV+LKGL+
Sbjct: 168 LWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLL 227

Query: 215 PYPELREQVKDDFLELFPDMIVYDPPEDLF 245
           P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 228 PHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]

BLAST of CmoCh11G009010 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1


Query: 84  LDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMML 143
           LDR I S   RLLK D+VAVL EL RQN+  L +K++  +RKE WY+P +  Y DM+ ++
Sbjct: 541 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVM 600

Query: 144 AKNKRVEETKQVWEDLKGE-GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPL 203
           A N  +EE   ++  +K E G++ +   F  ++   L++ +    MD Y  M+     P 
Sbjct: 601 ADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPD 660

Query: 204 SLPFRVILKGLVPYPE--LREQVKDDFLELFPDMIVYDPPEDLFEEDE 249
              FRV++ GL    E  L   V+ D  E + + +      +  EEDE
Sbjct: 661 RASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESL------EFIEEDE 702

[Close]

BLAST of CmoCh11G009010 vs. TAIR10
Match: AT3G42570.1 (AT3G42570.1 peroxidase family protein)

HSP 1 Score: 52.4 bits (124), Expect = 4.9e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 60 KKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVS 94
          KKE  KEGLI  KELKR+Q+NL+RLDRFI SH S
Sbjct: 4  KKEKSKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37

[Close]

BLAST of CmoCh11G009010 vs. TAIR10
Match: AT3G27750.1 (AT3G27750.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 1


Query: 63  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 122
           +  E +  ++ LKR     + L   +   + RL+KSDL++VL EL RQ+   L + + + 
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 123 VRKEVWYRP-DMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDN 182
           +R E  Y P D+  Y D++  L +NK  +E  ++  ++ G     D      ++RA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 183 AMPSEAMDIYREMRQS 198
                 + +Y  MR+S
Sbjct: 168 ERRESVVRVYTLMRES 180

[Close]

BLAST of CmoCh11G009010 vs. NCBI nr
Match: gi|449442589|ref|XP_004139064.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus])

HSP 1 Score: 428.7 bits (1101), Expect = 7.1e-117
Identity = 220/253 (86.96%), Postives = 229/253 (90.51%), Query Frame = 1


Query: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60
           MLR APNLLR+ S+S  S+   +R +  TF      QQQLLLRFITGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 240
           N M SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEGMCKS 254
           EDLFEEDE   KS
Sbjct: 241 EDLFEEDEDRNKS 253

[Close]

BLAST of CmoCh11G009010 vs. NCBI nr
Match: gi|659098889|ref|XP_008450338.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 7.1e-117
Identity = 220/253 (86.96%), Postives = 229/253 (90.51%), Query Frame = 1


Query: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60
           MLR APNLLR+ S+S  S+   +R +  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEGMCKS 254
           EDLFEEDE   KS
Sbjct: 241 EDLFEEDEDRNKS 253

[Close]

BLAST of CmoCh11G009010 vs. NCBI nr
Match: gi|357438675|ref|XP_003589614.1| (PPR containing plant-like protein [Medicago truncatula])

HSP 1 Score: 352.4 bits (903), Expect = 6.4e-94
Identity = 167/206 (81.07%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 43  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVA 102
           RFITGSAS PSLSIWRRKKE+GKEGLI+ KELKR+QS+ +RLDRF+ S+VSRLLKSDLV+
Sbjct: 16  RFITGSASKPSLSIWRRKKELGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVS 75

Query: 103 VLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGE 162
           VL E  RQ+ VFL MKLY++VRKE+WYRPDMFFYRDMLMMLA+NKRV+ETK+VW+DLKGE
Sbjct: 76  VLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 135

Query: 163 GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQ 222
           GVLFDQHTFGDI+RAYLD+ MPSEAMDIY EMRQSP+ PLSLPFRVILKGL+PYPELRE+
Sbjct: 136 GVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK 195

Query: 223 VKDDFLELFPDMIVYDPPEDLFEEDE 249
           +KDDFLE+FPDMI+YDPPEDLF++ E
Sbjct: 196 IKDDFLEVFPDMIIYDPPEDLFDDHE 221

[Close]

BLAST of CmoCh11G009010 vs. NCBI nr
Match: gi|922375618|ref|XP_003601363.2| (PPR containing plant-like protein [Medicago truncatula])

HSP 1 Score: 349.4 bits (895), Expect = 5.4e-93
Identity = 164/206 (79.61%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 43  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVA 102
           RFITGSAS PSLSIWRRKKE+GKEGL++ KELKR+Q++ +RLDRF+ S+VSRLLKSDLV+
Sbjct: 20  RFITGSASKPSLSIWRRKKELGKEGLVITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVS 79

Query: 103 VLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGE 162
           VL E  RQ+ VFL MKLY++VRKE+WYRPDMFFYRDML+MLA+NKRV+ETK+VW+DLKGE
Sbjct: 80  VLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGE 139

Query: 163 GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQ 222
           GVLFDQHTFGDI+RAYLD+ MPSEAMDIY EMRQSP+ PLSLPFRVILKGL+PYPELRE+
Sbjct: 140 GVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK 199

Query: 223 VKDDFLELFPDMIVYDPPEDLFEEDE 249
           +KDDFLE+FPDMI+YDPPEDLF++ E
Sbjct: 200 IKDDFLEVFPDMIIYDPPEDLFDDHE 225

[Close]

BLAST of CmoCh11G009010 vs. NCBI nr
Match: gi|802558879|ref|XP_012065875.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas])

HSP 1 Score: 348.6 bits (893), Expect = 9.3e-93
Identity = 180/257 (70.04%), Postives = 210/257 (81.71%), Query Frame = 1


Query: 7   NLLRRFSNSATSTI---------HVYRLTHC----TFFEHHRPQQQLLL--RFITGSASS 66
           NLLRR S+S++S           +++  TH        +  + QQQL +  + I+  +S 
Sbjct: 5   NLLRRISSSSSSRTPLVSHSPLENLHYQTHLFSKINSVKDQKKQQQLFILSQHISNLSSK 64

Query: 67  PSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQN 126
           PSLSIWRRKKEMGKEGLIV KELKR+QSN +RLD FI SHVSRLLKSDLVAVL E QRQ+
Sbjct: 65  PSLSIWRRKKEMGKEGLIVAKELKRLQSNPVRLDWFIKSHVSRLLKSDLVAVLAEFQRQD 124

Query: 127 QVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTF 186
           QVFLCMKLYNVVRKE+WYRPDMFFYRDMLMMLA+N++V+E K VW+DLK EGVLFDQHTF
Sbjct: 125 QVFLCMKLYNVVRKEIWYRPDMFFYRDMLMMLARNRKVDEVKLVWQDLKREGVLFDQHTF 184

Query: 187 GDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELF 246
           GDI+RA+LD+ +PSEAMD Y EMR+SPD PLSLPFRVILKGL+PYP+LREQVKDDFLELF
Sbjct: 185 GDIIRAFLDSGLPSEAMDTYEEMRKSPDLPLSLPFRVILKGLIPYPDLREQVKDDFLELF 244

Query: 247 PDMIVYDPPEDLFEEDE 249
           P+MIVYDP EDLFE+ E
Sbjct: 245 PNMIVYDPAEDLFEDQE 261

The following BLAST results are available for this feature:

BLAST of CmoCh11G009010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR89_ARATH	3.3e-82	79.03	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN...	[more]
PP266_ARATH	3.9e-51	45.24	Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh11G009010 vs. TrEMBL


Match Name	E-value	Identity	Description
G7I945_MEDTR	4.5e-94	81.07	PPR containing plant-like protein OS=Medicago truncatula GN=MTR_1g031110 PE=4 SV...	[more]
G7J6N2_MEDTR	3.8e-93	79.61	PPR containing plant-like protein OS=Medicago truncatula GN=MTR_3g079890 PE=4 SV...	[more]
A0A059D9X5_EUCGR	2.5e-92	70.59	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03737 PE=4 SV=1	[more]
A0A061GTZ5_THECC	3.2e-92	76.09	Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_040904 PE...	[more]
M5WMR9_PRUPE	1.6e-91	68.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027127mg PE=4 SV=1	[more]

BLAST of CmoCh11G009010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62350.1	1.9e-83	79.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G46870.1	2.2e-52	45.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	1.0e-17	34.52	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G42570.1	4.9e-07	73.53	peroxidase family protein	[more]
AT3G27750.1	2.4e-06	27.21	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh11G009010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442589\|ref\|XP_004139064.1\|	7.1e-117	86.96	PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativu...	[more]
gi\|659098889\|ref\|XP_008450338.1\|	7.1e-117	86.96	PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo]	[more]
gi\|357438675\|ref\|XP_003589614.1\|	6.4e-94	81.07	PPR containing plant-like protein [Medicago truncatula]	[more]
gi\|922375618\|ref\|XP_003601363.2\|	5.4e-93	79.61	PPR containing plant-like protein [Medicago truncatula]	[more]
gi\|802558879\|ref\|XP_012065875.1\|	9.3e-93	70.04	PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G009010.1	CmoCh11G009010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 170..196 score: 0.03coord: 136..164 score:
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 167..201 score: 9.668coord: 132..166 score: 8
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 68..248 score: 1.4
None	No IPR available	PANTHER	PTHR24015:SF590	SUBFAMILY NOT NAMED	coord: 68..248 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G009010	Cucsa.355630	Cucumber (Gy14) v1	cgycmoB0973
CmoCh11G009010	CmaCh11G008890	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G009010	Cla007353	Watermelon (97103) v1	cmowmB089
CmoCh11G009010	Csa1G629100	Cucumber (Chinese Long) v2	cmocuB075
CmoCh11G009010	MELO3C015110	Melon (DHL92) v3.5.1	cmomeB097
CmoCh11G009010	ClCG03G012540	Watermelon (Charleston Gray)	cmowcgB101
CmoCh11G009010	CSPI01G31090	Wild cucumber (PI 183967)	cmocpiB078
CmoCh11G009010	Lsi06G005830	Bottle gourd (USVL1VR-Ls)	cmolsiB118
CmoCh11G009010	Cp4.1LG04g12310	Cucurbita pepo (Zucchini)	cmocpeB129
CmoCh11G009010	MELO3C015110.2	Melon (DHL92) v3.6.1	cmomedB104
CmoCh11G009010	CsaV3_1G043490	Cucumber (Chinese Long) v3	cmocucB0090
CmoCh11G009010	Cla97C03G062840	Watermelon (97103) v2	cmowmbB100
CmoCh11G009010	Bhi02G001238	Wax gourd	cmowgoB0159
CmoCh11G009010	CsGy1G030320	Cucumber (Gy14) v2	cgybcmoB027
CmoCh11G009010	Carg25984	Silver-seed gourd	carcmoB1201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G009010	Silver-seed gourd	carcmoB1228
CmoCh11G009010	Silver-seed gourd	carcmoB1298
CmoCh11G009010	Cucurbita moschata (Rifu)	cmocmoB044
CmoCh11G009010	Cucurbita moschata (Rifu)	cmocmoB118
CmoCh11G009010	Cucurbita maxima (Rimu)	cmacmoB074
CmoCh11G009010	Cucurbita maxima (Rimu)	cmacmoB574
CmoCh11G009010	Cucurbita pepo (Zucchini)	cmocpeB104
CmoCh11G009010	Cucurbita pepo (Zucchini)	cmocpeB134