Carg25984 (gene) Silver-seed gourd

Overview
NameCarg25984
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein family
LocationCucurbita_argyrosperma_scaffold_311 : 102373 .. 105733 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTCGCTCCAAGCATTCGAACCCCGGCCAGTTCTTTTGAGTTTCACTTTCGGCAGGAGCATAGCTGGGCTGAATCGCTTCCAGGTTCCTCCAGAAGTTTGATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCTACGATCCATTTATATCGATTTACCGATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGGTATGCCCTCTTTTTGCTCTCTCAATCTATCTGTCTTGTCCTGCCTTCCATGACATACATTGAATTTCTAGGGAGATAAAGTTGAAAGGTTCTCTCTGAAGCTCCATCGGCGAAACGTGAATTCGATCAATCTATTGCTGTAACGTGTTGAGTTCATTAAGAATTTTGTTGTTTGGATGCATTACTTATATAGGAATAATCTTGAATTTTGTCGAACTGTGGCATTTTCGGATTGGATATGCTTTTCTTCGATTTTTATTCACCGTAGGAAAATTTCCCAAGTATTTGATGATTGCATTTTGAAGAGGTTTAGTTATGGTGAACGTTGTGGAAGTATTGATGGAGAATATAGATAGCCCACTATAGCTTGCAAACCATCATTTAGGTCAAATAGAATTAGGAACAATTGCTGTGCTAGCCTTGGGCAGCCTATGGACTTGCGAAATGGAGAAAAGTTTCATACATCGAGATCAGGGTAGGAATAGTTCCCTCAACTGGTTGGGTGTGTAGGAAATATAATCTTAAAGGACGATTTCAAAAAAGTAGGCTGAATCCCAACAGGTTAGTTGAGACTATGGCCGTGAACGACGATATTGCCGCTTGTATTGACTGATATAGCCAATAGCATAAGCCACCAATGATGATTTCAAGTTCGAAGTACTCAAATTGCCACTCAATGTCTTGAATTATGCCTCGAGGATAGGGTGGCTCTTTGGGTCGGGTAGTGATAGACTCCTATTAAATATGTATAAAAGAGAAGGCATATGAGGAAATAGAGTGGGGAAAAGGAAGTTGTTACAAGTTTGTTAGAAATGGTCCAAAGGAAGCTTTAAATGAGTGGGCAGTGAGTTTATGTATGTAGAGTGCAGGAGAGAGCTGAAGGGATATCTTTTTGCGTAATGATTTTGTGTGAGATTCTTGTGGGAGAGAGGGGAAGCTCCAGAATTCTTCCCTTAACATTGTATGCTTATTGATAAATATGCCCACTTCTTATAAGCCTCAGTTAGCTTGGGATTAGTCTTGAAGATAGCTCATTATACGTCCTTAGAGATCAGTTGAATGCACGGAGTTGGATGCACGGAGCTTAAAGCTTTGTAACGTCTTATTAGAAAAACAGTAGTGGCAATATTCCTACTTGGAGCCTAATGCATTTGACGAAGAATTTTTGCAAAGCCAAAACCAAAAATAACTACTAGATCTTTGGGAGAAGTGGGGGATCAACTCCATTAGATATATATAGTTATTCAAGAGTTAATTTGTCATTAAGATTTTCTTTGGAAGCCAAGATCCAAAAATGAGGAGGTAAAATTCCAGCATTGATGAATGAGGACCTCCTTTGAGGAGAGCAAGCAGAGTCTGGAGAATAGAGACGAAAGAGGTGAATCAATTTTCCTAGTGTTCTCCAAAGTAGAGTATTCTTGCCATTATGGACACGAACTCTATTTCTGTTAGCTAATTAGATTTAGGCTCCAATATCTGATCTGAAACATATATGCTAGCAATAATCGTCCTCTCAATAGAGGATTTTTTGTTTAAAAATCTCCATGTCCAGAAACCAAGAAAGAGAAGTTTCTCTCTTTTAGATTGCCAAGAGTCCAAGACCAAGACCACCAAACTGCATAGGGAGCTTCATATTATTGCCCTTTTTCAGACTGCAAATTCCCTAACTATTGGATGTCATAGGATCAGGAGGACGATTACTTTTGGCAGAGAAAAACTGGAATATGCTAGCCTTTTTTCATATACAACGTACACTATAATAGTGGTCCTTTGTTTGTCTGGAGGCGAGGCTTGAATTCCATGAGTGATATATATTAGAAACAGAAATTCTAGTATTATATTATTCATTGGGGATGAAATCCTCCATGACATAAGATGAATTACATAACTAGGCGCGTATGTCTCCTTTAGTGATAGTAAAGTACTTTAACAAATAAAATCCACTTATGTACCTTTAAGTATAATAAATAAATAAAATCTACTGATGCTTACTTTATTGCCCTTTTGTGTTGAAGAGATATTGAACGACAAGTTTGAAAATATTAGATGGTCGGAAACAATTTGGTGTTTGTTTTTAGATTTCTTTTAAAATGATGCATGCCTAGGACCTTATATCCTAAAAAATTTACTCTGTTCTTGTCTTGGTAATCTACTCTATTGTCTTGGAGAATAACATTCTCCAACTCTTGTAGTTTGTTACTTTACAAAGGCATCATTTATATTTTTTTTAAAATTGCCCCTTCTTAAGTTGATAGAAACCTTTGCTTTTACACCCATTGATTGCTTTGTTGACCCTTTCTTGCCCCTTCAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGATATGTGCAAGAGTGTAAAATGATCGAGGAAATGGCTGATACGGTAGCTTCTTTGTTGTCTTTTTATACTTACAGTTGCATTTAATAGGTTTTTAAACTAAAAAAAATCCATTAGGTATTGCATCGAGTTGGTCTGTGAACTTTAAAAGTGCCTAATAAGATTCTAAACTTTCTTTTAGATACAAAATATACATTCTACTATT

mRNA sequence

TTTGTCGCTCCAAGCATTCGAACCCCGGCCAGTTCTTTTGAGTTTCACTTTCGGCAGGAGCATAGCTGGGCTGAATCGCTTCCAGGTTCCTCCAGAAGTTTGATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCTACGATCCATTTATATCGATTTACCGATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGATATGTGCAAGAGTGTAAAATGATCGAGGAAATGGCTGATACGGTAGCTTCTTTGTTGTCTTTTTATACTTACAGTTGCATTTAATAGGTTTTTAAACTAAAAAAAATCCATTAGGTATTGCATCGAGTTGGTCTGTGAACTTTAAAAGTGCCTAATAAGATTCTAAACTTTCTTTTAGATACAAAATATACATTCTACTATT

Coding sequence (CDS)

TTTGTCGCTCCAAGCATTCGAACCCCGGCCAGTTCTTTTGAGTTTCACTTTCGGCAGGAGCATAGCTGGGCTGAATCGCTTCCAGGTTCCTCCAGAAGTTTGATGCTGCGATTTGCTCCAAATCTTCTTCGCAGATTCTCAAACAGTGCCACTTCTACGATCCATTTATATCGATTTACCGATTGCACGTTCTTCGAACACCATCGGCCACAGCAACAATTGCTGTTGCGCTTCATCACTGGCTCCGCTTCGAGCCCTAGCCTCTCGATATGGAGGAGGAAGAAGGAAATGGGCAAGGAGGGGTTGATTGTAGTCAAAGAGCTCAAGAGGATTCAGTCCAATCTCATTCGTCTCGACCGATTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGATCTTGTTGCGGTTCTCGTCGAGCTTCAGAGGCAGAACCAGGTCTTTCTGTGCATGAAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGTCCCGACATGTTCTTTTATAGGGACATGCTCATGATGCTTGCGAAAAATAAAAGGGTGGAAGAAACGAAGCAAGTTTGGGAGGATCTAAAGGGAGAGGGAGTACTATTTGATCAGCATACTTTTGGAGATATCATGCGGGCATACTTGGATAATGCAATGCCCTCGGAGGCCATGGACATATATCGTGAAATGAGGCAATCTCCTGATAGGCCATTATCTTTACCTTTTCGTGTCATTTTGAAAGGGCTCGTTCCATACCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTTTTCCCTGATATGATCGTTTATGACCCACCTGAAGACTTGTTTGAGGAAGATGAAGATATGTGCAAGAGTGTAAAATGA

Protein sequence

FVAPSIRTPASSFEFHFRQEHSWAESLPGSSRSLMLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDMCKSVK
Homology
[Close]
BLAST of Carg25984 vs. NCBI nr
Match: XP_023531705.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo] >XP_023531706.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 504.6 bits (1298), Expect = 2.2e-139
Identity = 252/255 (98.82%), Postives = 253/255 (99.22%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLRFAPNLLRRFSN ATSTIHLYRFT CTFFEHHRPQQQLLLRFITGSASSPSLS+WRRK
Sbjct: 1   MLRFAPNLLRRFSNRATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSVWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKSVK 290
           EDLFEEDEDMCKSVK
Sbjct: 241 EDLFEEDEDMCKSVK 255

[Close]
BLAST of Carg25984 vs. NCBI nr
Match: XP_022930047.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita moschata] >XP_022930049.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita moschata])

HSP 1 Score: 500.7 bits (1288), Expect = 3.2e-138
Identity = 251/255 (98.43%), Postives = 252/255 (98.82%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLRFAPNLLRRFSNSATSTIH+YR T CTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKSVK 290
           EDLFEEDE MCKSVK
Sbjct: 241 EDLFEEDEGMCKSVK 255

[Close]
BLAST of Carg25984 vs. NCBI nr
Match: XP_022966084.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022966085.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima])

HSP 1 Score: 492.7 bits (1267), Expect = 8.8e-136
Identity = 247/255 (96.86%), Postives = 250/255 (98.04%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLRFAPNLLRR SNSATSTIHLYRFT CTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKR+QSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDML MLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLTMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQV+DDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVRDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKSVK 290
           EDLFEEDED  KSV+
Sbjct: 241 EDLFEEDEDRFKSVR 255

[Close]
BLAST of Carg25984 vs. NCBI nr
Match: XP_004139064.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLR APNLLR+ S+S  S+   +RF+  TF      QQQLLLRFITGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           N M SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKS 288
           EDLFEEDED  KS
Sbjct: 241 EDLFEEDEDRNKS 253

[Close]
BLAST of Carg25984 vs. NCBI nr
Match: XP_008450338.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLR APNLLR+ S+S  S+   +RF+  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKS 288
           EDLFEEDED  KS
Sbjct: 241 EDLFEEDEDRNKS 253

[Close]
BLAST of Carg25984 vs. TAIR10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-83
Identity = 147/191 (76.96%), Postives = 170/191 (89.01%), Query Frame = 0 

Query: 97  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 156
           M KEGLI  KELKR+Q+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 157 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNA 216
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLK E VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 217 MPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPED 276
           +P EAM +Y EMR+SPDRPLSLPFRVILKGLVPYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 277 LFEEDEDMCKS 288
           + E+ ++  ++
Sbjct: 181 ICEDSDEEART 191

[Close]
BLAST of Carg25984 vs. TAIR10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 202.6 bits (514), Expect = 3.3e-52
Identity = 95/210 (45.24%), Postives = 148/210 (70.48%), Query Frame = 0 

Query: 69  RPQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSR 128
           +P    + RF  G    P   +WR KK +GKE L V+  LKR++ +  +LD+FI +HV R
Sbjct: 48  KPFTVFVSRFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFR 107

Query: 129 LLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQ 188
           LLK D++AV+ EL+RQ +  L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   
Sbjct: 108 LLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMA 167

Query: 189 VWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLV 248
           +WE +K E +  D  T+ +++R +L +  P++AM++Y +M +SPD P  LPFRV+LKGL+
Sbjct: 168 LWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLL 227

Query: 249 PYPELREQVKDDFLELFPDMIVYDPPEDLF 279
           P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 228 PHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Carg25984 vs. TAIR10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-18
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 0 

Query: 118 LDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMML 177
           LDR I S   RLLK D+VAVL EL RQN+  L +K++  +RKE WY+P +  Y DM+ ++
Sbjct: 541 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVM 600

Query: 178 AKNKRVEETKQVWEDLKGE-GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPL 237
           A N  +EE   ++  +K E G++ +   F  ++   L++ +    MD Y  M+     P 
Sbjct: 601 ADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPD 660

Query: 238 SLPFRVILKGLVPYPE--LREQVKDDFLELFPDMIVYDPPEDLFEEDEDM 285
              FRV++ GL    E  L   V+ D  E + + +      +  EEDE++
Sbjct: 661 RASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESL------EFIEEDEEI 704

[Close]
BLAST of Carg25984 vs. TAIR10
Match: AT3G42570.1 (peroxidase family protein)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 94  KKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVS 128
           KKE  KEGLI  KELKR+Q+NL+RLDRFI SH S
Sbjct: 4   KKEKSKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37

[Close]
BLAST of Carg25984 vs. TAIR10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-06
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 97  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 156
           +  E +  ++ LKR     + L   +   + RL+KSDL++VL EL RQ+   L + + + 
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 157 VRKEVWYRP-DMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDN 216
           +R E  Y P D+  Y D++  L +NK  +E  ++  ++ G     D      ++RA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 217 AMPSEAMDIYREMRQS 232
                 + +Y  MR+S
Sbjct: 168 ERRESVVRVYTLMRES 180

[Close]
BLAST of Carg25984 vs. Swiss-Prot
Match: sp|Q1PFH7|PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.2e-82
Identity = 147/191 (76.96%), Postives = 170/191 (89.01%), Query Frame = 0 

Query: 97  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 156
           M KEGLI  KELKR+Q+  +RLDRFI SHVSRLLKSDLV+VL E QRQNQVFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 157 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDNA 216
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLK E VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 217 MPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPPED 276
           +P EAM +Y EMR+SPDRPLSLPFRVILKGLVPYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 277 LFEEDEDMCKS 288
           + E+ ++  ++
Sbjct: 181 ICEDSDEEART 191

[Close]
BLAST of Carg25984 vs. Swiss-Prot
Match: sp|Q9STF9|THA8L_ARATH (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.9e-51
Identity = 95/210 (45.24%), Postives = 148/210 (70.48%), Query Frame = 0 

Query: 69  RPQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSR 128
           +P    + RF  G    P   +WR KK +GKE L V+  LKR++ +  +LD+FI +HV R
Sbjct: 48  KPFTVFVSRFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFR 107

Query: 129 LLKSDLVAVLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQ 188
           LLK D++AV+ EL+RQ +  L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   
Sbjct: 108 LLKLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMA 167

Query: 189 VWEDLKGEGVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLV 248
           +WE +K E +  D  T+ +++R +L +  P++AM++Y +M +SPD P  LPFRV+LKGL+
Sbjct: 168 LWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLL 227

Query: 249 PYPELREQVKDDFLELFPDMIVYDPPEDLF 279
           P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 228 PHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Carg25984 vs. Swiss-Prot
Match: sp|Q9LVW6|THA8_ARATH (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.9e-05
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 97  MGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLYNV 156
           +  E +  ++ LKR     + L   +   + RL+KSDL++VL EL RQ+   L + + + 
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 157 VRKEVWYRP-DMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLDN 216
           +R E  Y P D+  Y D++  L +NK  +E  ++  ++ G     D      ++RA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 217 AMPSEAMDIYREMRQS 232
                 + +Y  MR+S
Sbjct: 168 ERRESVVRVYTLMRES 180

[Close]
BLAST of Carg25984 vs. Swiss-Prot
Match: sp|Q9FKC3|PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 9.3e-04
Identity = 17/81 (20.99%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 151 MKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMR 210
           ++++ ++R+++WY+P++  Y  +++ML K K+ E+  ++++++  EG + +   +  ++ 
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193

Query: 211 AYLDNAMPSEAMDIYREMRQS 232
           AY  +     A  +   M+ S
Sbjct: 194 AYSRSGRFDAAFTLLERMKSS 214

[Close]
BLAST of Carg25984 vs. TrEMBL
Match: tr|A0A1S3BQ11|A0A1S3BQ11_CUCME (pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN=LOC103491974 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 7.1e-118
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94
           MLR APNLLR+ S+S  S+   +RF+  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 275 EDLFEEDEDMCKS 288
           EDLFEEDED  KS
Sbjct: 241 EDLFEEDEDRNKS 253

[Close]
BLAST of Carg25984 vs. TrEMBL
Match: tr|A0A2I4F1J6|A0A2I4F1J6_9ROSI (pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 GN=LOC108994666 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 5.9e-96
Identity = 182/255 (71.37%), Postives = 214/255 (83.92%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYRFT-------DCTFFEHHRPQQQLLLRFITGSASSPS 94
           MLR A NL R+ S S T+ +    F+         TF ++H  QQ+  LR++ GSASSPS
Sbjct: 1   MLRQAQNLFRKTSFSTTTRLPSSPFSPNFPLLLQDTFSKNH--QQKWFLRYVAGSASSPS 60

Query: 95  LSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQV 154
           LSIWRR+KEMGKEGLIV KELKR++ N +RLDRFI SHVSRLLKSDL+AVL E QRQ+Q+
Sbjct: 61  LSIWRRRKEMGKEGLIVAKELKRLRFNQLRLDRFIRSHVSRLLKSDLLAVLAEFQRQDQI 120

Query: 155 FLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGD 214
            LCMKLY+VVRKE+WYRPDM+FYRDMLMMLA+NK+V+E KQVWEDLK E VLFDQHTFGD
Sbjct: 121 LLCMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDEAKQVWEDLKKEEVLFDQHTFGD 180

Query: 215 IMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPD 274
           I+RA+LDN +PSEAMDIY EMR SPD P+SLPFRVILKGL+PYPELRE++KDDFLELFPD
Sbjct: 181 IIRAFLDNELPSEAMDIYDEMRLSPDPPISLPFRVILKGLLPYPELREKIKDDFLELFPD 240

Query: 275 MIVYDPPEDLFEEDE 283
           M+VYDPPEDLFE ++
Sbjct: 241 MVVYDPPEDLFEHED 253

[Close]
BLAST of Carg25984 vs. TrEMBL
Match: tr|A0A1J7GN98|A0A1J7GN98_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14022 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.2e-94
Identity = 170/205 (82.93%), Postives = 191/205 (93.17%), Query Frame = 0 

Query: 78  FITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAV 137
           F++GSASSPSLSIWRRKKE+GKEGLIV KELKR+QSN +RLDRFI S VSRLLKSDLVAV
Sbjct: 25  FVSGSASSPSLSIWRRKKEIGKEGLIVAKELKRLQSNPVRLDRFIQSQVSRLLKSDLVAV 84

Query: 138 LVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEG 197
           L E QRQ+QVFLCMKLYN+VRKE+WYRPDMFFYRDMLMMLA+N+RVEETK+VW DLKGE 
Sbjct: 85  LAEFQRQDQVFLCMKLYNIVRKEIWYRPDMFFYRDMLMMLARNQRVEETKRVWRDLKGEE 144

Query: 198 VLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQV 257
           VLFDQHTFGDI+RA+LD  +PSEAM+IY EMRQSPD PLSLPFRV+LKGL+PYPELRE+V
Sbjct: 145 VLFDQHTFGDIIRAFLDGGLPSEAMEIYEEMRQSPDPPLSLPFRVMLKGLIPYPELREKV 204

Query: 258 KDDFLELFPDMIVYDPPEDLFEEDE 283
           KDDFLE+FP+MI+YDPPEDLFE  E
Sbjct: 205 KDDFLEIFPNMIIYDPPEDLFENSE 229

[Close]
BLAST of Carg25984 vs. TrEMBL
Match: tr|A0A2N9FMM7|A0A2N9FMM7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16222 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 5.5e-94
Identity = 180/253 (71.15%), Postives = 211/253 (83.40%), Query Frame = 0 

Query: 35  MLRFAPNLLRRFSNSATSTIHLYR-----FTDCTFFEHHRPQQQLLLRFITGSASSPSLS 94
           MLR A  L+ + S+S+T+ + L       F        +   +Q L R+I+G ASSPSLS
Sbjct: 1   MLRHARTLITKPSSSSTTALSLSSSFFPDFPKHPLLSENSFSKQWLFRYISGLASSPSLS 60

Query: 95  IWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFL 154
           IWRRKKEMGKEGLIV KELKR++S+ +RLDRFI S+VSRLLKSDL AVL E QRQ+QVFL
Sbjct: 61  IWRRKKEMGKEGLIVAKELKRLRSDSVRLDRFIRSNVSRLLKSDLFAVLAEFQRQDQVFL 120

Query: 155 CMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIM 214
           CMKLY+VVRKE+WYRPDMFFYRDMLMMLA+NK+V+E K+VWEDLK E VLFDQHTFGDIM
Sbjct: 121 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEAKRVWEDLKREEVLFDQHTFGDIM 180

Query: 215 RAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMI 274
           RA+LD+ +PSEAM+IY EMRQSPD P+SLPFRVILKGL+PYPELRE+VKDDFLELFP MI
Sbjct: 181 RAFLDSGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPGMI 240

Query: 275 VYDPPEDLFEEDE 283
           VYDPPEDLFE+ +
Sbjct: 241 VYDPPEDLFEDQD 253

[Close]
BLAST of Carg25984 vs. TrEMBL
Match: tr|G7I945|G7I945_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11422506 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93
Identity = 167/206 (81.07%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 77  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVA 136
           RFITGSAS PSLSIWRRKKE+GKEGLI+ KELKR+QS+ +RLDRF+ S+VSRLLKSDLV+
Sbjct: 16  RFITGSASKPSLSIWRRKKELGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVS 75

Query: 137 VLVELQRQNQVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGE 196
           VL E  RQ+ VFL MKLY++VRKE+WYRPDMFFYRDMLMMLA+NKRV+ETK+VW+DLKGE
Sbjct: 76  VLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 135

Query: 197 GVLFDQHTFGDIMRAYLDNAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQ 256
           GVLFDQHTFGDI+RAYLD+ MPSEAMDIY EMRQSP+ PLSLPFRVILKGL+PYPELRE+
Sbjct: 136 GVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK 195

Query: 257 VKDDFLELFPDMIVYDPPEDLFEEDE 283
           +KDDFLE+FPDMI+YDPPEDLF++ E
Sbjct: 196 IKDDFLEVFPDMIIYDPPEDLFDDHE 221

The following BLAST results are available for this feature:
BLAST of Carg25984 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023531705.12.2e-13998.82pentatricopeptide repeat-containing protein At1g62350 [Cucurbita pepo subsp. pep... [more]
XP_022930047.13.2e-13898.43pentatricopeptide repeat-containing protein At1g62350 [Cucurbita moschata] >XP_0... [more]
XP_022966084.18.8e-13696.86pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022... [more]
XP_004139064.11.1e-11787.75PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativu... [more]
XP_008450338.11.1e-11787.75PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo][more]
BLAST of Carg25984 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62350.11.2e-8376.96Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G46870.13.3e-5245.24Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G09320.19.1e-1834.12Vacuolar sorting protein 9 (VPS9) domain[more]
AT3G42570.15.5e-0773.53peroxidase family protein[more]
AT3G27750.12.7e-0627.21FUNCTIONS IN: molecular_function unknown[more]
BLAST of Carg25984 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1PFH7|PPR89_ARATH2.2e-8276.96Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
sp|Q9STF9|THA8L_ARATH5.9e-5145.24Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9LVW6|THA8_ARATH4.9e-0527.21Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
sp|Q9FKC3|PP424_ARATH9.3e-0420.99Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
BLAST of Carg25984 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQ11|A0A1S3BQ11_CUCME7.1e-11887.75pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2I4F1J6|A0A2I4F1J6_9ROSI5.9e-9671.37pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 ... [more]
tr|A0A1J7GN98|A0A1J7GN98_LUPAN3.2e-9482.93Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14022 PE=4 S... [more]
tr|A0A2N9FMM7|A0A2N9FMM7_FAGSY5.5e-9471.15Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16222 PE=4 SV=1[more]
tr|G7I945|G7I945_MEDTR1.6e-9381.07PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11422506 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25984-RACarg25984-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 95..281
e-value: 3.1E-37
score: 129.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 170..198
e-value: 0.66
score: 10.3
coord: 204..230
e-value: 0.036
score: 14.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 201..235
score: 9.668
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 166..200
score: 8.309
NoneNo IPR availablePANTHERPTHR24015:SF590SUBFAMILY NOT NAMEDcoord: 76..276
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 76..276