CmoCh11G003890 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTCAACTCTTGCAAAGCCCATCTCCCAATAGACTTCTTCGGAACCTCCTGCCCAATTCGAGATCCAAACCTCTCCAATCTTCTTCATTCCACTTCCTCAATCGCACTGCAACAACAGTTTCAATGGCGAATCTTTCCTCCGACACCCCTTCCAGAGGATCTATCACTCATATTATCTTTGATATGGACGGCCTGTTGCTGGGTAAATTCGTTGATCATCTTAACTTCCCCTTCTTCACGCCCTCATTATTGCATTTTTCATTTCCTTTCGCACCATTATGTTGTAGATCTTCATCTGCTAATCATGTTTGCATATTGTTCAGTGATGCTTCTTAGCAACTTGCATTCTATTTGCTAAACTATGTACAATTTTGAAATTGCGATGTTCTTGAATGGACTGTGCATGAATTTTTGGTCTTAGCATGTGATGTAGTTGTTTTCAGTTCCATCTGCTCTTCGGCAGTGAGGAGATTTAGTTTAAACTCTTCTCCTAGATCTAAATATACTTTCTGTTAAATTTTCGTGAACTAATTGGTAACCCTTCTGCTGCAGATACTGAGGGGTTTTACACTGAAGTGCAACAGAAAATACTGGCAAGGTATGATAAAACTTTTGATTGGTCACTGAAGGCAAAGATGATGGGTATGAAAGCTATAGAAGCTGCTCGGGTCTTTGTTAACGAGACTGGGATTAGCGATTCTCTTAGTGCGGAGGACTTTCTTGTGGAAAGAGAGGATATGCTACGAAGCATGTTTCCGAATACCGAGGCTATGCCAGGTTAGTGTTAGCAGTTGTGACAATGGTTGATTTGATTTGATGCTGATAATCATTTCTGTAGTTATGTGGATTTCATTCCGTTTTAAGTCAAATTGGAGAGAGATGCCGCAGCTAGCCTTCAATTTTTGGGCATCTCCCATTATCCTTCACCTTACCCTTTTATTTCTACTTAAGCTTCATTCATCAGCTTGGGTGATTAATTGATGGGATAGCTAAAAAGTTGATCTTTCCTAGGAGCTGCTTCTACCTACGACAATAGATAAGAATCAGGATTGTTTGGCATCCATGCCCCCTGCTTTCCAAACAGTAATCCTTTTTCTCAGGCATATAGATGTAAATTAGATTTACATTGTTGTACTGCACCACCATGATATTAAGACGCTTAGATAGTGTTTCAGCCAAAAACAACATAAGATTCACCTTATTTATGTACAAAATTAGAACTGGTGGCTGGACATAGATTTCTTTAAAATAGACAAGCGTAAGCATTGAAAATTGGCCTTGTCATTTTTGCTGATATGTAAACGGGGAGATCCCACGTCGGTTAGGGAGGAGAATGAAACATTTTTTATAAGAGTGTGAAAAAACCTCTCTCTAGCAGACGCGTTTTAAAATCCTTGAGGAAAAGCTCGAAAGGAAAAGTCTAGAGAGGACAATTGAGCTACAAAAATATAAGATCTTATAGACTAGACAATCCAAGAATGACCTGAAATTTCTCTGTTCTCTTTCTACATACTAGCGAGTGGTTGATGTTTAAATTAATAATTTTTATTGTCACGAATTGCTTTTAGTTACCTTCACTTTCCTATTTATTGTAGGAGCTAGCCGGTTGATCAGACATCTTCATGCAAAAGGAGTGCCATTTGGCTTGGCAACTGGGTATAACTAATTTATATGATAGTTCATTGCTTAGCCTTTCATATCATAAATTCCTGCCATTCTTATGCTAATCCTAGTTCCTTCTCTCTTTGTTGTTAATTTGTATCTTTACCATTATATATCTGATGATTTTCAACAGATCTCATAAACGCCATTTTGAATTAAAAACACAAAGACATGGTGAACTTTTTAAGTTGATGCATCACGTTGTTCTTGGTGACGATCCTGAGGTTAAAAAAGGAAAACCATCTCCGGATATATTCCTTGCAGCTGCTAAAAGGTTTGAGGTATAGTTGTAACTTTTGATTCAAAGTCTTGGTTCACCCATTTACTGCCGTATGAGTGCTTCCCTTTCTTTCTTTTTATATTTTTGCTTCGAATTGATGATGGCCGTGCCACGTTTTTTATACAGGAGCATCCTGTGGATCCACAAAGAATCCTTGTTTTTGAAGATGCACCGTCAGGTGTTCTTGCAGCTAAAAATGCGGGAATGTAAGTTTCGGAATTTGAAGTTCTTACTTATTGTGTCCTTAAAACTGCTTTTTTAACATTCAACTTGAACTTGAAAGGATGTGTGGCCTTTATATCATATCATTAAGTGTCAAATGCCAACAACAGGAATTTTGTCACCCAAGTTGATTAACTTCACCTAAGTGTTGCCCATGCTTTTAGCTCTGCATATTCTATATTTTCAAAATGGGGCTGGGTTCCTTGGTTTAAGACTCCAATATTCTAGTTTTTATGATGCCACTTTCTGAATTTAAATATGCAGAGACCCATTAGTTTCAGATAATGCATTATAGGTTTACTGGGAGAACAAATATAGTCCATGATTGATTAGATTATACTACATGCCCTTCTCCTTTTCTAGTTTGGATATTTGTCTCTAGATTTATCCTAGTTCTTTATATTCTTGCAAGTGTATAGCTTGTAAGTAGAATCTGGCATGAAGTCATGTAGAAGTTGACACAGAACCAGCTAAACTTTCATATTTAGTTTTCAGACTAAATCAATATGTTTACGCAAGTGCAAGAACAAAATTGGAAGTAGTATAGAAAATAGAATCATAATTAATCTGATTGCAACAATTTTGGGTATTGTAACGGTCACTGAAACCTTCTATTGCCATTGCCAAGCAGGAATGTAATTATGGTTCCAGATCCAAGGTTGGATAGTTCTTACCTTGGTGACGCAGACCAGGTATTGAGTTCCCTCATGGATTTCAACCCCAAGGAATGGGGTCTGCCTCCGTTTGAAGATTCAGAAAGCTAATGCCTCGCATTGGATTCATGCTCTGCTGATGATACAAACAGTCTTATCATTCTAGTGGAATATCCACATTTCAAGAGAAGGTTTTCTATCAGATAGTTTGCCTGGCCTTCCTTCCCAAAATATTTACTTTGATTCTCATTTTTAACTTTGTTAACAATCGATCTCCCCGAGACAATTGGATCTCGAAATGCACTTACTAAAGATCTTTCAACTGCTCAATTGCTCATTTCAATTATTACAATCTTGTATCAGAATTTCTCTCATATCTCAATCAAATAATTCAAGGGGGAGCATCTCATTTTCTTTTTTCTCTTGGACTAGCCACCATTTATACACTCG ATGCTTCAACTCTTGCAAAGCCCATCTCCCAATAGACTTCTTCGGAACCTCCTGCCCAATTCGAGATCCAAACCTCTCCAATCTTCTTCATTCCACTTCCTCAATCGCACTGCAACAACAGTTTCAATGGCGAATCTTTCCTCCGACACCCCTTCCAGAGGATCTATCACTCATATTATCTTTGATATGGACGGCCTGTTGCTGGATACTGAGGGGTTTTACACTGAAGTGCAACAGAAAATACTGGCAAGGTATGATAAAACTTTTGATTGGTCACTGAAGGCAAAGATGATGGGTATGAAAGCTATAGAAGCTGCTCGGGTCTTTGTTAACGAGACTGGGATTAGCGATTCTCTTAGTGCGGAGGACTTTCTTGTGGAAAGAGAGGATATGCTACGAAGCATGTTTCCGAATACCGAGGCTATGCCAGGAGCTAGCCGGTTGATCAGACATCTTCATGCAAAAGGAGTGCCATTTGGCTTGGCAACTGGATCTCATAAACGCCATTTTGAATTAAAAACACAAAGACATGGTGAACTTTTTAAGTTGATGCATCACGTTGTTCTTGGTGACGATCCTGAGGTTAAAAAAGGAAAACCATCTCCGGATATATTCCTTGCAGCTGCTAAAAGGTTTGAGGAGCATCCTGTGGATCCACAAAGAATCCTTGTTTTTGAAGATGCACCGTCAGGTGTTCTTGCAGCTAAAAATGCGGGAATGAATGTAATTATGGTTCCAGATCCAAGGTTGGATAGTTCTTACCTTGGTGACGCAGACCAGGTATTGAGTTCCCTCATGGATTTCAACCCCAAGGAATGGGGTCTGCCTCCGTTTGAAGATTCAGAAAGCTAATGCCTCGCATTGGATTCATGCTCTGCTGATGATACAAACAGTCTTATCATTCTAGTGGAATATCCACATTTCAAGAGAAGGTTTTCTATCAGATAGTTTGCCTGGCCTTCCTTCCCAAAATATTTACTTTGATTCTCATTTTTAACTTTGTTAACAATCGATCTCCCCGAGACAATTGGATCTCGAAATGCACTTACTAAAGATCTTTCAACTGCTCAATTGCTCATTTCAATTATTACAATCTTGTATCAGAATTTCTCTCATATCTCAATCAAATAATTCAAGGGGGAGCATCTCATTTTCTTTTTTCTCTTGGACTAGCCACCATTTATACACTCG ATGCTTCAACTCTTGCAAAGCCCATCTCCCAATAGACTTCTTCGGAACCTCCTGCCCAATTCGAGATCCAAACCTCTCCAATCTTCTTCATTCCACTTCCTCAATCGCACTGCAACAACAGTTTCAATGGCGAATCTTTCCTCCGACACCCCTTCCAGAGGATCTATCACTCATATTATCTTTGATATGGACGGCCTGTTGCTGGATACTGAGGGGTTTTACACTGAAGTGCAACAGAAAATACTGGCAAGGTATGATAAAACTTTTGATTGGTCACTGAAGGCAAAGATGATGGGTATGAAAGCTATAGAAGCTGCTCGGGTCTTTGTTAACGAGACTGGGATTAGCGATTCTCTTAGTGCGGAGGACTTTCTTGTGGAAAGAGAGGATATGCTACGAAGCATGTTTCCGAATACCGAGGCTATGCCAGGAGCTAGCCGGTTGATCAGACATCTTCATGCAAAAGGAGTGCCATTTGGCTTGGCAACTGGATCTCATAAACGCCATTTTGAATTAAAAACACAAAGACATGGTGAACTTTTTAAGTTGATGCATCACGTTGTTCTTGGTGACGATCCTGAGGTTAAAAAAGGAAAACCATCTCCGGATATATTCCTTGCAGCTGCTAAAAGGTTTGAGGAGCATCCTGTGGATCCACAAAGAATCCTTGTTTTTGAAGATGCACCGTCAGGTGTTCTTGCAGCTAAAAATGCGGGAATGAATGTAATTATGGTTCCAGATCCAAGGTTGGATAGTTCTTACCTTGGTGACGCAGACCAGGTATTGAGTTCCCTCATGGATTTCAACCCCAAGGAATGGGGTCTGCCTCCGTTTGAAGATTCAGAAAGCTAA
BLAST of CmoCh11G003890 vs. Swiss-Prot
Match: GPP1_ARATH ((DL)-glycerol-3-phosphatase 1 OS=Arabidopsis thaliana GN=GPP1 PE=1 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 1.1e-102 Identity = 186/282 (65.96%), Postives = 228/282 (80.85%), Query Frame = 1
BLAST of CmoCh11G003890 vs. Swiss-Prot
Match: GPP2_ARATH ((DL)-glycerol-3-phosphatase 2 OS=Arabidopsis thaliana GN=GPP2 PE=1 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 1.4e-102 Identity = 178/239 (74.48%), Postives = 210/239 (87.87%), Query Frame = 1
BLAST of CmoCh11G003890 vs. Swiss-Prot
Match: HDHD1_HUMAN (Pseudouridine-5'-phosphatase OS=Homo sapiens GN=PUDP PE=1 SV=3) HSP 1 Score: 227.6 bits (579), Expect = 1.7e-58 Identity = 115/224 (51.34%), Postives = 149/224 (66.52%), Query Frame = 1
BLAST of CmoCh11G003890 vs. Swiss-Prot
Match: HDHD1_MOUSE (Pseudouridine-5'-phosphatase OS=Mus musculus GN=Pudp PE=1 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.5e-51 Identity = 108/230 (46.96%), Postives = 142/230 (61.74%), Query Frame = 1
BLAST of CmoCh11G003890 vs. Swiss-Prot
Match: GS1_DROME (Probable pseudouridine-5'-phosphatase OS=Drosophila melanogaster GN=Gs1l PE=2 SV=2) HSP 1 Score: 204.1 bits (518), Expect = 2.0e-51 Identity = 111/226 (49.12%), Postives = 141/226 (62.39%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TrEMBL
Match: A0A0A0LZT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423140 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 5.8e-127 Identity = 234/285 (82.11%), Postives = 252/285 (88.42%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TrEMBL
Match: A0A067KJU5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08666 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 8.7e-107 Identity = 189/239 (79.08%), Postives = 215/239 (89.96%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TrEMBL
Match: A0A068U494_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041424001 PE=4 SV=1) HSP 1 Score: 392.1 bits (1006), Expect = 5.7e-106 Identity = 188/234 (80.34%), Postives = 211/234 (90.17%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TrEMBL
Match: G7JVF5_MEDTR (Haloacid dehalogenase-like hydrolase OS=Medicago truncatula GN=MTR_4g128090 PE=4 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 2.8e-105 Identity = 188/251 (74.90%), Postives = 213/251 (84.86%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TrEMBL
Match: B7FHV4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 6.3e-105 Identity = 186/239 (77.82%), Postives = 209/239 (87.45%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TAIR10
Match: AT4G25840.1 (AT4G25840.1 glycerol-3-phosphatase 1) HSP 1 Score: 374.4 bits (960), Expect = 6.2e-104 Identity = 186/282 (65.96%), Postives = 228/282 (80.85%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TAIR10
Match: AT5G57440.1 (AT5G57440.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 374.0 bits (959), Expect = 8.1e-104 Identity = 178/239 (74.48%), Postives = 210/239 (87.87%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TAIR10
Match: AT4G21470.1 (AT4G21470.1 riboflavin kinase/FMN hydrolase) HSP 1 Score: 155.6 bits (392), Expect = 4.5e-38 Identity = 87/222 (39.19%), Postives = 129/222 (58.11%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TAIR10
Match: AT1G56500.1 (AT1G56500.1 haloacid dehalogenase-like hydrolase family protein) HSP 1 Score: 52.0 bits (123), Expect = 7.0e-07 Identity = 77/285 (27.02%), Postives = 123/285 (43.16%), Query Frame = 1
BLAST of CmoCh11G003890 vs. TAIR10
Match: AT3G48420.1 (AT3G48420.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06 Identity = 56/231 (24.24%), Postives = 93/231 (40.26%), Query Frame = 1
BLAST of CmoCh11G003890 vs. NCBI nr
Match: gi|659107301|ref|XP_008453605.1| (PREDICTED: (DL)-glycerol-3-phosphatase 2 [Cucumis melo]) HSP 1 Score: 473.8 bits (1218), Expect = 2.1e-130 Identity = 238/285 (83.51%), Postives = 258/285 (90.53%), Query Frame = 1
BLAST of CmoCh11G003890 vs. NCBI nr
Match: gi|449457163|ref|XP_004146318.1| (PREDICTED: (DL)-glycerol-3-phosphatase 2-like [Cucumis sativus]) HSP 1 Score: 461.8 bits (1187), Expect = 8.4e-127 Identity = 234/285 (82.11%), Postives = 252/285 (88.42%), Query Frame = 1
BLAST of CmoCh11G003890 vs. NCBI nr
Match: gi|645234189|ref|XP_008223698.1| (PREDICTED: (DL)-glycerol-3-phosphatase 2 [Prunus mume]) HSP 1 Score: 396.4 bits (1017), Expect = 4.3e-107 Identity = 209/292 (71.58%), Postives = 234/292 (80.14%), Query Frame = 1
BLAST of CmoCh11G003890 vs. NCBI nr
Match: gi|747047855|ref|XP_011069913.1| (PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]) HSP 1 Score: 396.0 bits (1016), Expect = 5.6e-107 Identity = 193/232 (83.19%), Postives = 212/232 (91.38%), Query Frame = 1
BLAST of CmoCh11G003890 vs. NCBI nr
Match: gi|802608006|ref|XP_012074052.1| (PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]) HSP 1 Score: 394.8 bits (1013), Expect = 1.3e-106 Identity = 189/239 (79.08%), Postives = 215/239 (89.96%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |