CmoCh10G012640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G012640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	GRIP and coiled-coil domain-containing protein
Location	Cmo_Chr10 : 12990233 .. 12992073 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCCACCCTGTTTGATTCTGTTTTTGTTTATGATAAATAAAAGAGAACTAAAAGGAATGGTATATCATCATCCTCATCCTCATCAATAACTCCAGGCAAGATCATGTGACAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTGACTTGGTCGAGCTTTTCTGACTTCTTCCCGACCGCCTCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACCACTCCGACAACCGCCGCTTTGTTCTTCAATCCACGATCATTATGGCTACCCAAACCCAAGCTTCTACATCCGATGAGGTATGTTTTTCCTTAATCATTAATGGATGTGAAGATCGTTTGTTCATGTTCTTAGATTCTTGATCAACACCCACTTCTTAGTTTCTTCTATTTTTAACTTTAAACACCCTTCTCTGTGATATGTTTCATACTTTGCATGTAATACAGACTGCATCAATTACTTCATTTGGGTAAGAGATCATTACCAACATCTTGATAGATTAGAACAGAGCTATGGTTGATTCAATCTGTCAATTCCTTCACCAATATCTTATGGATTCATTGTACTGTTGTAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACGGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGGCCACATCCGAAGCAAGGGCAGTGGATGAGCCTCCTGTTTCTGAGAGACCATCGAACGAACCCATTGTAGGAGAAGCAACAGAGCTGCCAGTCATTGCGTTCCTGGAAAAGGGTACAAAGGAGGAGTTTGATGCAGCTGACAATAAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGAGGAATCATCAGTAACGGCAGAGTGTGGCAAGGCTCCAGCAGATACAGAGGAGGAAGACAAAGAGGCAGACAAGGAAGCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTCCAACACCAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGTGATAGAGCCAAGTACAGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTCAAAGTCATAGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGACCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGGTGCCAATGTATCTGAGGTGGAAGTAAAAGATGAACAAGTTGCGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGATGGTCTGCACTTAATAGCCAGATTCAGAGTTAAGTACTTATCAGAATATATGTTGTGAGGATTGGTTTTTTTGCATAGTTTCTTATAGTTGCAATGTAAAATTTGATATTATACCGTCATGTGTACATCGACTTCAAATTTGTGGATTTTGTGTGTGAAGTGATAAGGTATTACTTAGCGTGTTGTCTGTGGCTACATGTTGGATGTTTCAGTCATGTTTGTTCTCGGTTGGTACGAGGCCTTTTAGGGAAGCCCAAAG

mRNA sequence

TCTCTCTCCACCCTGTTTGATTCTGTTTTTGTTTATGATAAATAAAAGAGAACTAAAAGGAATGGTATATCATCATCCTCATCCTCATCAATAACTCCAGGCAAGATCATGTGACAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTGACTTGGTCGAGCTTTTCTGACTTCTTCCCGACCGCCTCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACCACTCCGACAACCGCCGCTTTGTTCTTCAATCCACGATCATTATGGCTACCCAAACCCAAGCTTCTACATCCGATGAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACGGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGGCCACATCCGAAGCAAGGGCAGTGGATGAGCCTCCTGTTTCTGAGAGACCATCGAACGAACCCATTGTAGGAGAAGCAACAGAGCTGCCAGTCATTGCGTTCCTGGAAAAGGGTACAAAGGAGGAGTTTGATGCAGCTGACAATAAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGAGGAATCATCAGTAACGGCAGAGTGTGGCAAGGCTCCAGCAGATACAGAGGAGGAAGACAAAGAGGCAGACAAGGAAGCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTCCAACACCAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGTGATAGAGCCAAGTACAGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTCAAAGTCATAGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGACCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGGTGCCAATGTATCTGAGGTGGAAGTAAAAGATGAACAAGTTGCGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGATGGTCTGCACTTAATAGCCAGATTCAGAGTTAAGTACTTATCAGAATATATGTTGTGAGGATTGGTTTTTTTGCATAGTTTCTTATAGTTGCAATGTAAAATTTGATATTATACCGTCATGTGTACATCGACTTCAAATTTGTGGATTTTGTGTGTGAAGTGATAAGGTATTACTTAGCGTGTTGTCTGTGGCTACATGTTGGATGTTTCAGTCATGTTTGTTCTCGGTTGGTACGAGGCCTTTTAGGGAAGCCCAAAG

Coding sequence (CDS)

ATGGCTACCCAAACCCAAGCTTCTACATCCGATGAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACGGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGGCCACATCCGAAGCAAGGGCAGTGGATGAGCCTCCTGTTTCTGAGAGACCATCGAACGAACCCATTGTAGGAGAAGCAACAGAGCTGCCAGTCATTGCGTTCCTGGAAAAGGGTACAAAGGAGGAGTTTGATGCAGCTGACAATAAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCATCAGAGATTGTGGGCCTTGTTCCAAAAGCACAAGAGGAATCATCAGTAACGGCAGAGTGTGGCAAGGCTCCAGCAGATACAGAGGAGGAAGACAAAGAGGCAGACAAGGAAGCACAAAACAAAGAAGCTGAAGCGATTGAGGTTGTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTCCAACACCAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGTGATAGAGCCAAGTACAGAGTTTGTAAGTGCAGAGAAAGAGGCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTCAAAGTCATAGCAGAAGACACTACTGAATCCATTACAGCTTCCAAGAACAAAGAGCAGCAAAATGAAGAACATCCTGTGGTAGCAGGCAAGTCATTAGTTGACCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGAAGGTGCCAATGTATCTGAGGTGGAAGTAAAAGATGAACAAGTTGCGAGCACAAAGGGAGAAGTGCCATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGGAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGA

Homology

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BLAST of CmoCh10G012640 vs. TrEMBL
Match: A0A0A0LYU4_CUCSA (GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G560750 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 84/220 (38.18%), Postives = 119/220 (54.09%), Query Frame = 1


Query: 140 KEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEEVIAKEISIPTEVIEPSTEFVS 199
           KE + KE+  I+VV     +   EAP     A++K  EE   KE  + TE  +       
Sbjct: 176 KEDEKKESGNIDVVAQ---LSVEEAP-----AMEKVGEE--NKEKGMKTEKAD------- 235

Query: 200 AEKEASCVVAESAETPLKVIAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAETKIEE 259
              EA+    +    P + +A    E+    + K   +++    AGK + +LIAETK++E
Sbjct: 236 ---EATHENIQKITLPREEVAPRDYETDVVVEGKSIDDQK----AGK-VANLIAETKVDE 295

Query: 260 P----QVAGLEGANVS-----------EVEVKDEQ---------VASTKGEVPSNPTQKH 319
                ++A +E A+V            E+EVKD++           + K EVPS P+ KH
Sbjct: 296 SITDEKLAPVETASVQVNETPKEPQELELEVKDKENVRAEAEVPKVNDKKEVPSKPSHKH 355

Query: 320 SHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 336
           SHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ RDDIKVK
Sbjct: 356 SHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 370

[Close]

BLAST of CmoCh10G012640 vs. TrEMBL
Match: B9I6B8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00300g PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.4e-08
Identity = 98/336 (29.17%), Postives = 149/336 (44.35%), Query Frame = 1


Query: 4   QTQASTSDEQTKKFSEAVKVTEQIEETGKGENLATSEARAVDEPPVSERPSNEPIVGEAT 63
           Q++ S  DE+T++    VK   Q E + + E  +T E R                V   T
Sbjct: 428 QSEVSKLDEKTEEHEVEVKPEGQYEVSEQVEIKSTDEKRGQ--------------VAAIT 487

Query: 64  ELPVIAFLEKGTKEEFDAADNKGEVIQKESLEV--LQNVEEQASEIVGLVPKAQEES--- 123
           ++      E G K          E+IQK   E       E    EIV    K +EE    
Sbjct: 488 QVAQAEIKEDGGKSSLP------EIIQKAGPEAEGTDLAEASLKEIVVEAEKGREEKEAR 547

Query: 124 SVTAECGKAPADTEEEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEE 183
           ++ AE  K  +DT +E+     + +     A      E+     +     E A++ + EE
Sbjct: 548 TIKAEGEKIASDTVKEELAQPIKVEEVSNAASNAKITEKSFEGEKTVESVEPALENKKEE 607

Query: 184 VIAKEISIPTEVIEPSTEFVSAEKEASCVVAESAETPLKVIAEDTTESITASKNKEQQNE 243
           + A + +     IE   +      EA+ VV+E  +     ++E   E  TA  N+E   +
Sbjct: 608 IPAIDETHKDGTIEGKLD------EATTVVSEPVKESQDSVSEAKEEEETAKTNEENSEQ 667

Query: 244 EHPVVAGKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTKGEVPSNPTQKHSHN 303
           E         VD IA++  +      LE +     + K+ Q      EVP+ PTQKHS+N
Sbjct: 668 EK--------VDEIAKSDTQN-----LEYSTQDAEDAKESQ--DLPREVPAKPTQKHSNN 722

Query: 304 LLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKV 335
           +L+++K SLVKA+KAIIGKSPT KT+SS  + D+KV
Sbjct: 728 ILTRVKQSLVKAKKAIIGKSPTPKTVSSDSKGDVKV 722

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BLAST of CmoCh10G012640 vs. TrEMBL
Match: A0A0D3AFE4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 100/358 (27.93%), Postives = 163/358 (45.53%), Query Frame = 1


Query: 5   TQASTSDE-------QTKKFSEAVKVTEQIEETGKGENLATSEARAVDEPPVSERP--SN 64
           T A+TSD+       Q  K  E   V ++ E+  K + ++ S  +   E    E    S+
Sbjct: 8   TTATTSDKPMENKVIQEAKLMEKEIVLQETEDVVKDKPVSDSNLKVTKEESTEEGKDESD 67

Query: 65  EPIVGEATELPVIAFLEKGTKEEFDAADNKGEVIQKESLEVLQNVEEQASEIVGLVPKAQ 124
           E  V E  EL     + +   E  D    + E + +E      N +++ +++V +     
Sbjct: 68  EKKVAEQVELKEPTLVPEVNTEAVDEEKQRVESVVEED-----NKDKEETKVVDVSESTD 127

Query: 125 EESSVTAECGKAPADTE--EEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVD 184
           E  S   E    P D +   E      E ++K+ + +EV P  E     E P  K + V 
Sbjct: 128 EAGSKQVE----PVDVQLVREVPSETVEDKSKDVDLLEVEPKPEASEKVETPLEKAKEVA 187

Query: 185 KELEEVIAKEISIPTEVIEPSTEFVSAEKEASCVVAESAETPLKVIAED---TTESITAS 244
            E+E  + KE   P +V+ P      A  +   ++ E ++   +  +E     T+  T  
Sbjct: 188 PEVE--VVKEEETPEDVLSPPDVIEKAITDEKHLLEEPSKDEQEKASEAKDVVTKLATED 247

Query: 245 KNKEQQNEEHPVVAGKSLVDLIAETKIEEPQVAGLEGANVSE---------VEVKDEQVA 304
           +N  ++ E H   A     + + ET  EEP+    EG    E         VEV DE   
Sbjct: 248 ENITKETETH--AAEDKSEEALKETD-EEPREKETEGIKQEESVADKVSEVVEVSDE--L 307

Query: 305 STKGEVPSNPT---QKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSS-QPRDDIKVK 336
             + EVP+      QKHS++++SK+K SLVKA+KAIIGKSP+SKT+++ + +++ KVK
Sbjct: 308 KQEAEVPTKEVAVKQKHSNSIMSKVKQSLVKAKKAIIGKSPSSKTITTEEAKEETKVK 349

[Close]

BLAST of CmoCh10G012640 vs. TrEMBL
Match: A0A072VNB6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 89/336 (26.49%), Postives = 154/336 (45.83%), Query Frame = 1


Query: 18   SEAVKVTEQIEETGKGENLATSEA-RAVDEPPVSERPSNEPIVGEATELPVIAFLEKGTK 77
            +E  KV   + E  + ++    ++ +  +E    E   N+   G+  E+      +    
Sbjct: 814  AETEKVEPVVTEVDENQSEPGIQSFKQEEEVKPKEETENQEQTGDRVEVHPPKDSDIEAV 873

Query: 78   EEFDAADNKGEVIQKESLEVLQNVEEQASEIVGLVPKAQEESSVTAECGKAPADTEEEDK 137
            +E + + ++  ++++E+++ L N         G+  K  E+  V  E G+   + E E  
Sbjct: 874  KETNNSGSEAILVKEENIDPLSN---------GVEEKLSEQLQVGEEVGEIIKEVEPEQA 933

Query: 138  EADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDK--ELEEVIA-----KEISIPTE 197
                E  N   +  E  P    +  A+  T     V+   E+EE I      KE+ +  E
Sbjct: 934  TEKTEGSNGTIKEEETEP-NTTVNAAQVQTTPANLVEPSPEVEEKIVVEDGKKEVVVAAE 993

Query: 198  VIEPSTEFVSA-------EKEASCVVAESAETPLKV--IAEDTTESITAS-KNKEQQNEE 257
              +   E   A       + EA     E+ ET  KV  I++   E +  +  +K +++EE
Sbjct: 994  DEKKEPEASDAVQVSSREQNEAKTATIEAGETETKVEEISKAVNEPVRETLASKFEKDEE 1053

Query: 258  HPVVAGKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTKGEVPSNPTQKHSHNL 317
              +  G   VD + + +IEEP    +E    ++     + +     E P+ P QK S+N+
Sbjct: 1054 ETIQNG---VDNLEKERIEEPVKTEVESTKENDTTTISKDLPK---ETPAKPAQKQSNNI 1113

Query: 318  LSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 336
            ++K+K SLVKA+KAI GKSP+SK LSS P+ DIKVK
Sbjct: 1114 IAKVKQSLVKAKKAITGKSPSSKNLSSDPKGDIKVK 1133

[Close]

BLAST of CmoCh10G012640 vs. TrEMBL
Match: G7IAC6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 89/336 (26.49%), Postives = 154/336 (45.83%), Query Frame = 1


Query: 18   SEAVKVTEQIEETGKGENLATSEA-RAVDEPPVSERPSNEPIVGEATELPVIAFLEKGTK 77
            +E  KV   + E  + ++    ++ +  +E    E   N+   G+  E+      +    
Sbjct: 813  AETEKVEPVVTEVDENQSEPGIQSFKQEEEVKPKEETENQEQTGDRVEVHPPKDSDIEAV 872

Query: 78   EEFDAADNKGEVIQKESLEVLQNVEEQASEIVGLVPKAQEESSVTAECGKAPADTEEEDK 137
            +E + + ++  ++++E+++ L N         G+  K  E+  V  E G+   + E E  
Sbjct: 873  KETNNSGSEAILVKEENIDPLSN---------GVEEKLSEQLQVGEEVGEIIKEVEPEQA 932

Query: 138  EADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDK--ELEEVIA-----KEISIPTE 197
                E  N   +  E  P    +  A+  T     V+   E+EE I      KE+ +  E
Sbjct: 933  TEKTEGSNGTIKEEETEP-NTTVNAAQVQTTPANLVEPSPEVEEKIVVEDGKKEVVVAAE 992

Query: 198  VIEPSTEFVSA-------EKEASCVVAESAETPLKV--IAEDTTESITAS-KNKEQQNEE 257
              +   E   A       + EA     E+ ET  KV  I++   E +  +  +K +++EE
Sbjct: 993  DEKKEPEASDAVQVSSREQNEAKTATIEAGETETKVEEISKAVNEPVRETLASKFEKDEE 1052

Query: 258  HPVVAGKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTKGEVPSNPTQKHSHNL 317
              +  G   VD + + +IEEP    +E    ++     + +     E P+ P QK S+N+
Sbjct: 1053 ETIQNG---VDNLEKERIEEPVKTEVESTKENDTTTISKDLPK---ETPAKPAQKQSNNI 1112

Query: 318  LSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 336
            ++K+K SLVKA+KAI GKSP+SK LSS P+ DIKVK
Sbjct: 1113 IAKVKQSLVKAKKAITGKSPSSKNLSSDPKGDIKVK 1132

[Close]

BLAST of CmoCh10G012640 vs. TAIR10
Match: AT3G05900.1 (AT3G05900.1 neurofilament protein-related)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-06
Identity = 89/307 (28.99%), Postives = 141/307 (45.93%), Query Frame = 1


Query: 34  ENLATSEARAVDEPPVSERPSNE-PIVGEATELPVIAFLEKGTKEEFDA-ADNKGEVIQK 93
           E   T E   VDEP   E  S     +     +P    L+   K+E +    +  ++I+K
Sbjct: 404 EKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSPADIIEK 463

Query: 94  ESLEVLQNVEEQASEIVGLVPKAQEESSVTAECGKAPADTEEEDKEADKEAQN---KEAE 153
              E    VEE + +      K  E  S  +     P + ++ D E  KE +      A+
Sbjct: 464 AITEEKHVVEEPSKD-----EKTSESGSALSPEKVVPTN-QDSDTEPKKETEGDVPSPAD 523

Query: 154 AIEVVPMEEMIGTAEAPTPKEQAVDKELEEVIAKEISIPTEVIEPSTEFVSAEKEASCVV 213
            IE    +E     E P   EQ    E ++V+ K ++   E I+  T+   AE       
Sbjct: 524 VIEKAITDEK-HVVEEPLKDEQENVSEAKDVVTK-LAAEDENIKKDTDTPVAE------- 583

Query: 214 AESAETPLKVIAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAETKIEEPQVAGLEGA 273
            +S ET    + E  TES+   K      +E P+       + +AE  +E   VA     
Sbjct: 584 GKSEET----LKETDTESV--EKEAAANKQEEPIT------EKVAEV-VETAPVA----- 643

Query: 274 NVSEVEVKDEQVASTKGEVPSNPTQKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSS-Q 333
              E++   +Q   T  E P+   QKHS++++SK+K SLVKA+KAIIG+SP+SKT+++ +
Sbjct: 644 --KEIDEAKQQPEVTTKEAPAK--QKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEE 673

Query: 334 PRDDIKV 335
           P+++IKV
Sbjct: 704 PKEEIKV 673

[Close]

BLAST of CmoCh10G012640 vs. NCBI nr
Match: gi|778662177|ref|XP_011659475.1| (PREDICTED: uncharacterized protein LOC105436184 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 84/220 (38.18%), Postives = 119/220 (54.09%), Query Frame = 1


Query: 140 KEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEEVIAKEISIPTEVIEPSTEFVS 199
           KE + KE+  I+VV     +   EAP     A++K  EE   KE  + TE  +       
Sbjct: 176 KEDEKKESGNIDVVAQ---LSVEEAP-----AMEKVGEE--NKEKGMKTEKAD------- 235

Query: 200 AEKEASCVVAESAETPLKVIAEDTTESITASKNKEQQNEEHPVVAGKSLVDLIAETKIEE 259
              EA+    +    P + +A    E+    + K   +++    AGK + +LIAETK++E
Sbjct: 236 ---EATHENIQKITLPREEVAPRDYETDVVVEGKSIDDQK----AGK-VANLIAETKVDE 295

Query: 260 P----QVAGLEGANVS-----------EVEVKDEQ---------VASTKGEVPSNPTQKH 319
                ++A +E A+V            E+EVKD++           + K EVPS P+ KH
Sbjct: 296 SITDEKLAPVETASVQVNETPKEPQELELEVKDKENVRAEAEVPKVNDKKEVPSKPSHKH 355

Query: 320 SHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 336
           SHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ RDDIKVK
Sbjct: 356 SHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKVK 370

[Close]

BLAST of CmoCh10G012640 vs. NCBI nr
Match: gi|743890469|ref|XP_011039056.1| (PREDICTED: neurofilament medium polypeptide-like [Populus euphratica])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 96/332 (28.92%), Postives = 149/332 (44.88%), Query Frame = 1


Query: 8   STSDEQTKKFSEAVKVTEQIEETGKGENLATSEARAVDEPPVSERPSNEP---IVGEATE 67
           S   E   K  E  +VT   E+  K E    +EAR+     V  +P+NE    + G   E
Sbjct: 444 SLGPEVEVKPEEQPEVTTHTEKQKKHEVELKTEARSEVSEQVEIKPTNEKPEEVAGITQE 503

Query: 68  LPVIAFLEKGTKEEFDAADNKGEVIQKESLEVLQNVEEQASEIVGLVPKAQEESSVTAEC 127
             V    + G     +     G   +K+  E    VE    E+VG   K  EE       
Sbjct: 504 AEVDVKEDIGKSSLPEVVGKVGSEDEKKEAEGTDPVEVPVKEVVGEAEKGGEEK------ 563

Query: 128 GKAPADTEEEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEEVIAKEI 187
            +A    +E +  A +  + + A  I+V  + + +  AE  T K    +K +E V+    
Sbjct: 564 -EAQTTKDEGENIASETLKEELAHPIKVEDVSDAVSNAEV-TEKSFEGEKTVENVVP--- 623

Query: 188 SIPTEVIEPSTEFVSAEKEASCVVAESAETPLKVIAEDTTESITASKNKEQQNEEHPVVA 247
                 +E   E + A +E      +  +T  K+    T  S TA ++++   EE    +
Sbjct: 624 -----AVEDKKEEIPAGEETE----KDQKTEGKLDEATTNGSKTAKESQDSGLEEKEEES 683

Query: 248 GKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTK--GEVPSNPTQKHSHNLLSK 307
            K+  +   + K +E   +  +    S  +  D+   S     EVP+ PTQKHS+N+L+K
Sbjct: 684 AKNNKENSEQEKFDEIAKSDAQILEPSTTKDADDIKVSQDLPREVPAKPTQKHSNNILTK 743

Query: 308 LKHSLVKARKAIIGKSPTSKTLSSQPRDDIKV 335
           +K SLVKA+KAIIGKSPT KT+SS  + D+KV
Sbjct: 744 VKQSLVKAKKAIIGKSPTPKTVSSDTKGDVKV 755

[Close]

BLAST of CmoCh10G012640 vs. NCBI nr
Match: gi|951025543|ref|XP_014513707.1| (PREDICTED: titin [Vigna radiata var. radiata])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 85/288 (29.51%), Postives = 138/288 (47.92%), Query Frame = 1


Query: 54  SNEPIVGEATELPVIAFLEKGTKEEFDAADNKGEVIQKESLEVLQNVE--EQASEIVGLV 113
           + EP        PV+A  EK  +E+ +   +  +VI+    EV   ++  E  S   G  
Sbjct: 700 NEEPQANTVEPSPVVA--EKVVEEDNNKESSITDVIEGVPNEVASIIKSPEPTSVDQGAE 759

Query: 114 PKAQEESSVTAECGKAPADTEEEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQA 173
           P  +EE   +      PAD EE+   A+ +   KE EA   V        AE+   +EQ 
Sbjct: 760 PSLKEEREYSV-----PADVEEKVVVAENDDDKKEPEAPNAVTGSSTEEEAESRKVEEQN 819

Query: 174 VDKELEEVIAKEISIPTEVIEPSTEFVSAEKEASCVVAESAETPLKVIAEDTTESITAS- 233
             K     +A+ + +     +  +  V  +KE +       +T ++ I+   +E +  + 
Sbjct: 820 EAKTATTEVAESVKVENVRGDDDSAVVDDKKEGN------GDTKVEEISRAVSEPVRETL 879

Query: 234 KNKEQQNEEHPVVAGKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTKG---EV 293
            +K ++ EE  V  G +        K+E+ Q    E   V +V  + + + ++K    E 
Sbjct: 880 ASKFEEKEEEYVEPGVN--------KLEKEQTVEPEKTEV-QVTKESDAIKTSKDLPKET 939

Query: 294 PSNPTQKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 336
           P+ P QK S+N++SK+K SLVKA+KAI GKSP+SK LSS+ + DIKVK
Sbjct: 940 PAKPAQKQSNNIISKVKQSLVKAKKAITGKSPSSKNLSSEAKGDIKVK 965

[Close]

BLAST of CmoCh10G012640 vs. NCBI nr
Match: gi|224122806|ref|XP_002318920.1| (hypothetical protein POPTR_0013s00300g [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 98/336 (29.17%), Postives = 149/336 (44.35%), Query Frame = 1


Query: 4   QTQASTSDEQTKKFSEAVKVTEQIEETGKGENLATSEARAVDEPPVSERPSNEPIVGEAT 63
           Q++ S  DE+T++    VK   Q E + + E  +T E R                V   T
Sbjct: 428 QSEVSKLDEKTEEHEVEVKPEGQYEVSEQVEIKSTDEKRGQ--------------VAAIT 487

Query: 64  ELPVIAFLEKGTKEEFDAADNKGEVIQKESLEV--LQNVEEQASEIVGLVPKAQEES--- 123
           ++      E G K          E+IQK   E       E    EIV    K +EE    
Sbjct: 488 QVAQAEIKEDGGKSSLP------EIIQKAGPEAEGTDLAEASLKEIVVEAEKGREEKEAR 547

Query: 124 SVTAECGKAPADTEEEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEE 183
           ++ AE  K  +DT +E+     + +     A      E+     +     E A++ + EE
Sbjct: 548 TIKAEGEKIASDTVKEELAQPIKVEEVSNAASNAKITEKSFEGEKTVESVEPALENKKEE 607

Query: 184 VIAKEISIPTEVIEPSTEFVSAEKEASCVVAESAETPLKVIAEDTTESITASKNKEQQNE 243
           + A + +     IE   +      EA+ VV+E  +     ++E   E  TA  N+E   +
Sbjct: 608 IPAIDETHKDGTIEGKLD------EATTVVSEPVKESQDSVSEAKEEEETAKTNEENSEQ 667

Query: 244 EHPVVAGKSLVDLIAETKIEEPQVAGLEGANVSEVEVKDEQVASTKGEVPSNPTQKHSHN 303
           E         VD IA++  +      LE +     + K+ Q      EVP+ PTQKHS+N
Sbjct: 668 EK--------VDEIAKSDTQN-----LEYSTQDAEDAKESQ--DLPREVPAKPTQKHSNN 722

Query: 304 LLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKV 335
           +L+++K SLVKA+KAIIGKSPT KT+SS  + D+KV
Sbjct: 728 ILTRVKQSLVKAKKAIIGKSPTPKTVSSDSKGDVKV 722

[Close]

BLAST of CmoCh10G012640 vs. NCBI nr
Match: gi|659099258|ref|XP_008450509.1| (PREDICTED: titin-like isoform X1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 102/361 (28.25%), Postives = 162/361 (44.88%), Query Frame = 1


Query: 10   SDEQTKKFSEAVKVTEQIEETGKGENLATSEARAVDEPPVSERPSNEPIVGEATELPVIA 69
            S+   K   E++  ++ +E   +G  +  SE     E   S   S E    E  ++  + 
Sbjct: 951  SEVIAKDIDESLVPSKDMEGPVEGFPVIGSEEMGAKEVSGSTLGSEEIEKLEPCKVTEVR 1010

Query: 70   FLEKGTKEEFDAADNKGEVIQKESLEVLQNVEEQASEIVGLVPKAQEESSVTAECGKAPA 129
              ++   E  +   N+   ++ E     +NV++Q    +G        +  T   G    
Sbjct: 1011 DGKEELSEITNHVHNEYVEVETEQTVKGENVKDQKPLAIG--------NDSTPPLGVGQI 1070

Query: 130  DTEEEDKEADKEAQNKEAEAIEVVPMEEMIGTAEAPTPKEQAVDKELEEV-IAKEISIPT 189
              EEE  +   + Q+      +  P  +++     P   ++   KE   + +  ++S+  
Sbjct: 1071 HKEEEQCKGQSDKQDSVYHRGQ--PSVDLVAPDFPPHDVKEDEKKESSNIDVVAQLSVEE 1130

Query: 190  EVIEPSTEFVSAEKEASCVVAESAETPLKVIAEDTTESITASKNK--EQQNEEHPVVAGK 249
                P+ E V  E E   +  E A+        +  ++IT  + +   +  E   VVAGK
Sbjct: 1131 A---PAMEKVGEENEEKGMKTEKADEA----THENIQNITLPREEVAPRDYETDVVVAGK 1190

Query: 250  SL--------VDLIAET----KIEEPQVAGLEGANVS-----------EVEVKDEQ---- 309
            S+         DLIAET     I + ++A +E  N             E+EVKD++    
Sbjct: 1191 SIDDQKAGEVADLIAETKVEESITDEKLAPVETVNAQVNETPKEPQELELEVKDKENVRE 1250

Query: 310  -----VASTKGEVPSNPTQKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKV 336
                   + K EVPS P+ KHSHN+LSK+K SLVKA+KAIIGKSP+SKTLSS+ RDDIKV
Sbjct: 1251 EAEVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDDIKV 1294

The following BLAST results are available for this feature:

BLAST of CmoCh10G012640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh10G012640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYU4_CUCSA	3.3e-12	38.18	GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G56075...	[more]
B9I6B8_POPTR	8.4e-08	29.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00300g PE=4 SV=1	[more]
A0A0D3AFE4_BRAOL	4.2e-07	27.93	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A072VNB6_MEDTR	4.2e-07	26.49	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]
G7IAC6_MEDTR	4.2e-07	26.49	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]

BLAST of CmoCh10G012640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05900.1	1.9e-06	28.99	neurofilament protein-related	[more]

BLAST of CmoCh10G012640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662177\|ref\|XP_011659475.1\|	4.7e-12	38.18	PREDICTED: uncharacterized protein LOC105436184 [Cucumis sativus]	[more]
gi\|743890469\|ref\|XP_011039056.1\|	1.1e-08	28.92	PREDICTED: neurofilament medium polypeptide-like [Populus euphratica]	[more]
gi\|951025543\|ref\|XP_014513707.1\|	9.3e-08	29.51	PREDICTED: titin [Vigna radiata var. radiata]	[more]
gi\|224122806\|ref\|XP_002318920.1\|	1.2e-07	29.17	hypothetical protein POPTR_0013s00300g [Populus trichocarpa]	[more]
gi\|659099258\|ref\|XP_008450509.1\|	1.2e-07	28.25	PREDICTED: titin-like isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G012640.1	CmoCh10G012640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G012640	Cucsa.050940	Cucumber (Gy14) v1	cgycmoB0048
CmoCh10G012640	CmaCh10G011860	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G012640	Cla005141	Watermelon (97103) v1	cmowmB038
CmoCh10G012640	Csa1G560750	Cucumber (Chinese Long) v2	cmocuB042
CmoCh10G012640	MELO3C015237	Melon (DHL92) v3.5.1	cmomeB060
CmoCh10G012640	ClCG03G017920	Watermelon (Charleston Gray)	cmowcgB046
CmoCh10G012640	CSPI01G25680	Wild cucumber (PI 183967)	cmocpiB045
CmoCh10G012640	Lsi06G000220	Bottle gourd (USVL1VR-Ls)	cmolsiB062
CmoCh10G012640	Cp4.1LG04g00060	Cucurbita pepo (Zucchini)	cmocpeB073
CmoCh10G012640	MELO3C015237.2	Melon (DHL92) v3.6.1	cmomedB063
CmoCh10G012640	CsaV3_1G038080	Cucumber (Chinese Long) v3	cmocucB0048
CmoCh10G012640	Cla97C03G068320	Watermelon (97103) v2	cmowmbB047
CmoCh10G012640	Bhi02G001838	Wax gourd	cmowgoB0073
CmoCh10G012640	CsGy1G025000	Cucumber (Gy14) v2	cgybcmoB009
CmoCh10G012640	Carg27770	Silver-seed gourd	carcmoB0416

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G012640	Cucumber (Chinese Long) v3	cmocucB0069
CmoCh10G012640	Cucurbita moschata (Rifu)	cmocmoB048
CmoCh10G012640	Cucumber (Gy14) v1	cgycmoB0170
CmoCh10G012640	Cucumber (Chinese Long) v2	cmocuB063
CmoCh10G012640	Watermelon (Charleston Gray)	cmowcgB044
CmoCh10G012640	Bottle gourd (USVL1VR-Ls)	cmolsiB034