CmaCh10G011860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G011860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	GRIP and coiled-coil domain-containing protein
Location	Cma_Chr10 : 8714306 .. 8717095 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGGTGTAGTGATTGGGAAAAACCCCAGAACACCTCATACGGTTAAAGAAAGTCAAGGCGTGAAAGGGTCTTTTAGAACGGGAAAATTGGGTGATAAGAGAAGTCCAAGAGACAACGTTCTTAGAGTCATGTGGGGTTGAGGAGAAGAGCAACAAGGTGTGGTCGAAAGAACCAGATTTGGCGTACAAGTTGAGGAGGTTGTTGAAGAGGAAAGGGAGGGAAAGGAAGGCAGTGGTGATGAGATGGGAATGAATTTGAGTGGCATGTTTCAGGGTCCGCCCAGAATTGATAAGGCTGTTCAGAGAGGTTGGAAGGGGAAGTAGTTTACAACTCATAACTCGTACTCCTACATTAATCACTACGAGGTTCAACCAGAGATTGTTGGTCCGATTAAGAAGAGAATTTAAAAGGAACGGAAATCACTTGCGATTCTTCGGCCACTTGGGTCAACAAGATTCACAAAACCCACTGCTGTTCTCGGCATAGAATCTTCAGATCAGGACTACTGCTCTCCAATTTTGACGGTCATAACACACAAATGTGAAATTTGGGTTGAATCAAACCCATGTTTGTATCGAACCTACTCCAAGCTCACCAGACATTCAAGCCTGGCCCAACAGCACAAATGGCCCAAACCCACTAGATTTTAGTATCCAGGCCATAGTTGAGGGTCTTGCTTGTCTTAATTCAGCTCCATAAAGTCTACCATGATCTGGAGGAGACCGGAGGGTTTAGCTCGAGTTGGAAGTGACATATAAGCACTTATGAATATGAAAATCACTTAACGAAAAGGCCAAACAATTGTAATCATGAAAAACAATACAGAAGCTGTAGACCCAGTTGCTTTTCTCTCCACCCTGTTTGATTCTGTTTTTGTTTATGATAAATAAAGGAGAACTAAAAGGAATGGTATATCATCATCATCATCCTCATCCTCATCAATAATTCCAGGCAAGATCATGTGACAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTAACTTGGTTGAGTTTTCTGAGTTCTTCCCAACCGCATCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACACTCCGACAACTGCCGTTTTGTTCTTCACTCCACAATCATTATGGCTACCCAAACCCAAACTTCTACATCCGATGAGGTGAGTTTTTCCTTAATCATTAATGGATGTGAAGATCGTTTGTTCATGTTCTTAGATTCTTGATCAACACCCACTTCTTAGTTTCTTCTATTTTTAACTTTAAACACCCTTCTCTGTGATATGTTTGATACTTTGCATGTAATACAGACTGCATCAATTCCCTAATATTTACTTCATCTGGGTAAGAGATCATTACCAACATCTTGATAGATTATAGCAGAGTTATGTTTGTTTCAATCTGTCAATTCCTTCACCAAAATTTAATGGATTCTTATAGTTAATTATTACTGTACTGTAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACAGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGCCCACATCCGAAGCAAAGGCAGTGGATGAGCCTCCTATTCCTGAGAGGCCATCGAATGAACCCATTGTAGGAGAAGCACCAGAGCTGCCAGTTATTGCGTTCATGGAACAGGGTATAAAGGAGGAGTATGATGCAGCTGAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCGTCAGAGATTGTGAGCCTCGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGATGCAGAGGAGGAAGAGACAGAGGCAGACAAGGAAGCAGAGAATAATGTTCCAGAACAACCTGTTGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTCTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTTCAACACAAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGCTCCCAAGGAAAAGGAACAGGCAAGGGCAGAATCAAGAGAAGTGATAGAGCCTAGTACAGAGTTTGTAAGCGCAGAGAAAGAGCCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTTAAAGTCATAGCAGAAGACACTTATGAAACTCAGCCTGTGGTAGCAGGGAAGTCATTAGTTGATCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGGAGCTGCCAATGTATCTGAGTTGCAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGAAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGATGGTCTGCACTTAATAGCCAGATTCAGAGTTAAGTAATTATCAGAATATATGTTGTGAGGATTGGATTTTTTTTTTGCATAGTTGATATAGTTGCAATGTAAAATTTGATATTATACCGTCATGTGTACATTGACTGCAAATTTGTGGATTTTGTGTGTGAAGTGATACGGTATTACTTATCCAAGGCGTGTTGTATGTGGCTGCATGTTGGATGTTTCGGTCATGCTTGTCTATGATGTATTGTTCATGACCGTGTTGGGATATGGAGCCTGATGCCTATATTTGAGAGATATTTCGAAAATATATAATAG

mRNA sequence

GAGAAGGTGTAGTGATTGGGAAAAACCCCAGAACACCTCATACGGTTAAAGAAAGTCAAGGCGTGAAAGGGTCTTTTAGAACGGGAAAATTGGGTGATAAGAGAAGTCCAAGAGACAACGTTCTTAGAGTCATGTGGGGTTGAGGAGAAGAGCAACAAGGTGTGGTCGAAAGAACCAGATTTGGCGTACAAGTTGAGGAGGTTGTTGAAGAGGAAAGGGAGGGAAAGGAAGGCAGTGGTGATGAGATGGGAATGAATTTGAGTGGCATGTTTCAGGGTCCGCCCAGAATTGATAAGGCTGTTCAGAGAGGTTGGAAGGGGAAGTAGTTTACAACTCATAACTCGTACTCCTACATTAATCACTACGAGGTTCAACCAGAGATTGTTGGTCCGATTAAGAAGAGAATTTAAAAGGAACGGAAATCACTTGCGATTCTTCGGCCACTTGGGTCAACAAGATTCACAAAACCCACTGCTGTTCTCGGCATAGAATCTTCAGATCAGGACTACTGCTCTCCAATTTTGACGGTCATAACACACAAATGTGAAATTTGGGTTGAATCAAACCCATGTTTGTATCGAACCTACTCCAAGCTCACCAGACATTCAAGCCTGGCCCAACAGCACAAATGGCCCAAACCCACTAGATTTTAGTATCCAGGCCATAGTTGAGGGTCTTGCTTGTCTTAATTCAGCTCCATAAAGTCTACCATGATCTGGAGGAGACCGGAGGGTTTAGCTCGAGTTGGAAGTGACATATAAGCACTTATGAATATGAAAATCACTTAACGAAAAGGCCAAACAATTGTAATCATGAAAAACAATACAGAAGCTGTAGACCCAGTTGCTTTTCTCTCCACCCTGTTTGATTCTGTTTTTGTTTATGATAAATAAAGGAGAACTAAAAGGAATGGTATATCATCATCATCATCCTCATCCTCATCAATAATTCCAGGCAAGATCATGTGACAAAAGTGTGTCAGTGACAGACTGGTTTTGGCTGCTTCTTCTCTTTACTCTTCTACTAACTTGGTTGAGTTTTCTGAGTTCTTCCCAACCGCATCATTCCTTTCCTTCATTTCTTCATCTTCTTTCAATCTCCATCCTTAACACTCCGACAACTGCCGTTTTGTTCTTCACTCCACAATCATTATGGCTACCCAAACCCAAACTTCTACATCCGATGAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACAGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGCCCACATCCGAAGCAAAGGCAGTGGATGAGCCTCCTATTCCTGAGAGGCCATCGAATGAACCCATTGTAGGAGAAGCACCAGAGCTGCCAGTTATTGCGTTCATGGAACAGGGTATAAAGGAGGAGTATGATGCAGCTGAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCGTCAGAGATTGTGAGCCTCGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGATGCAGAGGAGGAAGAGACAGAGGCAGACAAGGAAGCAGAGAATAATGTTCCAGAACAACCTGTTGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTCTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTTCAACACAAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGCTCCCAAGGAAAAGGAACAGGCAAGGGCAGAATCAAGAGAAGTGATAGAGCCTAGTACAGAGTTTGTAAGCGCAGAGAAAGAGCCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTTAAAGTCATAGCAGAAGACACTTATGAAACTCAGCCTGTGGTAGCAGGGAAGTCATTAGTTGATCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGGAGCTGCCAATGTATCTGAGTTGCAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGAAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGATGGTCTGCACTTAATAGCCAGATTCAGAGTTAAGTAATTATCAGAATATATGTTGTGAGGATTGGATTTTTTTTTTGCATAGTTGATATAGTTGCAATGTAAAATTTGATATTATACCGTCATGTGTACATTGACTGCAAATTTGTGGATTTTGTGTGTGAAGTGATACGGTATTACTTATCCAAGGCGTGTTGTATGTGGCTGCATGTTGGATGTTTCGGTCATGCTTGTCTATGATGTATTGTTCATGACCGTGTTGGGATATGGAGCCTGATGCCTATATTTGAGAGATATTTCGAAAATATATAATAG

Coding sequence (CDS)

ATGGCTACCCAAACCCAAACTTCTACATCCGATGAGCAAACCAAGAAGTTTAGTGAAGCAGTAAAAGTAACAGAACAAATAGAAGAGACAGGAAAAGGTGAAAACTTGCCCACATCCGAAGCAAAGGCAGTGGATGAGCCTCCTATTCCTGAGAGGCCATCGAATGAACCCATTGTAGGAGAAGCACCAGAGCTGCCAGTTATTGCGTTCATGGAACAGGGTATAAAGGAGGAGTATGATGCAGCTGAAGGAGAAGTCATACAAAAAGAGAGTCTGGAGGTTCTACAAAATGTAGAAGAACAAGCGTCAGAGATTGTGAGCCTCGTTCCAAAAGCACAAGACGAATCATCAGTAATGGCAGAGTGTGGCAAGGGTCCAGCAGATGCAGAGGAGGAAGAGACAGAGGCAGACAAGGAAGCAGAGAATAATGTTCCAGAACAACCTGTTGAACCACAAAACAAAGAAGCTGAAGCGATTGAGGTTCTTCCAATGGAAGAAATGATTGGAACAGCTGAAGCTTCAACACAAAAGGAGCAGGCAGTTGACAAAGAATTGGAAGAAGTGATAGCAAAAGAAATTAGCATACCCACAGAAGCTCCCAAGGAAAAGGAACAGGCAAGGGCAGAATCAAGAGAAGTGATAGAGCCTAGTACAGAGTTTGTAAGCGCAGAGAAAGAGCCAAGTTGTGTTGTAGCAGAATCTGCTGAAACTCCACTTAAAGTCATAGCAGAAGACACTTATGAAACTCAGCCTGTGGTAGCAGGGAAGTCATTAGTTGATCTGATAGCAGAAACCAAGATAGAAGAACCCCAAGTAGCAGGGCTTGGAGCTGCCAATGTATCTGAGTTGCAAGTAAAAGATGAACAAATTGTGAGCACAAAGGGATCAAACCCCACTCAGAAGCACTCGCACAATCTCTTATCCAAACTAAAACACTCATTGGTGAAGGCAAGGAAAGCCATCATTGGAAAGTCACCCACCTCAAAAACTCTTTCCTCCCAACCAAGGGATGATATTAAAGTCAAGTGA

Protein sequence

MATQTQTSTSDEQTKKFSEAVKVTEQIEETGKGENLPTSEAKAVDEPPIPERPSNEPIVGEAPELPVIAFMEQGIKEEYDAAEGEVIQKESLEVLQNVEEQASEIVSLVPKAQDESSVMAECGKGPADAEEEETEADKEAENNVPEQPVEPQNKEAEAIEVLPMEEMIGTAEASTQKEQAVDKELEEVIAKEISIPTEAPKEKEQARAESREVIEPSTEFVSAEKEPSCVVAESAETPLKVIAEDTYETQPVVAGKSLVDLIAETKIEEPQVAGLGAANVSELQVKDEQIVSTKGSNPTQKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK

Homology

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BLAST of CmaCh10G011860 vs. TrEMBL
Match: A0A0A0LW81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560760 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 70/150 (46.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 93  EVLQNVEEQASEIVSLVPKAQDES--SVMAECGKGPADAEEE--------ETEADKEAEN 152
           EV + VE  + E     PK  D +  SV+    KGP DAEEE        E EADKE E 
Sbjct: 222 EVAEKVEMNSEEAEENKPKISDNTILSVVENFSKGPTDAEEEPVTECVSVEKEADKEPET 281

Query: 153 NVPEQPVEPQNKEAEAIEVLPMEEMI--------GTAEASTQKEQAVD----KELEEVIA 212
           ++P++P E   KEA AIEV+P+EE+I           E  T K Q V+    K LEEVIA
Sbjct: 282 DIPKEPAELPKKEAPAIEVVPLEELIERVAKENLERVETPTDKGQPVELHPFKALEEVIA 341

Query: 213 KEISIPTEAPKEKEQ-----ARAESREVIE 216
           KEISIPTE PK+K+Q     A  ESRE+IE
Sbjct: 342 KEISIPTEVPKDKQQGSEIDAEQESRELIE 371

[Close]

BLAST of CmaCh10G011860 vs. TrEMBL
Match: A0A0A0LYU4_CUCSA (GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G560750 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 117/384 (30.47%), Postives = 175/384 (45.57%), Query Frame = 1


Query: 15  KKFSEAVKVTEQIEETGKGENLPTSE--AKAVDEPPIPERPSNEPIVGEAPELPVIAFME 74
           K  S +++  +  E+  +  ++  SE  AK + E  +P +    P+ G     PVI   E
Sbjct: 3   KDNSASIEPPKNEEQPNEAPHVKESEVIAKDIGESLVPSKDMEGPVEG----FPVIGSEE 62

Query: 75  QGIKEEYDAAEGEVIQKESLEVLQNVEEQASEIVSLVPKAQDESSVMAECGKGPADAEEE 134
            G KE      G  +  E +E L+  +      V+ V   ++E S +    +   D  E 
Sbjct: 63  MGAKE----MGGSTLGSEEIEKLEPCK------VTEVRDGKEELSEITNHVQN--DYVEV 122

Query: 135 ETEADKEAENNVPEQPVEPQNKEAEAIEVLPM-EEMIGTAEASTQKEQAVDKELEEVIAK 194
           ETE   + EN   + P+   N     + V  + +E     E S +++    K    V   
Sbjct: 123 ETEQIAKGENVEDQNPLAIGNDSTSPLGVGQIHKEEEQCKEQSDKQDSVYQKGQPSVNLV 182

Query: 195 EISIPTEAPKEKEQARAESREVIE-------PSTEFVSAEKEPSCVVAESAET------- 254
              IP    KE E+  + + +V+        P+ E V  E +   +  E A+        
Sbjct: 183 APDIPPHDVKEDEKKESGNIDVVAQLSVEEAPAMEKVGEENKEKGMKTEKADEATHENIQ 242

Query: 255 ----PLKVIAEDTYETQPVVAGKSLVD--------LIAETKIEEP----QVAGLGAANVS 314
               P + +A   YET  VV GKS+ D        LIAETK++E     ++A +  A+V 
Sbjct: 243 KITLPREEVAPRDYETDVVVEGKSIDDQKAGKVANLIAETKVDESITDEKLAPVETASVQ 302

Query: 315 -----------ELQVKDEQIVSTKG------------SNPTQKHSHNLLSKLKHSLVKAR 343
                      EL+VKD++ V  +             S P+ KHSHN+LSK+K SLVKA+
Sbjct: 303 VNETPKEPQELELEVKDKENVRAEAEVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVKAK 362

[Close]

BLAST of CmaCh10G011860 vs. TrEMBL
Match: G7IAC6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 87/333 (26.13%), Postives = 159/333 (47.75%), Query Frame = 1


Query: 18   SEAVKVTEQIEETGKGENLPTSEAKAVDEPPIP-ERPSNEPIVGEAPEL--PVIAFMEQG 77
            +E  KV   + E  + ++ P  ++   +E   P E   N+   G+  E+  P  + +E  
Sbjct: 813  AETEKVEPVVTEVDENQSEPGIQSFKQEEEVKPKEETENQEQTGDRVEVHPPKDSDIEAV 872

Query: 78   IKEEYDAAEGEVIQKESLEVLQN-VEEQASEIVSLVPKAQDESSVMAECGKGPADAEEEE 137
             +     +E  ++++E+++ L N VEE+ SE          +  V  E G+   + E E+
Sbjct: 873  KETNNSGSEAILVKEENIDPLSNGVEEKLSE----------QLQVGEEVGEIIKEVEPEQ 932

Query: 138  -TEADKEAENNVPEQPVEPQNK-EAEAIEVLPMEEMIGTAEASTQKEQAVDKELEEVIAK 197
             TE  + +   + E+  EP     A  ++  P   +  + E   +K    D + E V+A 
Sbjct: 933  ATEKTEGSNGTIKEEETEPNTTVNAAQVQTTPANLVEPSPEVE-EKIVVEDGKKEVVVAA 992

Query: 198  EISIPTEAPKEKEQARAESREVIEPSTEFVSAEKEPSCV--VAESAETPLKVIAEDTYET 257
            E     + P+  +  +  SRE  E  T  + A +  + V  ++++   P++      +E 
Sbjct: 993  EDE--KKEPEASDAVQVSSREQNEAKTATIEAGETETKVEEISKAVNEPVRETLASKFEK 1052

Query: 258  QPVVAGKSLVDLIAETKIEEPQVAGLGAANVSELQVKDEQIVSTKGSNPTQKHSHNLLSK 317
                  ++ VD + + +IEEP    + +   ++     + +     + P QK S+N+++K
Sbjct: 1053 DEEETIQNGVDNLEKERIEEPVKTEVESTKENDTTTISKDLPKETPAKPAQKQSNNIIAK 1112

Query: 318  LKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 343
            +K SLVKA+KAI GKSP+SK LSS P+ DIKVK
Sbjct: 1113 VKQSLVKAKKAITGKSPSSKNLSSDPKGDIKVK 1132

[Close]

BLAST of CmaCh10G011860 vs. TrEMBL
Match: A0A072VNB6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 87/333 (26.13%), Postives = 159/333 (47.75%), Query Frame = 1


Query: 18   SEAVKVTEQIEETGKGENLPTSEAKAVDEPPIP-ERPSNEPIVGEAPEL--PVIAFMEQG 77
            +E  KV   + E  + ++ P  ++   +E   P E   N+   G+  E+  P  + +E  
Sbjct: 814  AETEKVEPVVTEVDENQSEPGIQSFKQEEEVKPKEETENQEQTGDRVEVHPPKDSDIEAV 873

Query: 78   IKEEYDAAEGEVIQKESLEVLQN-VEEQASEIVSLVPKAQDESSVMAECGKGPADAEEEE 137
             +     +E  ++++E+++ L N VEE+ SE          +  V  E G+   + E E+
Sbjct: 874  KETNNSGSEAILVKEENIDPLSNGVEEKLSE----------QLQVGEEVGEIIKEVEPEQ 933

Query: 138  -TEADKEAENNVPEQPVEPQNK-EAEAIEVLPMEEMIGTAEASTQKEQAVDKELEEVIAK 197
             TE  + +   + E+  EP     A  ++  P   +  + E   +K    D + E V+A 
Sbjct: 934  ATEKTEGSNGTIKEEETEPNTTVNAAQVQTTPANLVEPSPEVE-EKIVVEDGKKEVVVAA 993

Query: 198  EISIPTEAPKEKEQARAESREVIEPSTEFVSAEKEPSCV--VAESAETPLKVIAEDTYET 257
            E     + P+  +  +  SRE  E  T  + A +  + V  ++++   P++      +E 
Sbjct: 994  EDE--KKEPEASDAVQVSSREQNEAKTATIEAGETETKVEEISKAVNEPVRETLASKFEK 1053

Query: 258  QPVVAGKSLVDLIAETKIEEPQVAGLGAANVSELQVKDEQIVSTKGSNPTQKHSHNLLSK 317
                  ++ VD + + +IEEP    + +   ++     + +     + P QK S+N+++K
Sbjct: 1054 DEEETIQNGVDNLEKERIEEPVKTEVESTKENDTTTISKDLPKETPAKPAQKQSNNIIAK 1113

Query: 318  LKHSLVKARKAIIGKSPTSKTLSSQPRDDIKVK 343
            +K SLVKA+KAI GKSP+SK LSS P+ DIKVK
Sbjct: 1114 VKQSLVKAKKAITGKSPSSKNLSSDPKGDIKVK 1133

[Close]

BLAST of CmaCh10G011860 vs. TAIR10
Match: AT3G05900.1 (AT3G05900.1 neurofilament protein-related)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-08
Identity = 103/357 (28.85%), Postives = 176/357 (49.30%), Query Frame = 1


Query: 24  TEQIEETGKGENLP--------TSEAKAVDEPPIPERPSNEPIVGEAPE--LPVIAFMEQ 83
           T+ I+ET    + P        T E   VDEP   E+PS E     +PE  +P+    + 
Sbjct: 328 TDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPS-ESSAALSPEKVVPINQDSDT 387

Query: 84  GIKEEYD---AAEGEVIQKESLEVLQNVEEQASEIVS-----------LVPKAQD----E 143
             KEE +   AA  +VI+K   E    V+E + +  +            VP  QD     
Sbjct: 388 KPKEETEGDAAAPADVIEKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEP 447

Query: 144 SSVMAECGKGPADAEEEETEADKEAENNVPEQPVEPQNKEAEAIEVLPMEEMIGTAEAS- 203
                E    PAD  E+    +K    +V E+P + + K +E+   L  E+++ T + S 
Sbjct: 448 KKETEEDVSSPADIIEKAITEEK----HVVEEPSKDE-KTSESGSALSPEKVVPTNQDSD 507

Query: 204 TQKEQAVDKE-------LEEVIAKEISIPTEAPKEKEQARAESREVIEP-STEFVSAEKE 263
           T+ ++  + +       +E+ I  E  +  E  K++++  +E+++V+   + E  + +K+
Sbjct: 508 TEPKKETEGDVPSPADVIEKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKD 567

Query: 264 PSCVVAES-AETPLKVIAEDTYETQPVVAGKSLVDLIAETKIEEPQVAGLGAANVSELQV 323
               VAE  +E  LK    DT   +   A     + I E   E  + A + A  + E + 
Sbjct: 568 TDTPVAEGKSEETLK--ETDTESVEKEAAANKQEEPITEKVAEVVETAPV-AKEIDEAKQ 627

Query: 324 KDEQIVSTKGSNPTQKHSHNLLSKLKHSLVKARKAIIGKSPTSKTLSS-QPRDDIKV 342
           + E  V+TK +   QKHS++++SK+K SLVKA+KAIIG+SP+SKT+++ +P+++IKV
Sbjct: 628 QPE--VTTKEAPAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEEIKV 673

[Close]

BLAST of CmaCh10G011860 vs. NCBI nr
Match: gi|659099258|ref|XP_008450509.1| (PREDICTED: titin-like isoform X1 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 117/386 (30.31%), Postives = 178/386 (46.11%), Query Frame = 1


Query: 15   KKFSEAVKVTEQIEETGKGENLPTSE--AKAVDEPPIPERPSNEPIVGEAPELPVIAFME 74
            K  SE+++  +  E+  +  +   SE  AK +DE  +P +    P+ G     PVI   E
Sbjct: 927  KDSSESIQPPKNKEQPNEVPHEKESEVIAKDIDESLVPSKDMEGPVEG----FPVIGSEE 986

Query: 75   QGIKEEYDAAEGEVIQKESLEVLQNVEEQASEIVSLVPKAQDESSVMAECGKGPADAEEE 134
             G KE      G  +  E +E L+  +      V+ V   ++E S +        +  E 
Sbjct: 987  MGAKE----VSGSTLGSEEIEKLEPCK------VTEVRDGKEELSEITNHVHN--EYVEV 1046

Query: 135  ETEADKEAENNVPEQPVEPQNKEAEAIEVLPMEEMIGTAEASTQKEQAV---DKELEEVI 194
            ETE   + EN   ++P+   N     + V  + +     +  + K+ +V    +   +++
Sbjct: 1047 ETEQTVKGENVKDQKPLAIGNDSTPPLGVGQIHKEEEQCKGQSDKQDSVYHRGQPSVDLV 1106

Query: 195  AKEISIPTEAPKEKEQARAESREVIE-------PSTEFVSAEKEPSCVVAESAET----- 254
            A +   P    KE E+  + + +V+        P+ E V  E E   +  E A+      
Sbjct: 1107 APDF--PPHDVKEDEKKESSNIDVVAQLSVEEAPAMEKVGEENEEKGMKTEKADEATHEN 1166

Query: 255  ------PLKVIAEDTYETQPVVAGKSL--------VDLIAETKIEEP----QVAGLGAAN 314
                  P + +A   YET  VVAGKS+         DLIAETK+EE     ++A +   N
Sbjct: 1167 IQNITLPREEVAPRDYETDVVVAGKSIDDQKAGEVADLIAETKVEESITDEKLAPVETVN 1226

Query: 315  VS-----------ELQVKDEQIVSTKG------------SNPTQKHSHNLLSKLKHSLVK 343
                         EL+VKD++ V  +             S P+ KHSHN+LSK+K SLVK
Sbjct: 1227 AQVNETPKEPQELELEVKDKENVREEAEVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVK 1286

[Close]

BLAST of CmaCh10G011860 vs. NCBI nr
Match: gi|659099260|ref|XP_008450510.1| (PREDICTED: titin-like isoform X2 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 117/386 (30.31%), Postives = 178/386 (46.11%), Query Frame = 1


Query: 15   KKFSEAVKVTEQIEETGKGENLPTSE--AKAVDEPPIPERPSNEPIVGEAPELPVIAFME 74
            K  SE+++  +  E+  +  +   SE  AK +DE  +P +    P+ G     PVI   E
Sbjct: 920  KDSSESIQPPKNKEQPNEVPHEKESEVIAKDIDESLVPSKDMEGPVEG----FPVIGSEE 979

Query: 75   QGIKEEYDAAEGEVIQKESLEVLQNVEEQASEIVSLVPKAQDESSVMAECGKGPADAEEE 134
             G KE      G  +  E +E L+  +      V+ V   ++E S +        +  E 
Sbjct: 980  MGAKE----VSGSTLGSEEIEKLEPCK------VTEVRDGKEELSEITNHVHN--EYVEV 1039

Query: 135  ETEADKEAENNVPEQPVEPQNKEAEAIEVLPMEEMIGTAEASTQKEQAV---DKELEEVI 194
            ETE   + EN   ++P+   N     + V  + +     +  + K+ +V    +   +++
Sbjct: 1040 ETEQTVKGENVKDQKPLAIGNDSTPPLGVGQIHKEEEQCKGQSDKQDSVYHRGQPSVDLV 1099

Query: 195  AKEISIPTEAPKEKEQARAESREVIE-------PSTEFVSAEKEPSCVVAESAET----- 254
            A +   P    KE E+  + + +V+        P+ E V  E E   +  E A+      
Sbjct: 1100 APDF--PPHDVKEDEKKESSNIDVVAQLSVEEAPAMEKVGEENEEKGMKTEKADEATHEN 1159

Query: 255  ------PLKVIAEDTYETQPVVAGKSL--------VDLIAETKIEEP----QVAGLGAAN 314
                  P + +A   YET  VVAGKS+         DLIAETK+EE     ++A +   N
Sbjct: 1160 IQNITLPREEVAPRDYETDVVVAGKSIDDQKAGEVADLIAETKVEESITDEKLAPVETVN 1219

Query: 315  VS-----------ELQVKDEQIVSTKG------------SNPTQKHSHNLLSKLKHSLVK 343
                         EL+VKD++ V  +             S P+ KHSHN+LSK+K SLVK
Sbjct: 1220 AQVNETPKEPQELELEVKDKENVREEAEVPKVNDKKEVPSKPSHKHSHNILSKVKQSLVK 1279

[Close]

BLAST of CmaCh10G011860 vs. NCBI nr
Match: gi|778662174|ref|XP_004135572.2| (PREDICTED: nestin-like isoform X2 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 70/150 (46.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 93  EVLQNVEEQASEIVSLVPKAQDES--SVMAECGKGPADAEEE--------ETEADKEAEN 152
           EV + VE  + E     PK  D +  SV+    KGP DAEEE        E EADKE E 
Sbjct: 222 EVAEKVEMNSEEAEENKPKISDNTILSVVENFSKGPTDAEEEPVTECVSVEKEADKEPET 281

Query: 153 NVPEQPVEPQNKEAEAIEVLPMEEMI--------GTAEASTQKEQAVD----KELEEVIA 212
           ++P++P E   KEA AIEV+P+EE+I           E  T K Q V+    K LEEVIA
Sbjct: 282 DIPKEPAELPKKEAPAIEVVPLEELIERVAKENLERVETPTDKGQPVELHPFKALEEVIA 341

Query: 213 KEISIPTEAPKEKEQ-----ARAESREVIE 216
           KEISIPTE PK+K+Q     A  ESRE+IE
Sbjct: 342 KEISIPTEVPKDKQQGSEIDAEQESRELIE 371

[Close]

BLAST of CmaCh10G011860 vs. NCBI nr
Match: gi|700210897|gb|KGN65993.1| (hypothetical protein Csa_1G560760 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 70/150 (46.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 93  EVLQNVEEQASEIVSLVPKAQDES--SVMAECGKGPADAEEE--------ETEADKEAEN 152
           EV + VE  + E     PK  D +  SV+    KGP DAEEE        E EADKE E 
Sbjct: 222 EVAEKVEMNSEEAEENKPKISDNTILSVVENFSKGPTDAEEEPVTECVSVEKEADKEPET 281

Query: 153 NVPEQPVEPQNKEAEAIEVLPMEEMI--------GTAEASTQKEQAVD----KELEEVIA 212
           ++P++P E   KEA AIEV+P+EE+I           E  T K Q V+    K LEEVIA
Sbjct: 282 DIPKEPAELPKKEAPAIEVVPLEELIERVAKENLERVETPTDKGQPVELHPFKALEEVIA 341

Query: 213 KEISIPTEAPKEKEQ-----ARAESREVIE 216
           KEISIPTE PK+K+Q     A  ESRE+IE
Sbjct: 342 KEISIPTEVPKDKQQGSEIDAEQESRELIE 371

[Close]

BLAST of CmaCh10G011860 vs. NCBI nr
Match: gi|778662171|ref|XP_011659466.1| (PREDICTED: nestin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 70/150 (46.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 93  EVLQNVEEQASEIVSLVPKAQDES--SVMAECGKGPADAEEE--------ETEADKEAEN 152
           EV + VE  + E     PK  D +  SV+    KGP DAEEE        E EADKE E 
Sbjct: 229 EVAEKVEMNSEEAEENKPKISDNTILSVVENFSKGPTDAEEEPVTECVSVEKEADKEPET 288

Query: 153 NVPEQPVEPQNKEAEAIEVLPMEEMI--------GTAEASTQKEQAVD----KELEEVIA 212
           ++P++P E   KEA AIEV+P+EE+I           E  T K Q V+    K LEEVIA
Sbjct: 289 DIPKEPAELPKKEAPAIEVVPLEELIERVAKENLERVETPTDKGQPVELHPFKALEEVIA 348

Query: 213 KEISIPTEAPKEKEQ-----ARAESREVIE 216
           KEISIPTE PK+K+Q     A  ESRE+IE
Sbjct: 349 KEISIPTEVPKDKQQGSEIDAEQESRELIE 378

The following BLAST results are available for this feature:

BLAST of CmaCh10G011860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G011860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW81_CUCSA	3.4e-12	46.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560760 PE=4 SV=1	[more]
A0A0A0LYU4_CUCSA	4.4e-12	30.47	GRIP and coiled-coil domain-containing protein OS=Cucumis sativus GN=Csa_1G56075...	[more]
G7IAC6_MEDTR	3.6e-06	26.13	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]
A0A072VNB6_MEDTR	3.6e-06	26.13	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g084990 PE=4 SV=1	[more]

BLAST of CmaCh10G011860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05900.1	5.9e-08	28.85	neurofilament protein-related	[more]

BLAST of CmaCh10G011860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099258\|ref\|XP_008450509.1\|	4.4e-13	30.31	PREDICTED: titin-like isoform X1 [Cucumis melo]	[more]
gi\|659099260\|ref\|XP_008450510.1\|	4.4e-13	30.31	PREDICTED: titin-like isoform X2 [Cucumis melo]	[more]
gi\|778662174\|ref\|XP_004135572.2\|	4.8e-12	46.67	PREDICTED: nestin-like isoform X2 [Cucumis sativus]	[more]
gi\|700210897\|gb\|KGN65993.1\|	4.8e-12	46.67	hypothetical protein Csa_1G560760 [Cucumis sativus]	[more]
gi\|778662171\|ref\|XP_011659466.1\|	4.8e-12	46.67	PREDICTED: nestin-like isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G011860.1	CmaCh10G011860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G011860	Cucsa.050940	Cucumber (Gy14) v1	cgycmaB0053
CmaCh10G011860	Cla005141	Watermelon (97103) v1	cmawmB047
CmaCh10G011860	Csa1G560750	Cucumber (Chinese Long) v2	cmacuB053
CmaCh10G011860	MELO3C015237	Melon (DHL92) v3.5.1	cmameB068
CmaCh10G011860	ClCG03G017920	Watermelon (Charleston Gray)	cmawcgB055
CmaCh10G011860	CSPI01G25680	Wild cucumber (PI 183967)	cmacpiB054
CmaCh10G011860	CmoCh10G012640	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G011860	Lsi06G000220	Bottle gourd (USVL1VR-Ls)	cmalsiB076
CmaCh10G011860	Cp4.1LG04g00060	Cucurbita pepo (Zucchini)	cmacpeB097
CmaCh10G011860	MELO3C015237.2	Melon (DHL92) v3.6.1	cmamedB071
CmaCh10G011860	CsaV3_1G038080	Cucumber (Chinese Long) v3	cmacucB0062
CmaCh10G011860	Cla97C03G068320	Watermelon (97103) v2	cmawmbB061
CmaCh10G011860	Bhi02G001838	Wax gourd	cmawgoB0079
CmaCh10G011860	CsGy1G025000	Cucumber (Gy14) v2	cgybcmaB008
CmaCh10G011860	Carg27770	Silver-seed gourd	carcmaB0421

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G011860	Cucumber (Gy14) v1	cgycmaB0176
CmaCh10G011860	Cucurbita moschata (Rifu)	cmacmoB079
CmaCh10G011860	Cucumber (Chinese Long) v2	cmacuB074
CmaCh10G011860	Watermelon (Charleston Gray)	cmawcgB053