CmoCh10G001160 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAATTTGAACTTTGAAGCAAATTTGGCGGGCGAACGAGTGTCAAGCAACTTCTTTGCTCTGTAAAAGAATGGAGAACAAGGCTGAAGAATCTGTTTGTGCGAGAATGGAGTCACTTCGAATTGTTCGTGAAAAGGAAATTGCAGTTGAGCAACAAAAAATGGAGTCCTTCGCGGATTCATTTCGCAAATCTCTGGAATCGATCACTGCACGGTCCCGAGAAAATGCCCGAAGTCAAGGTGAGCCATCTATTCTCTTCAAATTATTCGGGAAAGAAGTGGATGCGATACCGTTATATTGTGGCGAGTTCAATAATGTAATCGGTAATAGAATTGTTTGTGAAGTCACCGATAGGGTTTTGAGATTGGTAGCGTACAAGACTCAAAAATGGATGTAATTCTAGGGGACTGAGTAGGTTTAGGTTCAGGAGTGGCCAAGTTGATTGATTTTTGAATTTTCAGGAAAACTGGGGGAACTAAAAGCGAGGTTGAGGGAGGCGGAAGATGAACTGGTTAAAGCTCTTGCAGGTATGAGCTATGATTATGCTAATTTCCTCTAACGCTGCATGAGTAGAATACACTATTTCGTTGAATCGACTGAGGCTGCATGCTAATTGTAAGGCTTATTTCCATTATAATTGCGTGTTTTTGTAGTCAAGACTCGTAAAGAGGCTAAACGCCTCGCACTCACGGACTCCCTTGCAACTTCAAAATCTAGAATTGAAGAGCTCAGAAACAATTTTCAAGACTGCAAAGCAAGGAGGGATGAATATTCAACAACTATATCTCGGCAATCCTTAGGTGAACTTAATTTATTTTACGAGTGCTCACTCTTACATCTGTTTTTGCTAGCCCTTAAAAACTGATTACTTCTCTTTCTTTCCAATGCCATCAAAAGCTTTATCTCCATATGAACACAAGGAACCCCAAGAGAGTGATTGTAGAAATGAAATTCAAGAGGCTATTTCTTGGTACAATAGAGTTCTTGATTTCCATATTGAAGGAGGGCATGGTATGATAATTTGAGTTAGTTGTTTTTTAGTATCCTTTATATTTTTTGTGAATTCTTGAGATTAATTTCTCGACAACTTCTCTCGGTTTTTCAGGGGTAAACTTCTCTTTCAAGAAAATCAATGTAGACGATCCTGATAAAGAATATTCTTTTACAATCCGTCATGCAAATGATACTTATACGTGTAAGTTATGTGCACTTAATGTATGTTCATTTTTCATGTTCTTGATCTTCTGACAACCTTACTTTTTCAGTGTTAGATTGTAACCCATCCTTGCAAGGTATTGAAGAGTTGATACATGAATTAAATAATACAAATGGGTTATTCAAGTTTGTCAGGATCATGAGACGGAGGTTCCAGGAGGCTGCTGCAGAAGGTGTGCGATGAATTTTGAACTTTTTGCTTGAAAGTGTGTTATTCACTGCACAAAAAACTCATTGGTACTTAATAGACATACTACCTGAAGCACCATGTTTTGTGCTTCTTGCAGTTTGTTAGATTGAACTTGTTCTGCATTAATAGTTTGTTATATTTTTGTTATTCAACAGGAGTTGGGGCCCAAGCATTGTCTCTGCATCAAGGCTCGACGATAATCTCCATGTCAGCTCCAGGTTTGACATCATCATTGGACAGAAGTGAATCTTCAACTGAAGAAATCGATAACCAGGTTCAACTCGAGGAAACTAACAAACCTTCTAAGAAAACTTCATCCGGAAAGAAACCAGCTATCCAATCCATTGGATCTGCATTTTCTCTGCGTCGAACTCCTCGTTTCAAGGTATATTCAATTTAATGTTTGGTGTCTGGTGCTTATGATTTAAGATTCTCTGGTATATGATATTACGAGAATACTGTAACATCTATGCATTACAAGTTTAATTTTTTGTTTTATGCAAATTTCAAAATGTTATGCAAGAGAGAATTTGTAATGAAATGAATCACGTATGGCAGGTCAAGAAATAAGGCTCCGTTGATGATCTTAACCTTTTTCTTCCATGACATGAAGTATTATGGGGTCCTGACTTCAACTTTTGCCAGAACTTCTCTGACTACTGTGAAGGCTCCATATCTGAAAATTAAAGTTGAAGGAGGAGTAATCACATGACCTGTTGTATGTTTTTTATATCTAATTTGTTTTTATGTGCATTATTTTACACGATGTTATGATTTGATGTAATGCGTAGGGTGATTTTCCCGAAAGTACCCCGAGTGCTAGTACTTTGTATCCATCTGATCCACATGCAACTTTTCATGATCATCGAACTTAAATGTAAGATTGTGCATTGGATAATTAAATAATTATGAAAGCTCAAAGGTGC GAATTTGAACTTTGAAGCAAATTTGGCGGGCGAACGAGTGTCAAGCAACTTCTTTGCTCTGTAAAAGAATGGAGAACAAGGCTGAAGAATCTGTTTGTGCGAGAATGGAGTCACTTCGAATTGTTCGTGAAAAGGAAATTGCAGTTGAGCAACAAAAAATGGAGTCCTTCGCGGATTCATTTCGCAAATCTCTGGAATCGATCACTGCACGGTCCCGAGAAAATGCCCGAAGTCAAGGAAAACTGGGGGAACTAAAAGCGAGGTTGAGGGAGGCGGAAGATGAACTGGTTAAAGCTCTTGCAGTCAAGACTCGTAAAGAGGCTAAACGCCTCGCACTCACGGACTCCCTTGCAACTTCAAAATCTAGAATTGAAGAGCTCAGAAACAATTTTCAAGACTGCAAAGCAAGGAGGGATGAATATTCAACAACTATATCTCGGCAATCCTTAGCTTTATCTCCATATGAACACAAGGAACCCCAAGAGAGTGATTGTAGAAATGAAATTCAAGAGGCTATTTCTTGGTACAATAGAGTTCTTGATTTCCATATTGAAGGAGGGCATGGGGTAAACTTCTCTTTCAAGAAAATCAATGTAGACGATCCTGATAAAGAATATTCTTTTACAATCCGTCATGCAAATGATACTTATACGTTGTTAGATTGTAACCCATCCTTGCAAGGTATTGAAGAGTTGATACATGAATTAAATAATACAAATGGGTTATTCAAGTTTGTCAGGATCATGAGACGGAGGTTCCAGGAGGCTGCTGCAGAAGGAGTTGGGGCCCAAGCATTGTCTCTGCATCAAGGCTCGACGATAATCTCCATGTCAGCTCCAGGTTTGACATCATCATTGGACAGAAGTGAATCTTCAACTGAAGAAATCGATAACCAGGTTCAACTCGAGGAAACTAACAAACCTTCTAAGAAAACTTCATCCGGAAAGAAACCAGCTATCCAATCCATTGGATCTGCATTTTCTCTGCGTCGAACTCCTCGTTTCAAGGTCAAGAAATAAGGCTCCGTTGATGATCTTAACCTTTTTCTTCCATGACATGAAGTATTATGGGGTCCTGACTTCAACTTTTGCCAGAACTTCTCTGACTACTGTGAAGGCTCCATATCTGAAAATTAAAGTTGAAGGAGGAGTAATCACATGACCTGTTGTATGTTTTTTATATCTAATTTGTTTTTATGTGCATTATTTTACACGATGTTATGATTTGATGTAATGCGTAGGGTGATTTTCCCGAAAGTACCCCGAGTGCTAGTACTTTGTATCCATCTGATCCACATGCAACTTTTCATGATCATCGAACTTAAATGTAAGATTGTGCATTGGATAATTAAATAATTATGAAAGCTCAAAGGTGC ATGGAGAACAAGGCTGAAGAATCTGTTTGTGCGAGAATGGAGTCACTTCGAATTGTTCGTGAAAAGGAAATTGCAGTTGAGCAACAAAAAATGGAGTCCTTCGCGGATTCATTTCGCAAATCTCTGGAATCGATCACTGCACGGTCCCGAGAAAATGCCCGAAGTCAAGGAAAACTGGGGGAACTAAAAGCGAGGTTGAGGGAGGCGGAAGATGAACTGGTTAAAGCTCTTGCAGTCAAGACTCGTAAAGAGGCTAAACGCCTCGCACTCACGGACTCCCTTGCAACTTCAAAATCTAGAATTGAAGAGCTCAGAAACAATTTTCAAGACTGCAAAGCAAGGAGGGATGAATATTCAACAACTATATCTCGGCAATCCTTAGCTTTATCTCCATATGAACACAAGGAACCCCAAGAGAGTGATTGTAGAAATGAAATTCAAGAGGCTATTTCTTGGTACAATAGAGTTCTTGATTTCCATATTGAAGGAGGGCATGGGGTAAACTTCTCTTTCAAGAAAATCAATGTAGACGATCCTGATAAAGAATATTCTTTTACAATCCGTCATGCAAATGATACTTATACGTTGTTAGATTGTAACCCATCCTTGCAAGGTATTGAAGAGTTGATACATGAATTAAATAATACAAATGGGTTATTCAAGTTTGTCAGGATCATGAGACGGAGGTTCCAGGAGGCTGCTGCAGAAGGAGTTGGGGCCCAAGCATTGTCTCTGCATCAAGGCTCGACGATAATCTCCATGTCAGCTCCAGGTTTGACATCATCATTGGACAGAAGTGAATCTTCAACTGAAGAAATCGATAACCAGGTTCAACTCGAGGAAACTAACAAACCTTCTAAGAAAACTTCATCCGGAAAGAAACCAGCTATCCAATCCATTGGATCTGCATTTTCTCTGCGTCGAACTCCTCGTTTCAAGGTCAAGAAATAA
BLAST of CmoCh10G001160 vs. Swiss-Prot
Match: SPC25_SCHPO (Kinetochore protein spc25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc25 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.6e-06 Identity = 52/216 (24.07%), Postives = 102/216 (47.22%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TrEMBL
Match: A0A0A0LU84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004230 PE=4 SV=1) HSP 1 Score: 448.4 bits (1152), Expect = 7.4e-123 Identity = 246/316 (77.85%), Postives = 270/316 (85.44%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TrEMBL
Match: D7SHM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08910 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80 Identity = 175/318 (55.03%), Postives = 235/318 (73.90%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TrEMBL
Match: A0A067FQ96_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019175mg PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 2.3e-79 Identity = 174/345 (50.43%), Postives = 237/345 (68.70%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TrEMBL
Match: V4TT92_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020950mg PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 3.0e-79 Identity = 175/345 (50.72%), Postives = 236/345 (68.41%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TrEMBL
Match: A0A061FUW7_THECC (Kinetochore protein spc25, putative OS=Theobroma cacao GN=TCM_012214 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76 Identity = 162/294 (55.10%), Postives = 216/294 (73.47%), Query Frame = 1
BLAST of CmoCh10G001160 vs. TAIR10
Match: AT3G48210.1 (AT3G48210.1 Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255)) HSP 1 Score: 211.5 bits (537), Expect = 7.8e-55 Identity = 128/305 (41.97%), Postives = 195/305 (63.93%), Query Frame = 1
BLAST of CmoCh10G001160 vs. NCBI nr
Match: gi|659129119|ref|XP_008464538.1| (PREDICTED: uncharacterized protein LOC103502389 [Cucumis melo]) HSP 1 Score: 453.4 bits (1165), Expect = 3.3e-124 Identity = 250/316 (79.11%), Postives = 273/316 (86.39%), Query Frame = 1
BLAST of CmoCh10G001160 vs. NCBI nr
Match: gi|449440654|ref|XP_004138099.1| (PREDICTED: uncharacterized protein LOC101205655 [Cucumis sativus]) HSP 1 Score: 448.4 bits (1152), Expect = 1.1e-122 Identity = 246/316 (77.85%), Postives = 270/316 (85.44%), Query Frame = 1
BLAST of CmoCh10G001160 vs. NCBI nr
Match: gi|731425081|ref|XP_010663127.1| (PREDICTED: kinetochore protein Spc25 [Vitis vinifera]) HSP 1 Score: 308.1 bits (788), Expect = 1.7e-80 Identity = 175/318 (55.03%), Postives = 235/318 (73.90%), Query Frame = 1
BLAST of CmoCh10G001160 vs. NCBI nr
Match: gi|568845981|ref|XP_006476842.1| (PREDICTED: kinetochore protein spc25 isoform X2 [Citrus sinensis]) HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79 Identity = 175/345 (50.72%), Postives = 237/345 (68.70%), Query Frame = 1
BLAST of CmoCh10G001160 vs. NCBI nr
Match: gi|641850661|gb|KDO69533.1| (hypothetical protein CISIN_1g019175mg [Citrus sinensis]) HSP 1 Score: 303.9 bits (777), Expect = 3.3e-79 Identity = 174/345 (50.43%), Postives = 237/345 (68.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |