CmoCh09G012730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Succinate dehydrogenase assembly factor 1, mitochondrial
Location	Cmo_Chr09 : 11150025 .. 11150285 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCAAATGGAATCGGTTGTCGCCGCTGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCTCTGCAACCGTTCGGGTATCAAGATTCTGA

mRNA sequence

ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCAAATGGAATCGGTTGTCGCCGCTGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCTCTGCAACCGTTCGGGTATCAAGATTCTGA

Coding sequence (CDS)

ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCAAATGGAATCGGTTGTCGCCGCTGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCTCTGCAACCGTTCGGGTATCAAGATTCTGA

Homology

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BLAST of CmoCh09G012730 vs. Swiss-Prot
Match: SDHF1_RAT (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67
          +LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RR
Sbjct: 3  RLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-SLPRSDVLRIEYLYRR 62

Query: 68 GNKQLDQLKSSATVRVSRF 87
          G +QL  L+S     +  F
Sbjct: 63 GRRQLQLLRSGHATAMGTF 75

[Close]

BLAST of CmoCh09G012730 vs. Swiss-Prot
Match: SDHF1_BOVIN (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus GN=SDHAF1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-06
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 10 SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGN 69
          S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG 
Sbjct: 5  SRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-CLPRSDVLRIEYLYRRGR 64

Query: 70 KQLDQLKSSATVRVSRF 87
          +QL  L+S     +  F
Sbjct: 65 RQLQMLRSGHATAMGAF 75

[Close]

BLAST of CmoCh09G012730 vs. Swiss-Prot
Match: SDHF1_HUMAN (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens GN=SDHAF1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 10 SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGN 69
          S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG 
Sbjct: 5  SRLQRQVLSLYRDLLRAGRGKPGAEAR-----VRAEFRQHA-GLPRSDVLRIEYLYRRGR 64

Query: 70 KQLDQLKSSATVRVSRF 87
          +QL  L+S     +  F
Sbjct: 65 RQLQLLRSGHATAMGAF 75

[Close]

BLAST of CmoCh09G012730 vs. Swiss-Prot
Match: SDHF1_MOUSE (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus GN=Sdhaf1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-06
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 10 SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGN 69
          S LQ+QVLSLYR  LRA R     + R     V AEFR++A  + R + + IEYL RRG 
Sbjct: 5  SRLQRQVLSLYRELLRAGRGTPGAEAR-----VRAEFRQHA-SLPRTDVLRIEYLYRRGR 64

Query: 70 KQLDQLKSSATVRVSRF 87
          +QL  L+S     +  F
Sbjct: 65 RQLQLLRSGHATAMGTF 75

[Close]

BLAST of CmoCh09G012730 vs. TrEMBL
Match: A0A0A0KST3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649345 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67
          KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VA EFRRNAKQIDRKNFI+IEYLLRR
Sbjct: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRR 62

Query: 68 GNKQLDQLKSSATVRVS 85
          GNKQLDQLKS ATVR+S
Sbjct: 63 GNKQLDQLKSPATVRLS 79

[Close]

BLAST of CmoCh09G012730 vs. TrEMBL
Match: A0A0B0PRI9_GOSAR (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Gossypium arboreum GN=F383_13195 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIH 60
          MG S G KLSG+Q+QVLSLYR FLRAARSK  EDRRQ+ES+V+AEFRRN+KQ+DRKNF+H
Sbjct: 1  MGASKGQKLSGMQRQVLSLYRGFLRAARSKPTEDRRQIESIVSAEFRRNSKQVDRKNFLH 60

Query: 61 IEYLLRRGNKQLDQLKSSATVRVS 85
          IEYLLRRG KQLDQLKS  T+ +S
Sbjct: 61 IEYLLRRGKKQLDQLKSPDTIGLS 84

[Close]

BLAST of CmoCh09G012730 vs. TrEMBL
Match: W9RV94_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004472 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-26
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIH 60
          M  S GP+LSGLQKQVLSLYR FLRAAR KSAEDRR++ES V+AEFRRNAKQID KNF+H
Sbjct: 1  MAPSGGPRLSGLQKQVLSLYRGFLRAARLKSAEDRRRIESTVSAEFRRNAKQIDHKNFLH 60

Query: 61 IEYLLRRGNKQLDQLKSSATVRVS 85
          IEYLLRRG KQLDQL+S  T+ +S
Sbjct: 61 IEYLLRRGKKQLDQLRSPDTIGLS 84

[Close]

BLAST of CmoCh09G012730 vs. TrEMBL
Match: K4CQ97_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-26
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MGISSGPK-LSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFI 60
          MG SSGPK LSG+QKQ L+LYR FLRAARSK AE+RRQ+ESVV+ EFR+N+KQ+DRKNFI
Sbjct: 1  MGASSGPKRLSGMQKQALALYRGFLRAARSKPAEERRQIESVVSTEFRKNSKQVDRKNFI 60

Query: 61 HIEYLLRRGNKQLDQLKSSATVRVS 85
          +IEYLLRRGNKQLDQLKS  TV +S
Sbjct: 61 YIEYLLRRGNKQLDQLKSPDTVGLS 85

[Close]

BLAST of CmoCh09G012730 vs. TrEMBL
Match: M0ZPI3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401002024 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = 1


Query: 1  MGISSGPK-LSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFI 60
          MG SSGP+ LSG+QKQ L+LYR FLRAARSK AE+RRQ+ESVV++EFR+N+KQ+DRKNFI
Sbjct: 1  MGASSGPRRLSGMQKQALALYRGFLRAARSKPAEERRQIESVVSSEFRKNSKQVDRKNFI 60

Query: 61 HIEYLLRRGNKQLDQLKSSATVRVS 85
          +IEYLLRRGNKQLDQLKS  TV +S
Sbjct: 61 YIEYLLRRGNKQLDQLKSPDTVGLS 85

[Close]

BLAST of CmoCh09G012730 vs. TAIR10
Match: AT2G39725.1 (AT2G39725.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-23
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67
          KLSG+QKQVLSLYR FLRAARS+  EDR+++E +V+ EFR N+K++DRKNF +IEYLLR 
Sbjct: 5  KLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLRL 64

Query: 68 GNKQLDQLKSSATVRVS 85
          G KQLDQLKS A V +S
Sbjct: 65 GTKQLDQLKSPAIVSLS 81

[Close]

BLAST of CmoCh09G012730 vs. NCBI nr
Match: gi|659119317|ref|XP_008459591.1| (PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67
          KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VAAEFRRNAKQIDRKNFI+IEYLLRR
Sbjct: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62

Query: 68 GNKQLDQLKSSATVRVS 85
          GNKQLDQLKS ATVR+S
Sbjct: 63 GNKQLDQLKSPATVRLS 79

[Close]

BLAST of CmoCh09G012730 vs. NCBI nr
Match: gi|778707909|ref|XP_011656085.1| (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67
          KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VA EFRRNAKQIDRKNFI+IEYLLRR
Sbjct: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRR 62

Query: 68 GNKQLDQLKSSATVRVS 85
          GNKQLDQLKS ATVR+S
Sbjct: 63 GNKQLDQLKSPATVRLS 79

[Close]

BLAST of CmoCh09G012730 vs. NCBI nr
Match: gi|728849640|gb|KHG29083.1| (Succinate dehydrogenase assembly factor 1, mitochondrial [Gossypium arboreum])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIH 60
          MG S G KLSG+Q+QVLSLYR FLRAARSK  EDRRQ+ES+V+AEFRRN+KQ+DRKNF+H
Sbjct: 1  MGASKGQKLSGMQRQVLSLYRGFLRAARSKPTEDRRQIESIVSAEFRRNSKQVDRKNFLH 60

Query: 61 IEYLLRRGNKQLDQLKSSATVRVS 85
          IEYLLRRG KQLDQLKS  T+ +S
Sbjct: 61 IEYLLRRGKKQLDQLKSPDTIGLS 84

[Close]

BLAST of CmoCh09G012730 vs. NCBI nr
Match: gi|703138968|ref|XP_010106864.1| (hypothetical protein L484_004472 [Morus notabilis])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIH 60
          M  S GP+LSGLQKQVLSLYR FLRAAR KSAEDRR++ES V+AEFRRNAKQID KNF+H
Sbjct: 1  MAPSGGPRLSGLQKQVLSLYRGFLRAARLKSAEDRRRIESTVSAEFRRNAKQIDHKNFLH 60

Query: 61 IEYLLRRGNKQLDQLKSSATVRVS 85
          IEYLLRRG KQLDQL+S  T+ +S
Sbjct: 61 IEYLLRRGKKQLDQLRSPDTIGLS 84

[Close]

BLAST of CmoCh09G012730 vs. NCBI nr
Match: gi|697155883|ref|XP_009586684.1| (PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 63/84 (75.00%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 1  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIH 60
          MG SSGP+LSG+QKQVL+LYR FLRAARSK  E+RRQ+ES+V+AEF +N+KQ+DRKNFI+
Sbjct: 1  MGASSGPRLSGMQKQVLALYRGFLRAARSKPVEERRQIESIVSAEFHKNSKQVDRKNFIY 60

Query: 61 IEYLLRRGNKQLDQLKSSATVRVS 85
          IEYLLRRG KQLDQLKS  TV +S
Sbjct: 61 IEYLLRRGKKQLDQLKSPDTVGLS 84

The following BLAST results are available for this feature:

BLAST of CmoCh09G012730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDHF1_RAT	2.0e-07	45.57	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN...	[more]
SDHF1_BOVIN	1.0e-06	45.45	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus GN=SDHAF1...	[more]
SDHF1_HUMAN	1.3e-06	45.45	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens GN=SDHA...	[more]
SDHF1_MOUSE	5.0e-06	44.16	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus GN=Sdha...	[more]

BLAST of CmoCh09G012730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KST3_CUCSA	1.2e-27	88.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649345 PE=3 SV=1	[more]
A0A0B0PRI9_GOSAR	1.0e-26	76.19	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Gossypium arboreum G...	[more]
W9RV94_9ROSA	5.1e-26	77.38	Uncharacterized protein OS=Morus notabilis GN=L484_004472 PE=3 SV=1	[more]
K4CQ97_SOLLC	6.7e-26	77.65	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
M0ZPI3_SOLTU	1.1e-25	76.47	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401002024 PE=3 SV=1	[more]

BLAST of CmoCh09G012730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39725.1	4.7e-23	68.83	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CmoCh09G012730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119317\|ref\|XP_008459591.1\|	6.0e-28	89.61	PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Cuc...	[more]
gi\|778707909\|ref\|XP_011656085.1\|	1.8e-27	88.31	PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sat...	[more]
gi\|728849640\|gb\|KHG29083.1\|	1.5e-26	76.19	Succinate dehydrogenase assembly factor 1, mitochondrial [Gossypium arboreum]	[more]
gi\|703138968\|ref\|XP_010106864.1\|	7.4e-26	77.38	hypothetical protein L484_004472 [Morus notabilis]	[more]
gi\|697155883\|ref\|XP_009586684.1\|	7.4e-26	75.00	PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR026868	Lyrm2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012730.1	CmoCh09G012730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 14..74 score: 1.3
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	FAMILY NOT NAMED	coord: 1..77 score: 4.4
None	No IPR available	PANTHER	PTHR13675:SF1	EXPRESSED PROTEIN	coord: 1..77 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G012730	CmaCh09G013080	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012730	Cla012448	Watermelon (97103) v1	cmowmB011
CmoCh09G012730	MELO3C022175	Melon (DHL92) v3.5.1	cmomeB000
CmoCh09G012730	ClCG08G001090	Watermelon (Charleston Gray)	cmowcgB027
CmoCh09G012730	Lsi08G000850	Bottle gourd (USVL1VR-Ls)	cmolsiB025
CmoCh09G012730	Cp4.1LG06g09900	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012730	MELO3C022175.2	Melon (DHL92) v3.6.1	cmomedB000
CmoCh09G012730	Cla97C08G145450	Watermelon (97103) v2	cmowmbB028
CmoCh09G012730	Bhi06G000195	Wax gourd	cmowgoB0001
CmoCh09G012730	Carg26293	Silver-seed gourd	carcmoB0229
CmoCh09G012730	Carg24131	Silver-seed gourd	carcmoB0929

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012730	Cucurbita moschata (Rifu)	cmocmoB021
CmoCh09G012730	Cucumber (Gy14) v1	cgycmoB0658
CmoCh09G012730	Cucurbita maxima (Rimu)	cmacmoB029
CmoCh09G012730	Cucurbita maxima (Rimu)	cmacmoB438
CmoCh09G012730	Wild cucumber (PI 183967)	cmocpiB020
CmoCh09G012730	Cucumber (Chinese Long) v2	cmocuB020
CmoCh09G012730	Cucurbita pepo (Zucchini)	cmocpeB025
CmoCh09G012730	Cucumber (Gy14) v2	cgybcmoB551
CmoCh09G012730	Cucumber (Chinese Long) v3	cmocucB0024