Bhi06G000195 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000195
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	succinate dehydrogenase assembly factor 1, mitochondrial
Location	chr6 : 5024679 .. 5025189 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGGCACTGTTCGATTTTCGACTATCAATCCCCATTCTGAGCCTTGAAATTGTATGTACATTTCTTCGATTCTTCGCTATGGCTGTTCTCGGTTCTGATAGGATCGATTTTGAACCCTAGAAAATAAACTGCGATCGATTTGCTTTTTTACCTCCTGAATTTCAGATTCGCAATTTTGCTGGTGGATCCTCATCTGATAATGAAATTTTTTATTCATGATCTTGCTTTTCAGTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

mRNA sequence

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

Coding sequence (CDS)

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

Protein sequence

MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDLTINFAACFKCLKMETMGFS

Homology

[Close]

BLAST of Bhi06G000195 vs. TAIR10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 2  AKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++D
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVD 51

[Close]

BLAST of Bhi06G000195 vs. TrEMBL
Match: tr|A0A1S3CAJ2|A0A1S3CAJ2_CUCME (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. TrEMBL
Match: tr|A0A0A0KST3|A0A0A0KST3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. TrEMBL
Match: tr|A0A2H5QD45|A0A2H5QD45_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_218380 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          +LSGLQKQVLSLYR FLRAAR KSAEDRRQIESIV+AEFRRN+ Q+D
Sbjct: 39 RLSGLQKQVLSLYRGFLRAARCKSAEDRRQIESIVSAEFRRNSNQVD 85

[Close]

BLAST of Bhi06G000195 vs. TrEMBL
Match: tr|A0A1U8IIR1|A0A1U8IIR1_GOSHI (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107895066 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          KLSG+Q+QVLSLYR FLRAARSK  EDRRQIESIV+AEFRRN+KQ+D
Sbjct: 8  KLSGMQRQVLSLYRGFLRAARSKPTEDRRQIESIVSAEFRRNSKQVD 54

[Close]

BLAST of Bhi06G000195 vs. TrEMBL
Match: tr|W9RV94|W9RV94_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004472 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          +LSGLQKQVLSLYR FLRAAR KSAEDRR+IES V+AEFRRNAKQID
Sbjct: 8  RLSGLQKQVLSLYRGFLRAARLKSAEDRRRIESTVSAEFRRNAKQID 54

[Close]

BLAST of Bhi06G000195 vs. NCBI nr
Match: XP_022973474.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID------------- 62
          KLSGLQKQVLSLYRAFLRAARSKSAEDRRQ+ESIVAAEFRRNAKQID             
Sbjct: 8  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 63 LTINFAACF-------KCLKMETMGFS 70
           TINFA  F       KCLKM TM FS
Sbjct: 68 ATINFAEQFKSVVESLKCLKMRTMDFS 94

[Close]

BLAST of Bhi06G000195 vs. NCBI nr
Match: XP_022925400.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 8.2e-16
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID------------- 62
          KLSGLQKQVLSLYR+FLRAARSKSAEDRRQ+ES+VAAEFRRNAKQID             
Sbjct: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 63 LTINF-------AACFKCLKMETMGFS 70
          +TINF           KCLKM TM FS
Sbjct: 68 VTINFGKQSKSVVESLKCLKMWTMDFS 94

[Close]

BLAST of Bhi06G000195 vs. NCBI nr
Match: XP_008459591.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. NCBI nr
Match: XP_011656085.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus] >KGN52665.1 hypothetical protein Csa_5G649345 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. NCBI nr
Match: XP_022141880.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA QID
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQID 52

The following BLAST results are available for this feature:

BLAST of Bhi06G000195 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G000195 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39725.1	3.9e-12	68.75	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Bhi06G000195 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAJ2\|A0A1S3CAJ2_CUCME	1.1e-13	91.84	succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656...	[more]
tr\|A0A0A0KST3\|A0A0A0KST3_CUCSA	3.3e-13	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=3 SV=1	[more]
tr\|A0A2H5QD45\|A0A2H5QD45_CITUN	1.4e-11	85.11	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_218380 PE=3 SV=1	[more]
tr\|A0A1U8IIR1\|A0A1U8IIR1_GOSHI	1.8e-11	82.98	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Gossypium hirsu...	[more]
tr\|W9RV94\|W9RV94_9ROSA	1.8e-11	87.23	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004472 PE=3 SV=1	[more]

BLAST of Bhi06G000195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973474.1	2.6e-17	70.11	succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima]	[more]
XP_022925400.1	8.2e-16	65.52	succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschat...	[more]
XP_008459591.1	1.7e-13	91.84	PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis mel...	[more]
XP_011656085.1	5.0e-13	89.80	PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sat...	[more]
XP_022141880.1	1.9e-12	91.49	succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026868	Lyrm2
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0018315	molybdenum incorporation into molybdenum-molybdopterin complex
biological_process	GO:0006777	Mo-molybdopterin cofactor biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005829	cytosol
cellular_component	GO:0019008	molybdopterin synthase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0030366	molybdopterin synthase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000195	Bhi06M000195	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 9..49 e-value: 2.6E-11 score: 43.3
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 2..49
None	No IPR available	PANTHER	PTHR13675:SF1	EXPRESSED PROTEIN	coord: 2..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G000195	MELO3C022175	Melon (DHL92) v3.5.1	mewgoB029
Bhi06G000195	ClCG08G001090	Watermelon (Charleston Gray)	wcgwgoB608
Bhi06G000195	Cucsa.237210	Cucumber (Gy14) v1	cgywgoB474
Bhi06G000195	CmaCh09G013080	Cucurbita maxima (Rimu)	cmawgoB0009
Bhi06G000195	CmoCh09G012730	Cucurbita moschata (Rifu)	cmowgoB0001
Bhi06G000195	Lsi08G000850	Bottle gourd (USVL1VR-Ls)	lsiwgoB586
Bhi06G000195	Cp4.1LG06g09900	Cucurbita pepo (Zucchini)	cpewgoB0974
Bhi06G000195	MELO3C022175.2	Melon (DHL92) v3.6.1	medwgoB027
Bhi06G000195	Carg24131	Silver-seed gourd	carwgoB0793
Bhi06G000195	Cla012448	Watermelon (97103) v1	wgowmB124
Bhi06G000195	Cla97C08G145450	Watermelon (97103) v2	wgowmbB147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000195	Cucumber (Gy14) v1	cgywgoB471
Bhi06G000195	Cucumber (Gy14) v2	cgybwgoB439
Bhi06G000195	Cucurbita maxima (Rimu)	cmawgoB0556
Bhi06G000195	Cucurbita moschata (Rifu)	cmowgoB0553
Bhi06G000195	Cucurbita pepo (Zucchini)	cpewgoB0671
Bhi06G000195	Wild cucumber (PI 183967)	cpiwgoB465
Bhi06G000195	Cucumber (Chinese Long) v3	cucwgoB474
Bhi06G000195	Cucumber (Chinese Long) v2	cuwgoB461
Bhi06G000195	Watermelon (Charleston Gray)	wcgwgoB609
Bhi06G000195	Watermelon (97103) v2	wgowmbB148
Bhi06G000195	Watermelon (97103) v1	wgowmB125
Bhi06G000195	Silver-seed gourd	carwgoB0212