CmoCh09G012350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cmo_Chr09 : 10591757 .. 10592185 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTTTTGAATTCCTCTGTAAAAATAAATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAAGGCCAAGCACAGGTTCACTTTGCCTTGCACAGTTCATATTTGATCTCATACTCAAGTTGGTAACCTATTGATTTATATGAATATGTAGGAAAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACTAAAGATTCGATACAAGATGCAGGACAACAGATGATGGTCAAAGCCCAGGATGCAGTTGATTCTGTCAAGGATGCTACTGGCTTGAAGAAATGAAGCTTTTCCATTGCCCATTTCTCCTTGTGATCGTTGTCACTTATCGAATATTTTTAAATATTCATCCTATGTTTATCATTTTTCAGATAAAGATAAAGGCCCTATATATTGATGCAGTGC

mRNA sequence

GTGTTTTTTGAATTCCTCTGTAAAAATAAATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAAGGCCAAGCACAGGAAAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACTAAAGATTCGATACAAGATGCAGGACAACAGATGATGGTCAAAGCCCAGGATGCAGTTGATTCTGTCAAGGATGCTACTGGCTTGAAGAAATGAAGCTTTTCCATTGCCCATTTCTCCTTGTGATCGTTGTCACTTATCGAATATTTTTAAATATTCATCCTATGTTTATCATTTTTCAGATAAAGATAAAGGCCCTATATATTGATGCAGTGC

Coding sequence (CDS)

ATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAAGGCCAAGCACAGGAAAAGGCGAGTAATTTGATGGACAAGGCAAGTGATGCAGCCCAATCAACTAAAGATTCGATACAAGATGCAGGACAACAGATGATGGTCAAAGCCCAGGATGCAGTTGATTCTGTCAAGGATGCTACTGGCTTGAAGAAATGA

Homology

[Close]

BLAST of CmoCh09G012350 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-19
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNSQN+SYQIGEAKGQAQEKASN+M+KASDAAQS K+SIQ+ GQQM  KAQ A D+VK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNS+ +SY IGEAKGQAQEKASNLMDKA D AQS K+S+Q+AGQQM  KAQ A D+VK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. TrEMBL
Match: A0A061EH65_THECC (Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019635 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNSQ++SY+ GEAKGQAQEKASNLMDKA+DAAQS K+S+Q+ GQ+MM KA  A ++VK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. TrEMBL
Match: K4BCA9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-15
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 3  DNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVKDA 62
          DNSQNLSYQ G+AKGQAQEK + +MD+A++AAQS KDS+Q+AGQQM  KAQ A D+VK+A
Sbjct: 2  DNSQNLSYQAGQAKGQAQEKGNQMMDRAANAAQSAKDSLQEAGQQMQAKAQGAADAVKNA 61

Query: 63 TGLKK 68
          TGL K
Sbjct: 62 TGLNK 66

[Close]

BLAST of CmoCh09G012350 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-15
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MAD+SQ +SYQ GEAKGQ +EKASNLMD A++AAQS K++IQ+AGQQ+M KAQ A +++K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-16
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          M+ NSQN+S+Q G+AKGQ QEKAS +MDKAS+AAQS K+S+++ GQQ+  KAQ A +SVK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGLKK 68
          +ATG+ K
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-15
Identity = 40/67 (59.70%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          M++NSQ++S+  G+AKGQ QEKASNL+DKAS+AAQS K+SIQ+ GQQ+  KAQ A +++K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGLKK 68
          + TG+ K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmoCh09G012350 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-14
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 3  DNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVKDA 62
          DN QN SYQ G+A GQ +EKA  +MDKA DAA S +DS+Q  GQQM  KAQ A D VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGLKK 68
          TG+ K
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmoCh09G012350 vs. TAIR10
Match: AT5G15970.1 (AT5G15970.1 stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6))

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          M++ ++N ++Q G+A G+A+EK++ L+DKA DAA +   S Q AG+ +   A   V+ VK
Sbjct: 1  MSETNKN-AFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVK 60

Query: 61 DATGLKK 68
          D TGL K
Sbjct: 61 DKTGLNK 66

[Close]

BLAST of CmoCh09G012350 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNSQN+SYQIGEAKGQAQEKASN+M+KASDAAQS K+SIQ+ GQQM  KAQ A D+VK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. NCBI nr
Match: gi|659073371|ref|XP_008437024.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNSQ +S+QIGEAKGQAQEKASNLMDKA DA QS K+S+Q+AGQQM  KA+DA D+VK
Sbjct: 1  MADNSQKMSHQIGEAKGQAQEKASNLMDKAGDATQSAKESVQEAGQQMRAKAEDAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNSQ +SY +GEAKGQAQEKASN+MDKASD AQS K+S+Q+AGQQM  KAQ A D+VK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MAD+SQ +SYQ GEAKGQA+EKASNLMDKAS+AAQS K++IQ+AGQQMM KAQ A D++K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmoCh09G012350 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKDSIQDAGQQMMVKAQDAVDSVK 60
          MADNS+ +SY IGEAKGQAQEKASNLMDKA D AQS K+S+Q+AGQQM  KAQ A D+VK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmoCh09G012350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G012350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4_CUCSA	8.1e-19	79.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	4.4e-17	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A061EH65_THECC	6.4e-16	71.64	Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019...	[more]
K4BCA9_SOLLC	3.2e-15	70.77	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0A0KVV6_CUCSA	4.1e-15	67.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]

BLAST of CmoCh09G012350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38760.1	2.6e-16	62.69	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	2.2e-15	59.70	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	3.1e-14	61.54	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	9.1e-06	43.28	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / c...	[more]

BLAST of CmoCh09G012350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469355\|ref\|XP_004152386.1\|	1.2e-18	79.10	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|659073371\|ref\|XP_008437024.1\|	5.7e-18	76.12	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	2.2e-17	74.63	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	2.9e-17	74.63	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	6.4e-17	74.63	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012350.1	CmoCh09G012350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 5.7
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G012350	CmaCh09G012800	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012350	Cp4.1LG06g09560	Cucurbita pepo (Zucchini)	cmocpeB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012350	Cucumber (Gy14) v2	cgybcmoB683
CmoCh09G012350	Melon (DHL92) v3.6.1	cmomedB017
CmoCh09G012350	Silver-seed gourd	carcmoB0929
CmoCh09G012350	Cucumber (Chinese Long) v3	cmocucB0027
CmoCh09G012350	Watermelon (97103) v2	cmowmbB024
CmoCh09G012350	Watermelon (97103) v2	cmowmbB033
CmoCh09G012350	Wax gourd	cmowgoB0008
CmoCh09G012350	Cucumber (Gy14) v1	cgycmoB0991
CmoCh09G012350	Cucurbita maxima (Rimu)	cmacmoB444
CmoCh09G012350	Wild cucumber (PI 183967)	cmocpiB023
CmoCh09G012350	Cucumber (Chinese Long) v2	cmocuB022
CmoCh09G012350	Melon (DHL92) v3.5.1	cmomeB015
CmoCh09G012350	Watermelon (Charleston Gray)	cmowcgB024
CmoCh09G012350	Bottle gourd (USVL1VR-Ls)	cmolsiB022