CmaCh09G012800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Cma_Chr09 : 8797282 .. 8797783 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTAATCACCAAAATCCATTCAGATTTTCAACTCTGCAAAAATAAATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAGGGCCAAGCACAGGTTCACTTTCCCTTGAATAGTTCATATTTGATCTCATACTCAAATTGGTAACCTATTGATTTATGTGAATATGTAGGAGAAGGCGAGTAATTTGATGGATAAGGCAAGTGATGCAGCCCAATCAACTAAGGAGACAATACAAGAGACAGGGCAACAGATGATGGTCAAAGCCCAGGATGCGGTTGATTCTGTTAAGGATGCTACTGGCTTGAAGAAATGAAGCTTTTCCATTGCCCGTTTCTCCATGTAATCGTTGTCATTTATTGAATATTTTTAAATATTCATCCTGTGATCAGATAAAGATAAAGGCCCCACATACTGATGGGTGCCAGTTGAATTGACCATGAAATAAAGTCACGCTAGATAGTTTTTAACCTCGTTTGTTGTTCTCGAA

mRNA sequence

AAGATTAATCACCAAAATCCATTCAGATTTTCAACTCTGCAAAAATAAATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAGGGCCAAGCACAGGAGAAGGCGAGTAATTTGATGGATAAGGCAAGTGATGCAGCCCAATCAACTAAGGAGACAATACAAGAGACAGGGCAACAGATGATGGTCAAAGCCCAGGATGCGGTTGATTCTGTTAAGGATGCTACTGGCTTGAAGAAATGAAGCTTTTCCATTGCCCGTTTCTCCATGTAATCGTTGTCATTTATTGAATATTTTTAAATATTCATCCTGTGATCAGATAAAGATAAAGGCCCCACATACTGATGGGTGCCAGTTGAATTGACCATGAAATAAAGTCACGCTAGATAGTTTTTAACCTCGTTTGTTGTTCTCGAA

Coding sequence (CDS)

ATGGCAGACAACTCTCAGAACCTGAGCTATCAAATTGGAGAAGCCAAGGGCCAAGCACAGGAGAAGGCGAGTAATTTGATGGATAAGGCAAGTGATGCAGCCCAATCAACTAAGGAGACAATACAAGAGACAGGGCAACAGATGATGGTCAAAGCCCAGGATGCGGTTGATTCTGTTAAGGATGCTACTGGCTTGAAGAAATGA

Protein sequence

MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVKDATGLKK

Homology

[Close]

BLAST of CmaCh09G012800 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.7e-19
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQN+SYQIGEAKGQAQEKASN+M+KASDAAQS KE+IQE GQQM  KAQ A D+VK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. TrEMBL
Match: A0A0A0KRE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNS+ +SY IGEAKGQAQEKASNLMDKA D AQS KE++QE GQQM  KAQ A D+VK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. TrEMBL
Match: A0A061EH65_THECC (Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019635 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-17
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQ++SY+ GEAKGQAQEKASNLMDKA+DAAQS KE++QETGQ+MM KA  A ++VK
Sbjct: 1  MADNSQSMSYKAGEAKGQAQEKASNLMDKAADAAQSAKESMQETGQKMMEKAHGAKEAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQ +SY  GEAKGQ QEK SN+MDKASDAAQS KE++QETGQQMM KAQ A D+VK
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]

BLAST of CmaCh09G012800 vs. TrEMBL
Match: A0A0A0KVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-16
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MAD+SQ +SYQ GEAKGQ +EKASNLMD A++AAQS KETIQE GQQ+M KAQ A +++K
Sbjct: 1  MADSSQKMSYQAGEAKGQVEEKASNLMDNANNAAQSAKETIQEAGQQVMAKAQGAAEAIK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          M+ NSQN+S+Q G+AKGQ QEKAS +MDKAS+AAQS KE+++ETGQQ+  KAQ A +SVK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGLKK 68
          +ATG+ K
Sbjct: 61 NATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-15
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          M++NSQ++S+  G+AKGQ QEKASNL+DKAS+AAQS KE+IQE GQQ+  KAQ A +++K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGLKK 68
          + TG+ K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of CmaCh09G012800 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-14
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1


Query: 3  DNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVKDA 62
          DN QN SYQ G+A GQ +EKA  +MDKA DAA S ++++Q+TGQQM  KAQ A D VKD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGLKK 68
          TG+ K
Sbjct: 62 TGMNK 66

[Close]

BLAST of CmaCh09G012800 vs. NCBI nr
Match: gi|449469355|ref|XP_004152386.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-19
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQN+SYQIGEAKGQAQEKASN+M+KASDAAQS KE+IQE GQQM  KAQ A D+VK
Sbjct: 1  MADNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. NCBI nr
Match: gi|659119050|ref|XP_008459448.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-18
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MAD+SQ +SYQ GEAKGQA+EKASNLMDKAS+AAQS KETIQE GQQMM KAQ A D++K
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. NCBI nr
Match: gi|659073371|ref|XP_008437024.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQ +S+QIGEAKGQAQEKASNLMDKA DA QS KE++QE GQQM  KA+DA D+VK
Sbjct: 1  MADNSQKMSHQIGEAKGQAQEKASNLMDKAGDATQSAKESVQEAGQQMRAKAEDAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. NCBI nr
Match: gi|659073373|ref|XP_008437025.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNSQ +SY +GEAKGQAQEKASN+MDKASD AQS KE++QE GQQM  KAQ A D+VK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

[Close]

BLAST of CmaCh09G012800 vs. NCBI nr
Match: gi|449469357|ref|XP_004152387.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MADNSQNLSYQIGEAKGQAQEKASNLMDKASDAAQSTKETIQETGQQMMVKAQDAVDSVK 60
          MADNS+ +SY IGEAKGQAQEKASNLMDKA D AQS KE++QE GQQM  KAQ A D+VK
Sbjct: 1  MADNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 DATGLKK 68
          DATG+ K
Sbjct: 61 DATGMNK 67

The following BLAST results are available for this feature:

BLAST of CmaCh09G012800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD4_CUCSA	4.7e-19	80.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]
A0A0A0KRE1_CUCSA	4.4e-17	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165860 PE=4 SV=1	[more]
A0A061EH65_THECC	5.8e-17	74.63	Late embryogenesis abundant protein family protein OS=Theobroma cacao GN=TCM_019...	[more]
A0A0A0KXN2_CUCSA	4.9e-16	77.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A0A0KVV6_CUCSA	6.4e-16	70.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643260 PE=4 SV=1	[more]

BLAST of CmaCh09G012800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38760.1	2.3e-17	65.67	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.3e-15	61.19	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	2.4e-14	60.00	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmaCh09G012800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469355\|ref\|XP_004152386.1\|	6.8e-19	80.60	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|659119050\|ref\|XP_008459448.1\|	4.4e-18	77.61	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659073371\|ref\|XP_008437024.1\|	5.7e-18	76.12	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659073373\|ref\|XP_008437025.1\|	2.2e-17	74.63	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449469357\|ref\|XP_004152387.1\|	6.4e-17	74.63	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012800.1	CmaCh09G012800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 2..67 score: 7.4
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 2..67 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G012800	CmoCh09G012350	Cucurbita moschata (Rifu)	cmacmoB028
CmaCh09G012800	Cp4.1LG06g09560	Cucurbita pepo (Zucchini)	cmacpeB061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012800	Wild cucumber (PI 183967)	cmacpiB033
CmaCh09G012800	Cucumber (Chinese Long) v2	cmacuB032
CmaCh09G012800	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012800	Melon (DHL92) v3.5.1	cmameB026
CmaCh09G012800	Watermelon (Charleston Gray)	cmawcgB031
CmaCh09G012800	Cucurbita pepo (Zucchini)	cmacpeB062
CmaCh09G012800	Bottle gourd (USVL1VR-Ls)	cmalsiB034
CmaCh09G012800	Cucumber (Gy14) v2	cgybcmaB700
CmaCh09G012800	Melon (DHL92) v3.6.1	cmamedB029
CmaCh09G012800	Silver-seed gourd	carcmaB0953
CmaCh09G012800	Cucumber (Chinese Long) v3	cmacucB0040
CmaCh09G012800	Watermelon (97103) v2	cmawmbB037
CmaCh09G012800	Wax gourd	cmawgoB0016
CmaCh09G012800	Cucumber (Gy14) v1	cgycmaB0989