CmoCh08G012450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G012450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-binding enhancer family protein
Location	Cmo_Chr08 : 7879377 .. 7880273 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGACGAGAAGGAACTGAGGGGTTTGCTGGTGTTTGCGGGTGTTTGCTCCTTGCCGTCGCTGATTTGTTTCGATTCTCAGAAGAGACGTGACAAGTTCTATCGTCTTTACAAATCACCACAATTACTGTTACGCCGTTCGTTCCAGAGCACAGCGCTGAACAATCAGTGACTGACTTTTACAGAAATGGAAGGTGGAGACGACGGAGTCGAGATGCTGGTGGATTCTAAGGACATGCAGCAACAGAGCAAGGCTCTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAAGAGGTATTTGCTTCTACCTTTTTGCTTAGAATAGGAAGGAATTGAATTGACTAGCAATTTAGCTAACCTAATGATTGAATTTGGGAGACTTTGTTTAGAGAGACTTTGTTTTTCTTCCTACATTTTAATTTTTGCATATATATTGACATTTTGTTCTATCAGTTCCTTTTAATTTACGTTGTTTCGATGCTCATGAAAAATTAATTGCGTGTGTTCTTGTTTTGCGATTGGTGGCAGGCAATGGCATCTATCGCTGCATCGGCTGAAGCCGATCGGAAGGCTATGATATTGAGGTAAATGGTGAAGGCCATGTTATGATATACTTTTTTTTGGTTACTAAGCGACTTGGAATTGTTGGCAAATAATGAGTTCCTTCACATCATTGGGAAATATATATGTATCTATATCTTATACACATAGTAGTCGCCCATTCGGAAAGGAAAAATCGGATGTTGATATTGGATTTGATTTGTAAGTATTTAGCATGGAGTGTTTACTCACTCAGAAGTAGTAGTTGTTGTCTTTGCTTCTTTCAGAGAGAAAGAGCTAGCAGCTGTCAAGATACATAATCGCAAGCGAAGTTGA

mRNA sequence

GTCGACGAGAAGGAACTGAGGGGTTTGCTGGTGTTTGCGGGTGTTTGCTCCTTGCCGTCGCTGATTTGTTTCGATTCTCAGAAGAGACGTGACAAGTTCTATCGTCTTTACAAATCACCACAATTACTGTTACGCCGTTCGTTCCAGAGCACAGCGCTGAACAATCAGTGACTGACTTTTACAGAAATGGAAGGTGGAGACGACGGAGTCGAGATGCTGGTGGATTCTAAGGACATGCAGCAACAGAGCAAGGCTCTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAAGAGGCAATGGCATCTATCGCTGCATCGGCTGAAGCCGATCGGAAGGCTATGATATTGAGAGAGAAAGAGCTAGCAGCTGTCAAGATACATAATCGCAAGCGAAGTTGA

Coding sequence (CDS)

ATGGAAGGTGGAGACGACGGAGTCGAGATGCTGGTGGATTCTAAGGACATGCAGCAACAGAGCAAGGCTCTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAAGAGGCAATGGCATCTATCGCTGCATCGGCTGAAGCCGATCGGAAGGCTATGATATTGAGAGAGAAAGAGCTAGCAGCTGTCAAGATACATAATCGCAAGCGAAGTTGA

Homology

[Close]

BLAST of CmoCh08G012450 vs. TrEMBL
Match: A0A0L9VDA7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g170000 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++GVEM+VDSKD+QQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. TrEMBL
Match: A0A0S3S4M0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G118000 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++GVEM+VDSKD+QQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. TrEMBL
Match: V7BN36_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G118400g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++GVEM+VDSKD+QQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. TrEMBL
Match: A0A151RDD1_CAJCA (Huntingtin-interacting protein K OS=Cajanus cajan GN=KK1_038194 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++GVEM+VDSKD+QQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. TrEMBL
Match: A2Q2W3_MEDTR (Huntingtin-interacting K-like protein OS=Medicago truncatula GN=MTR_2g034010 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.8e-23
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGGD+GVEM+VDSKDMQQQSKA DKLTDRVEDRQLDSTRVQEAMASIAASAEAD  AM 
Sbjct: 1  MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMR 60

Query: 61 LREKELAAVKIH 73
          LREKELAAVKI+
Sbjct: 61 LREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. TAIR10
Match: AT3G06610.1 (AT3G06610.1 DNA-binding enhancer protein-related)

HSP 1 Score: 92.8 bits (229), Expect = 9.8e-20
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MEGGDD-GVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAM 60
          MEG ++ G E+ VDSKD+QQQSKA DKLTDRVEDRQLDS+RVQ AMASIAAS EAD  A 
Sbjct: 1  MEGAEEAGAEIAVDSKDLQQQSKAFDKLTDRVEDRQLDSSRVQSAMASIAASREADLNAK 60

Query: 61 ILREKELAAVKIH 73
           LREKELA+VKI+
Sbjct: 61 RLREKELASVKIN 73

[Close]

BLAST of CmoCh08G012450 vs. NCBI nr
Match: gi|593693694|ref|XP_007147368.1| (hypothetical protein PHAVU_006G118400g [Phaseolus vulgaris])

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-23
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++GVEM+VDSKD+QQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. NCBI nr
Match: gi|357448911|ref|XP_003594731.1| (huntingtin-interacting K-like protein [Medicago truncatula])

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGGD+GVEM+VDSKDMQQQSKA DKLTDRVEDRQLDSTRVQEAMASIAASAEAD  AM 
Sbjct: 1  MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMR 60

Query: 61 LREKELAAVKIH 73
          LREKELAAVKI+
Sbjct: 61 LREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. NCBI nr
Match: gi|449462146|ref|XP_004148802.1| (PREDICTED: huntingtin-interacting protein K [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          ME GDDG+E LVDSKDMQQQSKA DKLTDRVEDRQLDSTRVQEAMASIAASAEAD  AM+
Sbjct: 1  MEAGDDGIERLVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMM 60

Query: 61 LREKELAAVKIH 73
          LREKELAAVKI+
Sbjct: 61 LREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. NCBI nr
Match: gi|659116962|ref|XP_008458350.1| (PREDICTED: huntingtin-interacting protein K [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          ME GDDG+E LVDSKDMQQQSKA DKLTDRVEDRQLDSTRVQEAMASIAASAEAD  AM+
Sbjct: 1  MEAGDDGIERLVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMM 60

Query: 61 LREKELAAVKIH 73
          LREKELAAVKI+
Sbjct: 61 LREKELAAVKIN 72

[Close]

BLAST of CmoCh08G012450 vs. NCBI nr
Match: gi|734357914|gb|KHN14692.1| (Huntingtin-interacting protein K [Glycine soja])

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 62/72 (86.11%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MEGGDDGVEMLVDSKDMQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRKAMI 60
          MEGG++G+EM+VDSKD+QQQSKALDKLTD VEDRQLDSTRVQEAMASIAASAEADR AM 
Sbjct: 1  MEGGEEGLEMMVDSKDLQQQSKALDKLTDHVEDRQLDSTRVQEAMASIAASAEADRNAMR 60

Query: 61 LREKELAAVKIH 73
          +REKELAAVKI+
Sbjct: 61 IREKELAAVKIN 72

The following BLAST results are available for this feature:

BLAST of CmoCh08G012450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G012450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9VDA7_PHAAN	2.1e-23	88.89	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g170000 PE=4 SV=1	[more]
A0A0S3S4M0_PHAAN	2.1e-23	88.89	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G118000 PE=...	[more]
V7BN36_PHAVU	2.1e-23	88.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G118400g PE=4 SV=1	[more]
A0A151RDD1_CAJCA	2.1e-23	88.89	Huntingtin-interacting protein K OS=Cajanus cajan GN=KK1_038194 PE=4 SV=1	[more]
A2Q2W3_MEDTR	4.8e-23	90.28	Huntingtin-interacting K-like protein OS=Medicago truncatula GN=MTR_2g034010 PE=...	[more]

BLAST of CmoCh08G012450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06610.1	9.8e-20	75.34	DNA-binding enhancer protein-related	[more]

BLAST of CmoCh08G012450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593693694\|ref\|XP_007147368.1\|	3.1e-23	88.89	hypothetical protein PHAVU_006G118400g [Phaseolus vulgaris]	[more]
gi\|357448911\|ref\|XP_003594731.1\|	6.8e-23	90.28	huntingtin-interacting K-like protein [Medicago truncatula]	[more]
gi\|449462146\|ref\|XP_004148802.1\|	1.2e-22	88.89	PREDICTED: huntingtin-interacting protein K [Cucumis sativus]	[more]
gi\|659116962\|ref\|XP_008458350.1\|	1.2e-22	88.89	PREDICTED: huntingtin-interacting protein K [Cucumis melo]	[more]
gi\|734357914\|gb\|KHN14692.1\|	2.0e-22	86.11	Huntingtin-interacting protein K [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G012450.1	CmoCh08G012450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31184	FAMILY NOT NAMED	coord: 1..71 score: 5.3
None	No IPR available	PANTHER	PTHR31184:SF3	SUBFAMILY NOT NAMED	coord: 1..71 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G012450	Cucsa.020770	Cucumber (Gy14) v1	cgycmoB0817
CmoCh08G012450	CmaCh17G003700	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G012450	Cla009242	Watermelon (97103) v1	cmowmB867
CmoCh08G012450	Csa6G330980	Cucumber (Chinese Long) v2	cmocuB895
CmoCh08G012450	MELO3C021266	Melon (DHL92) v3.5.1	cmomeB800
CmoCh08G012450	ClCG06G004560	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G012450	CSPI06G17800	Wild cucumber (PI 183967)	cmocpiB908
CmoCh08G012450	Lsi09G014940	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G012450	Cp4.1LG12g03280	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G012450	MELO3C021266.2	Melon (DHL92) v3.6.1	cmomedB903
CmoCh08G012450	CsaV3_6G028590	Cucumber (Chinese Long) v3	cmocucB1059
CmoCh08G012450	Cla97C06G113980	Watermelon (97103) v2	cmowmbB896
CmoCh08G012450	Bhi12G001731	Wax gourd	cmowgoB1085
CmoCh08G012450	CsGy6G017400	Cucumber (Gy14) v2	cgybcmoB859
CmoCh08G012450	Carg05551	Silver-seed gourd	carcmoB0104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G012450	CmoCh17G003600	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G012450	Silver-seed gourd	carcmoB0391
CmoCh08G012450	Silver-seed gourd	carcmoB0960
CmoCh08G012450	Cucumber (Chinese Long) v3	cmocucB1029
CmoCh08G012450	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G012450	Watermelon (97103) v2	cmowmbB882
CmoCh08G012450	Watermelon (97103) v2	cmowmbB887
CmoCh08G012450	Wax gourd	cmowgoB1083
CmoCh08G012450	Wax gourd	cmowgoB1104
CmoCh08G012450	Cucurbita moschata (Rifu)	cmocmoB232
CmoCh08G012450	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G012450	Cucumber (Gy14) v1	cgycmoB0720
CmoCh08G012450	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G012450	Cucurbita maxima (Rimu)	cmacmoB840
CmoCh08G012450	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G012450	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G012450	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G012450	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G012450	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G012450	Watermelon (97103) v1	cmowmB856
CmoCh08G012450	Cucurbita pepo (Zucchini)	cmocpeB852
CmoCh08G012450	Cucurbita pepo (Zucchini)	cmocpeB862
CmoCh08G012450	Cucurbita pepo (Zucchini)	cmocpeB866
CmoCh08G012450	Bottle gourd (USVL1VR-Ls)	cmolsiB808
CmoCh08G012450	Bottle gourd (USVL1VR-Ls)	cmolsiB818
CmoCh08G012450	Cucumber (Gy14) v2	cgybcmoB255
CmoCh08G012450	Cucumber (Gy14) v2	cgybcmoB421
CmoCh08G012450	Melon (DHL92) v3.6.1	cmomedB940