CmoCh08G010970 (gene) Cucurbita moschata (Rifu)

NameCmoCh08G010970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
LocationCmo_Chr08 : 7041336 .. 7044132 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAGTTCGACCGGGAGTTTCTGCTCCTTCCGCCGGCCATTGCCTTCAAATTAGGAGTCCGGTGGTTCATCGGAGCACGTTCTTGACGATTCAACTCTGTGAACAAGTTCAGAGAGCTCGTTCAAGAATGGCCGTTGAGGTGAGTCCACGAACGGAACTTCTCTTTATTGGACATCGACATAAACTCGGAAGATTGTTGGAGGAAACTAGTCTTTGCGCAGGCTTAGTACATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGTGCTCTTCCGTCCTCTTTACCAAACCTGCTCTAGAGATTTTTGGCTCTTTGATTGAATTGAATGATTTATCTTCAAATTTGGAGTGCTGTACAGGAAATTAAACCCTAAATAATATGAGAACGATGAAGAGTTGAAGAAAATCCGAGAGGACGGGATGCTTCACTAATCCATCGATGTTTTCCATTTCTATTTTGTTGTCGAACTTTTTTGGATACGTTTTGTTCTTCTTGAGATGTGTAGGATTTACTTGATATATGCACACAGAAACTTGGTGATTGTGAAGAAATTCGTTACACTTGGATCGAACTGACCATCTATTCGAAGATTGTTATTTATGTAAATCTTAGTCAAAACAAAAATAAAACTATTTCATAGGTTACAATCTTCATAGTTGGATTATCCACAGTTAATGAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTGTGTGTATTCTTCTGTACTATACTATGACAATCAATACAAATCTGTGAGGTTTAGCTCAGGCTGTGCATTGTTGAGTATGGCTTAGATTAAATACTATATAAATTTGCCAACTGCTGTTGAAACATGGCTTAATAAATGTCTGAGCCTCATATTATTTATGAATTGAGCTTCTCAAAAGAATTGTAATTTGAACCACTTTGGAAAATTATTGGCCCCATTTGATTTTATGATTAAACGATAGAGATTTCTCTCTTGCAGGAAAGATATGGAATCTCGAATATAAAATTCTTATAAACTACATTTATTTTTATTGTTCTACAGGACCCTGTATTTGTGTCGATTAATACTGAAGCGCGTAGTACCTTATCACGAAAGCCTGTTTGATAATGTTTTACAGACTATTGAGTTTGTGTGTCAGATAAATAGTTCAATCATTTCCTTCAGAATACTGTTCTTGTTATACATGTCAATTATATTCTTCCCTACAGTATTGAGGGGTAGCTATGGTGTTTTTGCTTTAGAGATGTTAAAGATCATGTGTTTGTTTAGATTGCTGTCAGTTAGTATCTAATTAAATCTGCGTTAGGAGTTAGATCTAGTTTTTTATTTGATTTAGTTTTGATTTGATTAGATTTTATTTTGATTTGTTTACTGGTTTGTTACCAGATTTTCCGTAGATTTTTAGGTAGATTGTCTGAATATCTTTTGTATTCTCTGTATAAATATGGAGCATTCTTACTCTTCATAATTTAATCTTCTCATTAATCATTCAATCAATCCCTCCTTCACTAACAAGAGATTATTAACTTTTTTAGTTCTCTTGTTGACCAGAAAGTTGCAGGGCTCTTGGAGATCAGTGACTCGTTTAACACTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGGTAAGCATCTTCTGAATTTGCAACATTGATGTTAATTACATGCTCTTTCTATCCATTCTCGCCAGGCTTTTGATGAATGATCTACATTTTCGACGTCTTGTGCACTTGTATTGCCAAATATTGCAGCTGTTATGATATTAAAATCCCATATGCCTGCTTTACAAACTTCATTTATACCGTCTAGTTAACACAAAGAGTGCTTCTTCTTAAGTGTTATGAATTTTCTTAAAACTGAGTTTGATTCTGTTTGCAGAATTTTTTCAGTCAGCAACTGCTGGAGTTGGATTTTATGACAGCGAGGACCTATTTGCTTGGTTTGGTCTAAAAGACTATGCTTGCCAGTTGCTCTTTTCTGCTGCTCAGCTGCTCCTAAAAAGTTCAATTATTTCATATTCAGCAGAAGGTGAGTTAAAATGAACAGCAGTTCAAAAAAAAAAAAAAACAAAACAAAAAAGAAATTGAATATATTGTTGAGCGCTAATATATATGTGTAATAGCTCAAGCCCACTGCTAACAGATGTCCTCTTTGGGCTTTCCCTTTCGAGTTTCTCCTCAAGGTTTTTAAAACACGTCTGCTAGGGTAAGGTTTACTTCTCCAACCAACGTGGAATCTCAAGTGGACATAGTAGCTTTAATGCTGAAGACTTGAGTTCCACAAAATTGTTTGTGATAGTTTAGGATCAGATAACCGAGTCGGCACTAGTTTTTCATTGTTCATTTTCATGACTTATTTGGTTGAGGAAGAGTGAATTACAGAGGTTTTTGAAAATATAACTATTGCAGTTTTGAAGGAGATTTAGAAAGGTCATTTATATGATTTTATGTTTATTTTGAATGAAGTCATCTTTGTAGAAGGCAGTTTGAAGAGAGACTTCCATTAAATGTAGTGTTGTGTTCATGACAGAGCTGGGAACTGAACTGTTTTACTCTTGTCTGCAGTAGTAATACTAATAAGTAGCAAGTATCAAATGACGATAACTCTAACGTAAAGATAACTTCACATTGGACAGGATCAAGCAGAAGATCATGA

mRNA sequence

TCAAGTTCGACCGGGAGTTTCTGCTCCTTCCGCCGGCCATTGCCTTCAAATTAGGAGTCCGGTGGTTCATCGGAGCACGTTCTTGACGATTCAACTCTGTGAACAAGTTCAGAGAGCTCGTTCAAGAATGGCCGTTGAGGCTTAGTACATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGTGACTCGTTTAACACTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGAATTTTTTCAGTCAGCAACTGCTGGAGTTGGATTTTATGACAGCGAGGACCTATTTGCTTGGTTTGGTCTAAAAGACTATGCTTGCCAGTTGCTCTTTTCTGCTGCTCAGCTGCTCCTAAAAAGTTCAATTATTTCATATTCAGCAGAAGGATCAAGCAGAAGATCATGA

Coding sequence (CDS)

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATCGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGTGACTCGTTTAACACTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGAATTTTTTCAGTCAGCAACTGCTGGAGTTGGATTTTATGACAGCGAGGACCTATTTGCTTGGTTTGGTCTAAAAGACTATGCTTGCCAGTTGCTCTTTTCTGCTGCTCAGCTGCTCCTAAAAAGTTCAATTATTTCATATTCAGCAGAAGGATCAAGCAGAAGATCATGA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010970.1CmoCh08G010970.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 1..26
score: 8.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G010970Cp4.1LG17g01670Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G010970Carg15883Silver-seed gourdcarcmoB0449
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G010970Watermelon (97103) v2cmowmbB896
CmoCh08G010970Watermelon (97103) v2cmowmbB886
CmoCh08G010970Watermelon (97103) v2cmowmbB906
CmoCh08G010970Watermelon (97103) v2cmowmbB920
CmoCh08G010970Wax gourdcmowgoB1084
CmoCh08G010970Wax gourdcmowgoB1097
CmoCh08G010970Wax gourdcmowgoB1101
CmoCh08G010970Wax gourdcmowgoB1105
CmoCh08G010970Wax gourdcmowgoB1112
CmoCh08G010970Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G010970Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G010970Cucurbita moschata (Rifu)cmocmoB328
CmoCh08G010970Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G010970Cucumber (Gy14) v1cgycmoB0720
CmoCh08G010970Cucumber (Gy14) v1cgycmoB1075
CmoCh08G010970Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G010970Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G010970Cucurbita maxima (Rimu)cmacmoB384
CmoCh08G010970Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G010970Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G010970Wild cucumber (PI 183967)cmocpiB879
CmoCh08G010970Wild cucumber (PI 183967)cmocpiB883
CmoCh08G010970Cucumber (Chinese Long) v2cmocuB868
CmoCh08G010970Cucumber (Chinese Long) v2cmocuB872
CmoCh08G010970Melon (DHL92) v3.5.1cmomeB832
CmoCh08G010970Melon (DHL92) v3.5.1cmomeB829
CmoCh08G010970Watermelon (Charleston Gray)cmowcgB792
CmoCh08G010970Watermelon (Charleston Gray)cmowcgB799
CmoCh08G010970Watermelon (Charleston Gray)cmowcgB808
CmoCh08G010970Watermelon (97103) v1cmowmB853
CmoCh08G010970Watermelon (97103) v1cmowmB856
CmoCh08G010970Watermelon (97103) v1cmowmB867
CmoCh08G010970Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G010970Cucurbita pepo (Zucchini)cmocpeB862
CmoCh08G010970Cucurbita pepo (Zucchini)cmocpeB866
CmoCh08G010970Bottle gourd (USVL1VR-Ls)cmolsiB797
CmoCh08G010970Bottle gourd (USVL1VR-Ls)cmolsiB823
CmoCh08G010970Bottle gourd (USVL1VR-Ls)cmolsiB826
CmoCh08G010970Cucumber (Gy14) v2cgybcmoB254
CmoCh08G010970Cucumber (Gy14) v2cgybcmoB421
CmoCh08G010970Cucumber (Gy14) v2cgybcmoB959
CmoCh08G010970Melon (DHL92) v3.6.1cmomedB937
CmoCh08G010970Melon (DHL92) v3.6.1cmomedB940
CmoCh08G010970Silver-seed gourdcarcmoB0326
CmoCh08G010970Silver-seed gourdcarcmoB1025
CmoCh08G010970Silver-seed gourdcarcmoB1289
CmoCh08G010970Cucumber (Chinese Long) v3cmocucB1026
CmoCh08G010970Cucumber (Chinese Long) v3cmocucB1027
CmoCh08G010970Cucumber (Chinese Long) v3cmocucB1032
CmoCh08G010970Cucumber (Chinese Long) v3cmocucB1070