Carg15883 (gene) Silver-seed gourd

Overview
NameCarg15883
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
LocationCucurbita_argyrosperma_scaffold_080 : 362995 .. 365431 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGGTGCTCTTCCGTCCTCTTTACCAAACCTGCTCTAGAGACTTTTGGCTCTTTGATTGAATTGAATGATTTATCTGCAAATTTGGAGTGCTGTACAGGAAATTAAACCCTAAATAATATGAAAACGATGAAGAGTTGAAGAAAATCCGAGAGGACGGGATGCTTCACTAATCCATCGATGTTTTCCATTTCTATTTTTTAGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGTAGGATTTACTTGATATATGCACACAGAAACTTGGTGATTATGAAGAAATTCGTTACACTTTGATCGAACTGACCATCTATTCGAAGATTGTTATTCATGTAAATCTTAGTCAAAACAAAAATAAAATTATTTCATAGGTTACAATCTTCATAGTTGGATTATCCAGAGTTAATGAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTGTGTGTATTCTTCTGTACTATACTATGGCAATCAATACAAATCTGTGAGGTTTAGCTCAGGCTGTGCATTGTTGAGTATGGCTTAGATTAAATACTATATAAATTTGCCAACTGCTGTTGAAACATGGCTTAATAAATGTCTGAGCCTCATATTATTTATGAATTGAGCTTCTCAAAAGAATTGTAATCTGAACCACTTTGGAAAATTATTGGCCCCATTTGATTTTATGATTAAACGATAGAGATTTCTCTCTTGCAGGAAAGATATGGAATCTCGAATATAAAATTCTTATAAACTACATTTATTTTTATTGTTCTACAGGACCCTGTATTTGTGTCGATTAATACTGAAGCGCGTAGTACCTTATCACGAAAGCCTGTTTGATAATGTTTTACAGACTATTTGAGTTTGTGTGTCAGATAAATAGTTCAATCATTTCCTTCAGAATACTGTTCTTGTTATACATGTCAATTATATTCTTCCCTACAGTATTGAGGGGTAGCTATGGTGTTTTTGCTTTAGAGATTATTAACTTTTTTAGTTCTCTTGTTGACCAGAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGGTAAGCATCTTCTGAATTTGCAACATTGATGTTAATTACATGCTCTTTCTATCCATTCTCGCCAGGCTTTTGATGAATGATCTACATTTTCGACGTCTTGTGCACTTGTATTGCCAAATATTGCAGCTGTTATGATATTAAAATCCCATATGCCTGCTTTACAAACTTCATTTATACCGTCTAGTTAACACAAAGAGTGCTTCTTCTTAAGTGAGTGCTTCTTCTTAAGTGTTATGAATTTTCTTAAAACTGAGTTTGATTCTGTTTGCAGAATTTTGTTAGTCAAGAACTGCTGGAGTTGGATTCTATGACAGCGAGGACCTATTTGCTTGGTTTGGTCTAAAAGACTATGCTTGCCAGTTGCTCTTTTCTGCTGCTCAACTGCTCCTAAAAAGTTCAATTATTTCATATTCATCAGAAGGTGAGCTAAAATTGAACAGTAGTTCAAAAAAATAAATAAAATAATAAATAAATAAATTGAAAATATTGTCGAGCGCTAATATATATGTGTAATAGCTCAAGCCCACTGCTAACATATGTCCTCTTTGGGCTTTCCCTTTCAGGTTTCTCTTCAAGATTTTTAAAACACGTCTGCTAGGGAGAGGTTTCACCCCTTATAAAGAATACTTCGTTCTGTTGTGGAATCTCAAAATATGTCTATTTTGTTTCGATTTGGGAGTTATAAGACTTGAGTTCCACATAATTATTTGTGATAGTTTAGGATCAGATAACCGAGTCAGCACTAGTTTTTCATTGTTCATTTTTATGACTTATTTGGTTGAGGAAGAAAGAATTATGGAGGTTTTTGAAAATATAACTACTGCAGTTTTGAAGGAGATTTAGAAAGGTCATTTATATGATTTTATGTTTATTTTGCATGAAGTCATCTTTGTAGAAGGCAGTTTGAAGAGAGAATTTCATTAAATGTAGTGTTGTGTCCATGACAGAGCTGGGAACTGAACTGTTTTACTCATGTCTGCAGTAGTAATACTAATAAGTACCAAGTATCAAATGACGAAAGCTCTAACGTAAAGATAACTTCATATTGGACAGGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

mRNA sequence

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

Coding sequence (CDS)

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

Protein sequence

MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKSTSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENDQAAKIMKTHLGWEQYHYPIGAAKLKPAELGYNHASQLH
Homology
[Close]
BLAST of Carg15883 vs. TAIR10
Match: AT5G43850.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 5.3e-05
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAV--ELFW 32
          M+DSNEDQRLP H NPKE VS+D LA    L+W
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLAELGVLYW 40

[Close]
BLAST of Carg15883 vs. TAIR10
Match: AT4G14716.1 (acireductone dioxygenase 1)

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEFVS+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFVSLDKLA 43

[Close]
BLAST of Carg15883 vs. TAIR10
Match: AT4G14710.5 (RmlC-like cupins superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.4e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 20 MDDSEEDQRLPHHKDPKEFLSLDKLA 45

[Close]
BLAST of Carg15883 vs. Swiss-Prot
Match: sp|F6HDT7|MTND2_VITVI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04080 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS+EDQRLP H +PKEFVS+DQLA
Sbjct: 17 MDDSDEDQRLPHHRDPKEFVSLDQLA 42

[Close]
BLAST of Carg15883 vs. Swiss-Prot
Match: sp|Q8H185|MTND4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=ARD4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-04
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAV--ELFW 32
          M+DSNEDQRLP H NPKE VS+D LA    L+W
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLAELGVLYW 40

The following BLAST results are available for this feature:
BLAST of Carg15883 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15883 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43850.15.3e-0566.67RmlC-like cupins superfamily protein[more]
AT4G14716.11.5e-0473.08acireductone dioxygenase 1[more]
AT4G14710.53.4e-0469.23RmlC-like cupins superfamily protein[more]
BLAST of Carg15883 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F6HDT7|MTND2_VITVI7.3e-0476.921,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=2976... [more]
sp|Q8H185|MTND4_ARATH9.6e-0466.671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana O... [more]
BLAST of Carg15883 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15883-RACarg15883-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15883CmaCh08G011240Cucurbita maxima (Rimu)carcmaB0458
Carg15883CmoCh08G010970Cucurbita moschata (Rifu)carcmoB0449
Carg15883Cp4.1LG17g01670Cucurbita pepo (Zucchini)carcpeB0453
Carg15883MELO3C031184.2Melon (DHL92) v3.6.1carmedB0338
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15883Silver-seed gourdcarcarB260
Carg15883Silver-seed gourdcarcarB349
Carg15883Cucumber (Gy14) v2carcgybB0332
Carg15883Cucumber (Gy14) v2carcgybB0333
Carg15883Cucumber (Gy14) v1carcgyB0383
Carg15883Cucumber (Gy14) v1carcgyB0385
Carg15883Cucurbita maxima (Rimu)carcmaB0453
Carg15883Cucurbita maxima (Rimu)carcmaB0455
Carg15883Cucurbita maxima (Rimu)carcmaB0456
Carg15883Cucurbita maxima (Rimu)carcmaB0457
Carg15883Cucurbita moschata (Rifu)carcmoB0444
Carg15883Cucurbita moschata (Rifu)carcmoB0446
Carg15883Cucurbita moschata (Rifu)carcmoB0447
Carg15883Cucurbita moschata (Rifu)carcmoB0448
Carg15883Cucurbita pepo (Zucchini)carcpeB0450
Carg15883Cucurbita pepo (Zucchini)carcpeB0454
Carg15883Cucurbita pepo (Zucchini)carcpeB0456
Carg15883Wild cucumber (PI 183967)carcpiB0354
Carg15883Wild cucumber (PI 183967)carcpiB0355
Carg15883Cucumber (Chinese Long) v2carcuB0349
Carg15883Cucumber (Chinese Long) v2carcuB0350
Carg15883Cucumber (Chinese Long) v3carcucB0354
Carg15883Cucumber (Chinese Long) v3carcucB0355
Carg15883Bottle gourd (USVL1VR-Ls)carlsiB296
Carg15883Bottle gourd (USVL1VR-Ls)carlsiB297
Carg15883Bottle gourd (USVL1VR-Ls)carlsiB299
Carg15883Melon (DHL92) v3.5.1carmeB0330
Carg15883Melon (DHL92) v3.5.1carmeB0332
Carg15883Melon (DHL92) v3.6.1carmedB0340
Carg15883Watermelon (Charleston Gray)carwcgB0317
Carg15883Watermelon (Charleston Gray)carwcgB0318
Carg15883Watermelon (97103) v1carwmB0316
Carg15883Watermelon (97103) v1carwmB0317
Carg15883Watermelon (97103) v2carwmbB0333
Carg15883Watermelon (97103) v2carwmbB0334
Carg15883Watermelon (97103) v2carwmbB0336
Carg15883Wax gourdcarwgoB0407
Carg15883Wax gourdcarwgoB0409
Carg15883Wax gourdcarwgoB0411